Fish Monitoring Data Research Articles

Temporal Patterns of Fish Occurrence in the Colorado River, Grand Canyon in Response to Temperature, Largescale Drought, and Newly Exposed Habitat

ABSTRACTTwo large dams on the Colorado River, Glen Canyon and Hoover Dam, have profoundly altered the river within Grand Canyon. Owing to widespread drought and increased water usage throughout the Southwest, water levels in Lake Mead declined by over 40 m since 2000, exposing over 80 km of newly emerged riverine habitat in the western Grand Canyon that experiences higher water temperatures and increased turbidity relative to upstream portions of the Colorado River within the Grand Canyon. Our objective was to investigate how the probability of fish occurrence has changed within the Colorado River in Grand Canyon as abiotic conditions have shifted in relation to these altered environmental conditions. We used 22 years of long‐term fish monitoring data, from 2000 to 2022, on the mainstem of the Colorado River in the Grand Canyon to map the probability of occurrence based upon modeled water temperature for native and common nonnative salmonid species through space (river kilometer) and time in relation to declining water levels in Lake Mead. Our results suggest that native fish occurrence is strongly correlated with longitudinally increasing water temperature, while nonnative trout species were negatively correlated with increased water temperature downstream from the dam. Further, we found that nonnative trout species have experienced decreases in their probability of occurrence through time, while natives have experienced an increase in probability of occurrence. Information on distribution of fish prior to reservoir declines, and how the fish assemblage has shifted coincident with environmental changes, can help inform future management of native and nonnative fish in highly regulated river systems.

Factors influencing harvest success for an Arctic under-ice subsistence fishery

Long-term fisheries datasets are particularly rare in Arctic environments and are essential to understanding the variability in harvest rates. We analyzed 30 years of harvest monitoring data and compared results to fish monitoring data from nearshore waters of Prudhoe Bay, Alaska, to determine the importance of age-0 recruitment and intra-annual factors on subsequent harvests of Arctic cisco in the Colville River delta (CRD), Alaska. While age-0 recruitment to Prudhoe Bay was positively associated with annual harvest success in the CRD, wind and salinity patterns and subsistence fishing location and timing also contributed significantly in explaining adult harvest variability. Harvest rates were highest closest to the river mouth and early in the season. Harvest rates increased with increasing salinity up to 25 ppt, then declined. As the climate changes in the region, we may see shifts in nearshore ocean and river conditions which will impact recruitment and fishing activity. These long-term monitoring efforts will continue to inform sustainable fisheries management in the face of a rapidly changing climate, and with ongoing infrastructure development in the region.

Imperfect detection and misidentification affect inferences from data informing water operation decisions

AbstractObjectiveManagers can modify river flow regimes using fish monitoring data to minimize impacts from water management infrastructure. For example, operation of the gate‐controlled Delta Cross Channel (DCC) in California can negatively affect the endangered Sacramento River winter‐run Chinook Salmon Oncorhynchus tshawytscha. Although guidelines have been developed for DCC operations by using real‐time juvenile fish sampling count data, there is uncertainty about how environmental conditions influence fish occupancy and the extent to which those relationships are affected by sampling and identification error.MethodsWe evaluated the effect of environmental conditions, imperfect detection, and misidentification error on salmon occupancy by analyzing data using hierarchical multistate occupancy models. A total of 14,147 trawl tows and beach seine hauls were conducted on 1058 sampling days between October and December from 1996 to 2019. During these surveys, 2803 juvenile winter‐run Chinook Salmon were identified, and approximately 29% of the sampling days had at least one winter‐run juvenile detected.ResultThe probability of misidentifying an individual juvenile winter‐run Chinook Salmon in the field was estimated to be 0.056 based on fish identification examinations and genetic sampling. Occupancy varied considerably and was related to flow characteristics, water clarity, weather, time of year, and whether occupancy was detected during the previous sampling day. However, these relationships and their significance changed considerably when accounting for imperfect detection and the probability of misidentifying individual juvenile salmon. Detection was <0.3 under average sampling conditions during a single sample and was influenced by flow, water clarity, site, and volume sampled.ConclusionOur modeling results indicate that DCC gate closure decisions could occur on fewer days when imperfect detection and misidentification error are not accounted for. These findings demonstrate the need to account for identification and detection error while using monitoring data to assess factors influencing fish occupancy and inform future management decisions.

Is it worth the extra mile? Comparing environmental DNA and RNA metabarcoding for vertebrate and invertebrate biodiversity surveys in a lowland stream.

Environmental DNA (eDNA) metabarcoding has emerged as a promising approach to assess biodiversity and derive ecological status classes from water samples. However, a limitation of eDNA surveys is that detected DNA molecules may originate from other places or even dead organisms, distorting local biodiversity assessments. Environmental RNA (eRNA) metabarcoding has recently been proposed as a complementary tool for more localized assessments of the biological community. In this study, we evaluated the effectiveness of eDNA and eRNA metabarcoding for inferring the richness and species distribution patterns of vertebrates and invertebrates in a Central European lowland river. We collected water samples and analyzed them using a 12S marker for vertebrates and a COI marker for invertebrates. We detected 31 fish, 16 mammal, 10 bird and one lamprey species in the vertebrate dataset. While results were largely consistent, we detected a higher number of species when analysing eRNA (mean = 30.89) than eDNA (mean = 26.16). Also, eRNA detections had a stronger local signature than eDNA detections when compared against species distribution patterns from traditional fish monitoring data. For invertebrates, we detected 109 arthropod, 22 annelid, 12 rotiferan, eight molluscan and four cnidarian species. In contrast to the pattern of vertebrate richness, we detected a higher richness using eDNA (mean = 41.37) compared to eRNA (mean = 22.42). Our findings primarily show that eDNA and eRNA-based detections are comparable for vertebrate and invertebrate taxa. Biological replication was important for both template molecules studied. Signal detections for vertebrates were more localized for eRNA compared to eDNA. Overall, the advantages of the extra steps needed for eRNA analyses depend on the study question but both methods provide important data for biodiversity monitoring and research.

A large-scale passage evaluation for multiple fish species: Lessons from 82 fishways in lowland rivers and brooks

River networks worldwide are highly fragmented and this is particularly prevalent in the human-dominated lowland landscape of the Netherlands. Fishways function as measures to facilitate passage alongside barriers for fish communities and have been evaluated mostly in single case studies. We compared fish monitoring data of 82 fishways with data of fish observed in adjacent water stretches, conducting the first nationwide study on passage for the full spectrum of fish species present. In total, 35 out of 38 (92%) native species recorded in fishways' surroundings used fishways, while per fishway the median was 59% related to a variety of factors (fish behaviour, fishway type, monitoring design). The species using fishways most frequently were perch Perca fluviatilis (71/78 of fishways present), roach Rutilus rutilus (70/79) and gudgeon Gobio gobio (68/77). Logistic regression models showed the effect of monitoring duration and timing in detecting specific fish species ascending fishways. This large-scale analysis highlights the need to consider all native fish species during the design and monitoring of fishways. The obtained information from this study can be used by water managers for improving monitoring schemes and river connectivity which is an essential component for achieving the European Water Framework Directive goals.

Influence of fishery management on trophic interactions and biomass fluxes in Lake Taihu based on a trophic mass-balance model exercise on a long-term data series

With increasing anthropogenic activities, freshwater ecosystems around the world are becoming increasingly affected by various pressures, including eutrophication, overfishing, and irrational stocking, which may have a negative impact on the food web structure. Despite the extensive research and proposed management measures for eutrophic lakes, there are only few analysis on long-term monitoring data regarding fishery resources. Additionally, there is a lack of evaluation and prediction of the effectiveness of current fish management policies. To remedy this, we analyzed long-term monitoring data from Lake Taihu, China, a severely eutrophicated lake with a skewed fish size structure exhibiting dominance of small individuals. We first constructed 14 Ecopath models to investigate how trophic interactions and biomass fluxes changed from 2007 to 2020. Subsequently, the Ecosim model was used to predict how the biomass of fish and the ecosystem network respond to the initiated 10-years fishing ban. Our results demonstrate long-term changes in fish biomass and ecosystem stability. The analyses revealed that 1) the biomass development in different feeding types of fish is controlled by human activities (mainly catches and stocking) and trophic interactions and 2) the rate of decline in ecosystem network stability slows down during the fishing ban. The primary focus of this study was to fill the gap in long-term serial studies of fish monitoring data and ecosystem stability in the lake and, for the first time, to predict the outcome of the fishing ban from an ecosystem perspective using the Ecosim model. Overall, our results emphasize the importance of rational stocking and fishing policies and provide a better understanding of the changes in the ecological dynamics in Lake Taihu of relevance for the management and restoration of the lake.

No evidence of sustained recovery of native trout in response to angling suppression of invasive Brook Trout

AbstractObjectiveNonnative fish invasions have had widespread impacts on freshwater ecosystems, including effects on native fish biodiversity and persistence. Brook Trout Salvelinus fontinalis were first introduced into the Elbow River watershed (Alberta, Canada) in the 1940s. They have since become established in Quirk Creek, and they dominated the fish community by the mid‐1990s, raising concern about the native populations of Westslope Cutthroat Trout Oncorhynchus clarkii lewisi and Bull Trout S. confluentus.MethodsA targeted angling program was operated from 1998 to 2015, along with limited electrofishing removals, to suppress the Brook Trout population. We used 25 years of fish monitoring data from 1978 to 2020 to evaluate the program's effectiveness for reducing the Brook Trout population and the program's consequences for native trout.ResultDensities of Brook Trout larger than 150 mm declined after the onset of the suppression project, and the decline was attributed to removals through angling. However, Brook Trout recruitment remained comparable to presuppression levels. Westslope Cutthroat Trout recruitment increased during and after Brook Trout suppression. Densities of Westslope Cutthroat Trout larger than 150 mm increased during the suppression period but did not reach density goals targeted for recovery of the species. Bull Trout remained at very low densities throughout the suppression project.ConclusionThe lack of native trout recovery during the suppression project was hypothesized to result from (1) incidental release mortality of native trout, (2) Brook Trout suppression that was insufficient to prompt an effective response in native trout populations, or (3) a combination of these factors. Continued low densities of Brook Trout larger than 150 mm and native trout after the end of the suppression project (when harvest and incidental release mortality were alleviated) may point to some other factor impacting the recovery of trout larger than 150 mm, particularly Westslope Cutthroat Trout, since recruitment was at its highest during this period. Overall, angling was not considered an effective method for promoting native trout recovery, and other techniques should be pursued depending on management goals.

Broad-scale analysis of fish community data suggests critical need to support regional connectivity of coral reefs.

Connectivity is vital for the biodiversity and functioning of marine ecosystems. It is known to be important for coral reefs, but the scales at which connectivity effects matter-and, correspondingly, the scales at which management responses are needed-are poorly understood in marine systems. We used 23 years of fish monitoring data collected from ~50 different coral reefs by the Australian Institute of Marine Science, together with a range of geographic data layers (including the Allen Coral Atlas) and additional network analysis, to explore the balance of local and regional influence on fish communities. Variance partitioning indicated that 42% of the variance in fish community composition could be explained by regional effects or their interaction with coarse-grained local influences (habitat). The variance explained by regional influences was divided evenly between measures that capture location on environmental gradients (e.g., proximity to coastal shelf, latitude) and cross-scale centrality measures of reef location within a broader reef network. A total of 11% of variance could be directly or indirectly attributed to management. Our results provide clear evidence that management and restoration of reefs across the globe must consider both local and regional influences on reef-associated organisms and highlight the potential benefits of improving connectivity in human-dominated coastal seascapes.

Life‐history traits and temporal patterns in the incidence of coastal fishes experiencing tropicalization

AbstractClimate change is causing shifts in the geographic distributions of coastal fish species toward higher latitudes. However, local fish communities found in higher latitudes today are not simply those found in lower latitudes in the past because the sensitivity of species to various environmental conditions is different. Responses of fish to environmental conditions differ depending on their life‐history traits such as the maximum population growth rate, age of maturity, and generation time because these traits are constrained by environmental conditions. Here, we investigate associations among temporal patterns in presence–absence (incidence) data, life‐history traits of species, and environmental conditions to elucidate the potential mechanisms behind the effects of climate change on coastal fish communities. In this study, fish monitoring data collected semi‐monthly between 1982 and 2019 from eight major bays in the northwestern Gulf of Mexico were analyzed with generalized additive models. Smooth patterns over seasons and years in the incidence data of 77 species were estimated, and the data were associated with environmental variables. Further, these temporal patterns were associated with the life‐history traits of species. The results show that species that are more common in the summer months (non‐winter spawners) tend to exhibit an increasing trend and that species common during the spring (winter spawners) tend to exhibit a decreasing trend, suggesting the importance of summer conditions in driving tropicalization. Salinity had significant effects on species in general, and longer‐lived species tended to be affected by temperature. These results suggest seasonal differences in the effects of environmental conditions and variation in sensitivity to environmental conditions among different life‐history strategies. These findings represent major steps toward understanding the mechanisms behind the tropicalization of estuarine communities.

Evaluation of Classification Algorithms to Predict Largemouth Bass (Micropterus salmoides) Occurrence

This study aimed to evaluate classification algorithms to predict largemouth bass (Micropterus salmoides) occurrence in South Korea. Fish monitoring and environmental data (temperature, precipitation, flow rate, water quality, elevation, and slope) were collected from 581 locations throughout four major river basins for 5 years (2011–2015). Initially, 13 classification models built in the caret package were evaluated for predicting largemouth bass occurrence. Based on the accuracy (>0.8) and kappa (>0.5) criteria, the top three classification algorithms (i.e., random forest (rf), C5.0, and conditional inference random forest) were selected to develop ensemble models. However, combining the best individual models did not work better than the best individual model (rf) at predicting the frequency of largemouth bass occurrence. Additionally, annual mean temperature (12.1 °C) and fall mean temperature (13.6 °C) were the most important environmental variables to discriminate the presence and absence of largemouth bass. The evaluation process proposed in this study will be useful to select a prediction model for the prediction of freshwater fish occurrence but will require further study to ensure ecological reliability.

Evaluation of By-Pass Fishway Operation for Attraction Efficiency Based on GPS Drifter Field Experiments

The attraction efficiency of a by-pass fishway installed at Gangjeong-Goryeong Weir on the Nakdong River in South Korea was evaluated according to flow rate variation of the main channel. Optimal flow rate that achieved the maximum value of attraction efficiency at the fishway entrance was also determined. The weir can adjust the flow rate of the main channel and the fishway by operating sluice gates. The weighted usable area (WUA) calculated on the basis of habitat suitability criteria (HSC) for target species using River2D (a two-dimensional physical habitat model) was regarded as an indicator of attraction efficiency. The simulated velocity field by River2D was validated by virtue of measured data acquired from GPS drifter field experiments. Additionally, monthly fish monitoring data obtained with a fish trap served as supporting data to confirm the validity of the estimated attraction efficiency. The monitoring results revealed that the fishway attraction efficiency was the highest during the spawning season (from April to June). The target fish used the fishway most frequently in April. However, many other fish species used the fishway in June. Simulation results revealed that the flow rate of the main channel at the weir should be maintained at 190 m3/s in order to most effectively attract the target fish species into the fishway entrance. Managing the optimal flow rate by operating the sluice gate is especially important during the spawning season of the target fish to facilitate upstream and downstream migration.

Resistance and resilience of pelagic and littoral fishes to drought in the San Francisco Estuary.

Many estuarine ecosystems and the fish communities that inhabit them have undergone substantial changes in the past several decades, largely due to multiple interacting stressors that are often of anthropogenic origin. Few are more impactful than droughts, which are predicted to increase in both frequency and severity with climate change. In this study, we examined over five decades of fish monitoring data from the San Francisco Estuary, California, USA, to evaluate the resistance and resilience of fish communities to disturbance from prolonged drought events. High resistance was defined by the lack of decline in species occurrence from a wet to a subsequent drought period, while high resilience was defined by the increase in species occurrence from a drought to a subsequent wet period. We found some unifying themes connecting the multiple drought events over the 50‐yr period. Pelagic fishes consistently declined during droughts (low resistance), but exhibit a considerable amount of resiliency and often rebound in the subsequent wet years. However, full recovery does not occur in all wet years following droughts, leading to permanently lower baseline numbers for some pelagic fishes over time. In contrast, littoral fishes seem to be more resistant to drought and may even increase in occurrence during dry years. Based on the consistent detrimental effects of drought on pelagic fishes within the San Francisco Estuary and the inability of these fish populations to recover in some years, we conclude that freshwater flow remains a crucial but not sufficient management tool for the conservation of estuarine biodiversity.

Selection and application of trophic magnification factors for priority substances to normalize freshwater fish monitoring data under the European Water Framework Directive: a case study

BackgroundThe European Water Framework Directive (WFD) requires the monitoring of biota—preferably fish—to check the compliance of tissue concentrations of priority substances (PS) against substance-specific environmental quality standards (EQSs). In monitoring programs, different fish species are covered, which often are secondary consumers with a trophic level (TL) of about 3. For harmonization, a normalization of monitoring data to a common trophic level is proposed, i.e., TL 4 (predatory fish) in freshwaters, so that data would be sufficiently protective. For normalization, the biomagnification properties of the chemicals can be considered by applying substance-specific trophic magnification factors (TMFs). Alternatively, TL-corrected biomagnification factors (BMFTLs) may be applied. Since it is impractical to derive site-specific TMFs or BMFTLs, often data from literature will be used for normalization. However, available literature values for TMFs and BMFTLs are quite varying. In the present study, the use of literature-derived TMFs and BMFTLs in data normalization is studied more closely.ResultsAn extensive literature evaluation was conducted to identify appropriate TMFs for the WFD PS polybrominated diphenyl ethers (PBDE), hexachlorobenzene, perfluorooctane sulfonate (PFOS), dioxins and dioxin-like compounds (PCDD/F + dl-PCB), hexabromocyclododecane, and mercury. The TMFs eventually derived were applied to PS monitoring data sets of fish from different trophic levels (chub, bream, roach, and perch) from two German rivers. For comparison, PFOS and PBDE data were also normalized using literature-retrieved BMFTLs.ConclusionsThe evaluation illustrates that published TMFs and BMFTLs for WFD PS are quite variable and the selection of appropriate values for TL 4 normalization can be challenging. The normalized concentrations partly included large uncertainties when considering the range of selected TMFs, but indicated whether an EQS exceedance at TL 4 can be expected. Normalization of the fish monitoring data revealed that levels of substances accumulating in the food web (TMF or BMF > 1) can be underestimated when relying on fish with TL < 4 for EQS compliance assessment. The evaluation also revealed that TMF specifically derived for freshwater ecosystems in Europe would be advantageous. Field-derived BMFTLs seemed to be no appropriate alternative to TMFs, because they can vary even stronger than TMFs.

Evaluation of a large-scale flow manipulation to the upper San Francisco Estuary: Response of habitat conditions for an endangered native fish.

While flow is known to be a major driver of estuarine ecosystems, targeted flow manipulations are rare because tidal systems are extremely variable in space and time, and because the necessary infrastructure is rarely available. In summer 2018 we used a unique water control structure in the San Francisco Estuary (SFE) to direct a managed flow pulse into Suisun Marsh, one of the largest contiguous tidal marshes on the west coast of the United States. The action was designed to increase habitat suitability for the endangered Delta Smelt Hypomesus transpacificus, a small osmerid fish endemic to the upper SFE. The approach was to operate the Suisun Marsh Salinity Control Gates (SMSCG) in conjunction with increased Sacramento River tributary inflow to direct an estimated 160 x 106 m3 pulse of low salinity water into Suisun Marsh during August, a critical time period for juvenile Delta Smelt rearing. Three-dimensional modeling showed that directing additional low salinity water into Suisun Marsh ("Flow Action") substantially increased the area of low salinity habitat for Delta Smelt that persisted beyond the period of SMSCG operations. Field monitoring showed that turbidity and chlorophyll were at higher levels in Suisun Marsh, representing better habitat conditions, than the upstream Sacramento River region throughout the study period. The Flow Action had no substantial effects on zooplankton abundance, nor did Suisun Marsh show enhanced levels of these prey species in comparison to the Sacramento River. Fish monitoring data suggested that small numbers of Delta Smelt colonized Suisun Marsh from the Sacramento River during the 2018 Flow Action. Comparison of the salinity effects of the Flow Action to historical catch data for Suisun Marsh further supported our hypothesis that the Flow Action would have some benefit for this rare species. Our study provides insight into both the potential use of targeted flow manipulations to support endangered fishes such as Delta Smelt, and into the general response of estuarine habitat to flow management.

The significance of the ecosystem value and its effect on the fish distribution in Sibau sub-watershed

Betung Kerihun National Park (TNBK) is the largest conservation area in West Kalimantan which has an area of 816,693.40 ha with high species diversity, both flora and fauna. One of the constituent ecosystems in TNBK region is its watershed. TNBK region has four sub-watershed which acts as a receiving area and divert rain water from tributaries to the main river (Kapuas River), namely Embaloh, Sibau, Mendalam and Kapuas sub-watersheds. The objective of this study is to evaluate the sub-watershed ecosystem value which affect to distribution of the fish. The Sibau sub-watershed, one of the four sub-watersheds in TNBK plays as supporting ecosystems which have a high influence on the distribution of fish species. This zone also has a function as a site for the local people activity and become as a buffer area. Fish monitoring data in 2018 conducted on three rivers i.e. Peang River, Menyakan River and Sibau River which locateson the traditional zones show a high status indiversity. There are 25 species of fish which successfully recorded in the fish distribution monitoring with a total of 242 individuals. The common species were Batu fish (Labocheilos falcifer), Seluang fish (Rasbora voltzii), and Kenyuar fish (Luciosioma setigerum). The biophysical conditions of the river in the Sibau sub-watershed seem suitable for the habitat of many fish species. The determinant factors were water temperature, turbidity, river canopy and pH. The obtained fish can also be categorized as a bioindicators of a waters by considering of those aspects. Most of the fish species are directly or indirectly dependent on the forest or river in providing food such as plant materials (leaves, flowers, fruits) or invertebrates. Sibau sub-watershed has a rich of vegetation, as well the type of alluvial soils that make up the land. The alluvial soils have better fertility rates than other types of soils. In addition, high rainfall (2,863 - 5,517 mm/year) and dense river canopy also have an important influence on fish life in the Sibau sub-watershedwaters.

Estuarine-terrestrial habitat gradients enhance nursery function for resident and transient fishes in the San Francisco Estuary

Nursery functions of US West Coast drowned river valley estuaries are not well understood. Using long-term fish-monitoring data (1995-2017) in Suisun Marsh, San Francisco Estuary, California, USA, we examined spatial and temporal trends in abundance and apparent growth of fishes with diverse life-history types. Focal species were Sacramento splittail Pogonichthys macrolepidotus, striped bass Morone saxatilis, tule perch Hysterocarpus traski, and starry flounder Platichthys stellatus, which collectively represented 55% of total catch (n = 140092). We identified keystone habitat patches that functioned as nursery hotspots during the peak young-of-the-year recruitment window. Deep, flow-through sloughs close to the open estuary were important nursery habitats for the marine transient starry flounder. In contrast, splittail and striped bass mostly migrated through such corridors to rear in shallow, dead-end sloughs bisecting tidal marsh plains, managed tidal ponds, and uplands. Tule perch were concentrated in shallow, interior sloughs, reflecting their resident life-history type and adaptations to variable conditions in a small home range. Interactions among freshwater flows and stationary habitat features (e.g. channel depth, land-to-open-water ratio) were related to fish abundance; however, species and age classes differed in their relationships to these interactions, suggesting a mechanism for habitat partitioning in space and time. Overall, we inferred that habitat connectivity—longitudinal, lateral, and vertical—along the estuarine-terrestrial gradient was a driver of fish species diversity and productivity. Consideration of seascape-landscape dynamics across multiple spatial and temporal scales in estuaries should help maintain or increase fish populations and ecological resilience in the face of rising sea levels and other environmental stressors.

Changes in Fish Assemblages after Dike Construction in the Saemangeum Area

In the Saemangeum area, construction of a dike began in 1991 and was completed in 2006; desalination is currently being conducted. In order to investigate the influence of dike construction on fish assemblages, we analyzed the changes in fish assemblages using fish monitoring data accumulated before, during, and after construction of the Saemangeum Dike. Analysis of changes in the salinity of the Saemangeum Reservoir between 1997 and 2014 revealed that the overall salinity decreased, and this pattern became evident after completion of the dike. Long-term changes in fish assemblages were also confirmed in freshwater areas (Mankyeong and Dongjin Rivers) and the Saemangeum Reservoir. In freshwater areas, different fish assemblages were collected before and after dike construction according to NMDS analysis, and the proportion of freshwater fish continuously increased during analysis of ecological types. In the Saemangeum Reservoir, differences in fish assemblages were observed before, during, and after dike construction (PERMANOVA, F = 2.5325, P = 0.017). Moreover, the numbers of families and species decreased during dike construction; in terms of species composition, the proportion of brackish water fish increased, while that of marine fish decreased. Currently, a salinity gradient exists in the Saemangeum area between the rivers and the dike, and the M1-3 and D1-3 sites were classified as freshwater sites. Desalination is expected to increase freshwater areas in the future; as the change will happen over a very long period of time, differentiated management plans for each site of the Saemangeum area should be implemented through continuous monitoring.

Community Patterns and Environmental Associations for Pelagic Fishes in a Highly Modified Estuary

AbstractUnderstanding how natural and human‐induced processes interact to influence ecosystem responses is essential for their effective management and conservation. Long‐term environmental degradation of the upper San Francisco Estuary, California, has resulted in numerous species declines. In this study, we used pelagic fish monitoring and hydrodynamic data during winter–spring 2002–2014 to evaluate how natural and human‐induced environmental changes in the upper San Francisco Estuary may have influenced the distribution, abundance, and community structure of the pelagic fishes. Delta outflow and turbidity tended to decline and salinity tended to increase since the early 2000s. Twelve of the 27 pelagic fish species sampled were introduced, most of which were freshwater‐dominant species in highly altered upstream areas. Overall mean relative abundance was similar between native and introduced fishes across all study areas. The upstream distribution of the eight most abundant pelagic fishes was generally associated with their salinity habitat components. Among these species, the Delta Smelt Hypomesus transpacificus and the introduced Threadfin Shad Dorosoma petenense had the highest rates of population decline over the period 2002–2014 and the largest relative increase in salinity predicted in their habitats due to hydrological alteration. Community structure was significantly related to abiotic factors (water temperature, salinity, and turbidity) and spatiotemporal variation (longitude and month), which accounted for 30–33% of the variation. Low to intermediate outflows due to droughts and water diversions since the early 2000s likely interacted synergistically with multiple factors, decreasing the abundance of several pelagic species. Management actions linking ecologic, hydrologic, and geomorphic processes with multiple stressors could help to reverse the long‐term decline of Delta Smelt and other threatened and endangered fishes in the San Francisco Estuary.

Testing an environmental flow-based decision support tool: Evaluating the fish model in the Murray Flow Assessment Tool

Robust environmental decision support tools are critical to maximise the ecological benefit of management decisions. However the models that underpin these rarely undergo rigorous evaluation. Here, we evaluated components of a scenario-based habitat suitability model, the Murray Flow Assessment Tool, by correlating model outputs against fish monitoring data collected since its development. Overall, we detected a low correlation between habitat suitability scores for fish and fish assemblages during low-flow conditions, including when lags in fish response to hydrological inputs were introduced. Scores specific to fish functional groups were also poorly correlated with data for those groups. Finally, model outcomes were highly sensitive to methods used to combine both individual indices and weightings for each component. Thus, we recommend using constant weightings, simple and consistent combination methods and reconsidering the number of fish functional groups as simplifications to this model and in the development of similar habitat suitability models elsewhere.

Comprehensive analysis of >30 years of data on stream fish population trends and conservation status in Bavaria, Germany

Freshwater fishes are among the most threatened groups of vertebrates, with 39% of all European fish species facing extinction. Herein, we provide a comprehensive analyses of historical data as well as fish monitoring data from 1989 through 2013 from Bavaria, Germany. The results of this study indicate that the most pronounced species-turnover already had occurred before the 1990s. Severe loss of species (21 out of 69 species lost until 1990s), decrease in spatial distribution (51 species, 27 reduced to <50% of historical distribution), decrease of abundance, shifts towards potamal species and the establishment of novel communities due to increasing colonization with non-native species was evident. Declines were strongest for gravel-spawning species of the hyporhitral and epipotamal in medium-sized and large rivers (e.g. grayling (Thymallus thymallus), nase (Chondrostoma nasus), barbel (Barbus barbus)), suggesting that effects of increasing water temperatures and increased fine sediment loads probably strongly contribute to the decline of those species. Our results generally confirmed the validity of current conservation status for most species, but also identified species (dace (Leuciscus leuciscus), chub (Squalius cephalus), trout (Salmo trutta), minnow (Phoxinus phoxinus), nase and barbel) and habitats (medium-sized and large rivers) that deserve higher priority in conservation management. More consistent sampling of the same sites over years and a quantitative monitoring of environmental impact factors in appropriate spatial and temporal resolution is crucial to allow a future prioritization in freshwater fish conservation.