In order to explore the effect of fishponds on soil water, salt transport and salinization in cropland wasteland, a study on soil water balance and salt distribution pattern in a cropland–wasteland–fishpond system was carried out in 2022–2023 in a typical study area selected from the Yichang Irrigation Area of the Hetao Irrigation District. A water balance model was established for the cropland–wasteland–fishpond system to analyze the effects of irrigation on soil salinity at the boundaries of the cropland, wasteland, and fishpond. The results showed that the lateral recharge from the cropland to the wasteland during spring irrigation in 2022 was 24 mm, the lateral recharge generated by fishponds to wasteland was 18 mm, and the lateral recharge from fishponds to fishpond boundaries was 34 mm. In the fertility period of 2023, the lateral recharge from cropland to wasteland was 15 mm, the lateral recharge from fishponds to wasteland was 9 mm, and the lateral recharge from fishponds to fishpond boundaries was 21 mm. Due to the low salinity content of fishpond water, it diluted the groundwater of the wasteland, and the soil salinity at the boundary between the wasteland and the fishpond was monitored. The data show that the soil salinity at the boundary of the fishpond was smaller than that of the wasteland, which indicates that the migration of fishpond water to the wasteland will not lead to an increase in the soil salinity of the wasteland, but rather to a decrease in the soil salinity of the wasteland. Fishpond regulation has a significant impact on soil and groundwater, and when the topographic conditions of the Hetao irrigation area allow, the model of cropland–wasteland–fishpond can be appropriately adopted to solve land degradation and increase the economic income of farmers; the results of the study provide a contribution for the improvement of the management of land use and soil salinization in the Hetao irrigation area.