Groups Of Fish Research Articles

Avalanche dynamics of zebrafish schools: Unveiling self-organization and phase transitions

Collective behavior in animal groups exhibits intriguing dynamics that can be analyzed through the lens of self-organized criticality. In this context, we analyze behavioral cascades in zebrafish (Danio rerio) groups of varying sizes within controlled tank environments. Through experimental observations and data analysis, we unveil scale-free signatures reminiscent of self-organized critical processes in the collective movement of zebrafish. Notably, as fish density varies, we observe a dynamic phase transition: at low densities, coordinated and highly polarized movement dominates, while at high densities, the group fractures into uncorrelated domains. These findings shed light on the complex dynamics of collective behavior in fish groups and provide valuable insights into the responses of individuals to environmental stimuli. Moreover, the observed phase transition highlights the sensitivity of zebrafish behavior to changes in population density, which has implications for understanding collective behavior in various contexts, from ecological systems to preclinical studies. Finally, we compare our findings with the known results of avalanche analyses of collective motion and neuronal activity. All follow the same power law, indicating a possible universality in one parameter of avalanche processes.

Genomic structures of insulin-like growth factor from golden pompano (Trachinotus ovatus) and their expression responses to the feed types.

Golden pompano is an important aquaculture product in the coastal regions of southern China, which is highly dependent on insulin-like growth factor (IGF) for various biological processes. The cDNAs of ToIGF1, ToIGF2, and ToIGF3 are 1718bp, 1658bp, and 2272bp in length, respectively, with corresponding amino acid sequences of 185 aa, 215 aa, and 194 aa. These sequences consist of 5 parts, including the signal peptide, the B domain, the C domain, the A domain, the D domain, and the E domain, which are also found in other species. While ToIGF1 has no SSR polymorphism, ToIGF2 and ToIGF3 have 3 and 1 SSR polymorphism sites, respectively. In terms of tissue expression, ToIGF1 is predominantly expressed in the liver, ToIGF2 shows its highest expression in the gills, and ToIGF3 also shows its highest expression in the gills, but no expression in the liver and spleen. These tissue distribution results suggest that ToIGFs are not only present in growth-related tissues such as the brain, muscle, and liver, but also in reproductive tissues, tissues that regulate osmotic pressure, and tissues related to food intake. This observation is consistent with other bony fish species and highlights the extensive biological functions of ToIGFs that need to be further explored and exploited. In addition, the expression levels of ToIGFs were found to be different in the different dietary groups, including the pelleted food group, the frozen squid group, and the frozen fish group. In the pelleted diet group, ToIGF1 and ToIGF2 were highly expressed in the liver and intestinal tissues, followed by the frozen fish group. These results suggest that the type of diet can affect the body's energy metabolism by influencing tissue expression of growth-related genes, which in turn affects individual growth.

Integrating Genetic and Cytogenetic Data: A Diversity Study of Astyanax and Psalidodon (Characidae) Species from the Paraná River Basin.

Astyanax is one of the most specious fish groups in the Neotropical region, with many cryptic species, which represents a challenge for correct identification through traditional taxonomic methods. Psalidodon is a recently resurrected genus group of species previously belonging to Astyanax, specifically those with extensive chromosomal variation of the A. scabripinnis and fasciatus complexes. In the present study, the mitochondrial genes cytochrome c oxidase subunit 1 (COI), mitochondrial ATP synthase 6 and 8 (ATPase 6/8), and NADH dehydrogenase subunit 2 (ND2) were used in conjunction with chromosomal data to characterize molecularly and cytogenetically populations of Astyanax and Psalidodon from rivers and streams of the Ivaí River Basin (Paraná Basin). The results demonstrated the effectiveness of the integrative use of molecular and cytogenetic techniques, with the confirmation of at least three species for the sampled sites: A. lacustris, P. paranae, and P. fasciatus, which showed inter- and intrapopulation karyotype variations. In addition, extensive haplotypic variation can be observed for these species within the Ivaí River Basin and throughout the Paraná River Basin. The data demonstrate a hidden diversity among the species analyzed, enrich the ichthyofaunistic knowledge of small rivers and streams, and contribute to future conservation projects in these areas.

Molecular characterization of the SP3a gene, a negative regulator of viral infection in the orange-spotted grouper, Epinephelus coioides

SP3 (specificity protein 3) is a transcription factor characterized by three conserved Cys2His2 zinc finger motifs that exert a transregulatory effect by binding to GC boxes, either upregulating or downregulating multiple genes or by co-regulating gene expression in coordination with other proteins. SP3 potentially regulates a series of processes, such as the cell cycle, growth, metabolic pathways, and apoptosis, and plays an important role in antiviral effect. The function of sp3 in fish is poorly understood. In this study, the Sp3a open reading frame was cloned from the orange-spotted grouper, Epinephelus coioides. The full-length open reading frame of Sp3a was 2034 bp, encoding 677 amino acids, with a predicted molecular weight of 72.34 kDa and an isoelectric point of 5.05. Phylogenetically, Sp3a in Epinephelus coioides was the most closely related to Sp3a in the Malabar grouper, Epinephelus malabaricus. RT-qPCR revealed ubiquitous expression of Sp3a in all examined grouper tissues, with no significant differences in expression levels among tissues. A eukaryotic expression vector, pEGFP-Sp3a, was constructed and transfected into grouper spleen (GS) cells. Subcellular localization of Sp3a was observed using an inverted fluorescence microscope. When Spa3 was overexpressed in GS cells, the expression of orange-spotted grouper nerve necrosis virus (RGNNV) genes (CP and RdRp) decreased significantly, indicating that Sp3a significantly inhibited RGNNV replication. siRNA inhibition of Sp3a accelerated the intracellular replication of RGNNV, implying the antiviral effect of Sp3a. Conclusively, our findings contribute to further research on the antiviral capabilities of Sp3a in grouper and other fish. Therefore, our research has potential implications on the development of the aquaculture industry.

Diversity and ecological drivers of fish in Singkil Swamp Wildlife Reserve, Aceh, Indonesia

Abstract. Rohim N, Sulistiono, Yulianda F, Muhtadi A. 2024. Diversity and ecological drivers of fish in Singkil Swamp Wildlife Reserve, Aceh, Indonesia. Biodiversitas 25: 2849-2856. Singkil Swamp Wildlife Reserve (SSWR) is a conservation area in Aceh Singkil District, Aceh, Indonesia, that has an important role in maintaining the sustainability of fisheries resources on the Singkil coast. This study analyzes fish biodiversity and ecological factors influencing fish distribution in SSWR waters. The data were collected at five stations (Station I and II in the watershed area while Station III, IV, and V in peat swamp area) every month from April to October 2021 (7 months), consisting of fish biodiversity and aquatic ecological characteristics. The data obtained were analyzed using an index of diversity, evenness, dominance, frequency of presence, and Canonical Correspondence Analysis (CCA). Fish biodiversity in the SSWR utilization area consists of 26 species, including 14 families and 19 genera. Station I (in the Alas-Singkil River) has a higher diversity value and is dominated by the white fish group compared to Stations II, III, IV, and V (in the Lae-Treup River), which the black fish group dominates. Based on ecological characteristics, the distribution of fish species in SSWR is divided into four groups. The first and second groups of fish were positively correlated with high pH and DO, while the third and fourth groups tended to have negative correlation values.

Identification and characterization of four Bacillus species from the intestine of hybrid grouper (Epinephelus fuscoguttatus♀ × E. lanceolatus♂), their antagonistic role on common pathogenic bacteria, and effects on intestinal health

As an alternative to the criticized antibiotics, probiotics have been adopted for their eco-friendly nature and ability to enhance host growth and immunity. Nevertheless, reports suggest ineffectiveness in commercially available probiotics since most are from non-fish sources; thus, this study was envisaged to isolate and characterize new Bacillus spp. from the gut of hybrid grouper (Epinephelus fuscoguttatus♀ × Epinephelus lanceolatus♂) which could serve as potential probiotics. The isolation and characterization were performed based on their morphological and biochemical properties, and 16S rRNA sequencing homology analysis. A subsequent 30-day in vivo biosafety feeding trial was conducted to ascertain isolates' non-pathogenicity, as well as their effects on fish growth, and intestinal mucosal microvilli via scanning electron microscopy (SEM) analysis. Four Bacillus spp. strains, namely, B. velezensis strain PGSAK01 (accession number OQ726606), B. stercoris strain PGSAK05 (accession number OQ726607), B. velezensis strain PGSAK17 (accession number OQ726601), and B. subtilis strain PGSAK19 (accession number OQ726605), were identified and characterized in the current study. The strains showed promising probiotic properties such higher adhesion capability, higher thermotolerance, displaying higher survivability to 0.5 % bile, lower pH tolerance, γ-haemolytic activity, and multispecies characteristics. Among the 24 antibiotics tested, while all isolates showed susceptibility to 21, the PGSAK01 strain showed resistance to furazolidone antibiotics. None of the isolates showed possession of i) virulence factor genes encoding enterotoxigenic (hblA, hblC, hblD, nheA, nheB, and entFM) and emetic (cereulide synthetase gene, ces) genes, and ii) streptomycin resistance gene (vat c), ampicillin-resistant genes (mecA and bla), and vancomycin-resistant gene (van B). Nevertheless, the PGSAK01 and PGSAK17 strains showed possession of tek K, cat, and ant(4′)-Ia (adenylyltransferase) (except the PGSAK01) resistant genes. All isolates displayed better antimicrobial effects against pathogenic bacteria Streptococcus agalactiae, S. iniae, Vibrio harveyi, and V. alginolyticus. The in vivo biosafety trial involved hybrid grouper fish being grouped into five (average weight 32 ± 0.94 g), namely, the group fed the basal diet void of isolate's supplementation (control), and the remaining four groups fed the basal diet with 1 × 108 CFU/g diet of individual strain PGSAK01, PGSAK05, PGSAK17, and PGSAK19 supplementation. At the end of the study, a significantly higher WGR, K (except the PGSAK01 group), VSI; lysozyme (except PGSAK01 group), total antioxidant activity, alkaline phosphatase, superoxide dismutase enzyme activities; highly dense intestinal mucosal villi (based on the scanning electron microscopy analysis); and significantly lower malondialdehyde levels were witnessed in the isolated treated groups compared to the control, supporting the results obtained in the auto-aggregation and cell-surface hydrophobicity test. This work's results have provided thought-provoking targets; thus, studies involving extensive genome sequencing and functional annotation analysis will be explored to offer unfathomable insights into their mechanisms of action and potential health benefits, further establishing the four Bacillus strains' (PGSAK01, PGSAK05, PGSAK17, and PGSAK19) potential role in probiotic fields and functional foods.

Inclusion Effect of Various Levels of Jack Mackerel Meal in Olive Flounder (Paralichthys olivaceus) Diets Substituting 50% Fish Meal with Duck By-Product Meal on Growth and Feed Utilization.

This experiment was performed to evaluate the inclusion impact of various levels of jack mackerel meal (JMM) in olive flounder (P. olivaceus) feeds substituting 50% FM by duck by-product meal (DBM) on growth, feed availability, and economic efficiency. Seven experimental diets were prepared. The control (Con) diet contained 60% FM. Fifty percent FM in the Con diet was substituted with DBM, and then the graded levels (0%, 10%, 20%, 30%, 40%, and 50%) of JMM were added instead of FM, named the DJ0, DJ10, DJ20, DJ30, DJ40, and DJ50 diets, respectively. All feeds were assigned to triplicate fish groups. At the end of 56 days' feeding, fish fed the DJ40 and DJ50 diets exhibited comparable weight gain and specific growth rate to fish fed the Con diet. Higher feed consumption was observed in fish fed the Con, DJ40, and DJ50 diets compared to fish fed the DJ0 and DJ10 diets. Lower feed conversion ratio was observed in fish fed the Con diet compared to fish fed the DJ0, DJ10, DJ20, and DJ30 diets. Furthermore, the DJ50 diet led to the highest economic profit index (EPI). In conclusion, inclusion of 50% JMM in the olive flounder diet replacing 50% FM with DBM seems to be the most recommendable dietary treatment based on growth and feed consumption of olive flounder and EPI.

Unravelling the intricate language of fish guts: Impact of plant-based vs. plant-insect-poultry-based diets on intestinal pathways in European seabass

The long-term sustainability of aquaculture depends on finding economically viable and environmentally friendly feed ingredients to reduce the use of fishmeal and fish oil. An optimal strategy for the industry is not to identify substitutes or alternatives, but to find a combination of complementary raw materials that together meet the specific nutritional requirements for a given farmed fish species. The study aimed to examine the effects of different diets on the pyloric caeca and distal intestine of subadult European seabass (Dicentrarchus labrax) by applying transcriptomics and transmission electron microscopy. The study examined three dietary approaches: the classic fishmeal-based diet, a plant-based diet, and a plant-insect-poultry-based diet. The distal intestine was more sensitive to dietary changes than the pyloric caeca. The differentially expressed genes in both experimental diets were mainly involved in the digestion and absorption of proteins, fats, and vitamins. The overall transcriptomic changes were greater in the plant-based group than in the plant-insect-poultry-based group and included a greater number of overrepresented metabolic and signalling pathways. In contrast to the transcriptomic results, the ultrastructural findings showed decreased inflammation and/or evidence of tissue repair in the plant-based group, particularly in the pyloric caeca. Since the nutritional quality of all fish groups in this study was previously evaluated positively, the detected transcriptome-level changes can serve as evidence supporting the efficient nutrient utilisation and adaptability in European seabass. The study provides valuable insight into the potential benefits and implications of these dietary modifications on intestinal health and pathway regulation in European seabass. This can serve as a basis for further development of sustainable European seabass aquaculture practices and optimisation of diet formulations.

Glycine-replaced epinecidin-1 variant bestows better stability and stronger antimicrobial activity against a range of nosocomial pathogenic bacteria.

Epinecidin-1 (epi-1), an antimicrobial peptide first identified in marine grouper fish, has multifunctional bioactivities. The present study aims to improve its therapeutic potential via structural modifications that could enhance its antimicrobial activity and stability. To achieve it, we replaced glycine and the first histidine in the parent epi-1 with lysine, which resulted in a peptide with a repeating KXXK motif and improved physiochemical properties related to antimicrobial activity. This modified peptide, referred to as glycine-to-lysine replaced-epi-1, also gained stability and a twofold increase in helical propensity. To produce the active peptide, overlap extension PCR was employed to generate the gene of GK-epi-1 via site-directed mutagenesis, which was then cloned into the pET-32a vector and expressed as a recombinant fusion protein in Escherichia coli C43 (DE3) strain. The recombinant protein was purified and digested with enterokinase to release the active peptide fragment, which was then evaluated for antimicrobial activity and stability. The lysine substitution led to an enhancement in broad-spectrum antimicrobial activity against a wide range of nosocomial pathogenic bacteria.

Diet characteristics of tidal creek-associated fishes of the northeastern Arabian Sea with special reference to microplastic ingestion

The present study assessed the diet characteristics, trophic guild structure, and microplastics (MPs) ingestion by a group of fish sourced from the tidal creeks of the Mumbai coast along the Eastern Arabian Sea. The diet patterns were characterized using gastro-somatic index (GaSI), relative length of gut (RGL), diet overlap (α), diet breadth (Bi), and relative abundance of food items (%IOP), with a special emphasis on MPs contamination. The findings revealed that teleost and shrimps are the most preferred food items for these species. Whereas MPs contribute 5.50% of the total diet composition of the selected fishes. Additionally, we tried to find out the influence of fish size and dietary attributes on MP ingestion, identifying trophic level as a significant factor influencing contamination levels. Using the Polymer Hazard Index (PHI), the potential risks posed by MPs in fish samples were assessed, revealing notable discrepancies among polymers. For instance, polyvinyl chloride showed the highest PHI score of 198.75 and a hazard score reaching the highest risk category (IV), indicating substantial environmental risk. In summary, our findings highlight the impact of fish diet characteristics on MPs contamination and the varying levels of MP risks along the Mumbai coast, categorized according to polymer type from low to high risk.

Trophic effects of jellyfish blooms on fish populations in ecosystems of the coastal waters of China

Jellyfish play an important role in the material cycling and energy flow of food webs, and massive aggregations may have deleterious consequences for local fisheries; yet a theoretical framework of the trophic effects of jellyfish blooms on coastal fisheries is unclear. To address this knowledge gap, we assessed the trophic interactions between cooccurring bloom jellyfish and dominant fish groups (omnivorous fish and piscivorous fish) in the coastal waters of China (CWC) via stable isotope analysis; we subsequently discussed how jellyfish blooms may affect energy flow through coastal ecosystems. Our results indicate a considerable degree of trophic overlap (mean ratio > 65 %) between jellyfish and small omnivorous fish (< 10 cm), highlighting a similarity in feeding habits, while the overlap ratio decreased to <55 % of the large omnivorous fish group (> 10 cm). Relatively higher trophic levels and smaller overlaps of large omnivorous fish were found in the ecosystem with high jellyfish biomass, which suggested that they may reinforce the ontogenetic trophic shift pattern to alleviate the potential for resource competition with jellyfish under conditions of jellyfish explosion. The smallest trophic overlap (< 20 %) highlighted the strong trophic differentiation between jellyfish and piscivorous fish. Additionally, our study suggested that a massive aggregation of jellyfish can negatively influence zooplankton but may not transfer energy further up efficiently, implying a weak trophic coupling between jellyfish and upper-trophic levels in CWC ecosystems. Thus, we speculate that jellyfish play an important role in shaping pathways involved in the energy transfer of food webs and that large blooms may negatively affect fisheries through bottom-up control affecting prey availability. In general, these results hold strong potential to further improve the understanding of the trophic interactions between jellyfish and fish populations. Furthermore, this study provides valuable data for predicting the consequences of jellyfish blooms on ecosystems, and is crucial for ecosystem-based management of coastal fisheries.

Medaka liver developed Human NAFLD-NASH transcriptional signatures in response to ancestral bisphenol A exposure.

The progression of fatty liver disease to non-alcoholic steatohepatitis (NASH) is a leading cause of death in humans. Lifestyles and environmental chemical exposures can increase the susceptibility of humans to NASH. In humans, the presence of bisphenol A (BPA) in urine is associated with fatty liver disease, but whether ancestral BPA exposure leads to the activation of human NAFLD-NASH-associated genes in the unexposed descendants is unclear. In this study, using medaka fish as an animal model for human NAFLD, we investigated the transcriptional signatures of human NAFLD-NASH and their associated roles in the pathogenesis of the liver of fish that were not directly exposed, but their ancestors were exposed to BPA during embryonic and perinatal development three generations prior. Comparison of bulk RNA-Seq data of the liver in BPA lineage male and female medaka with publicly available human NAFLD-NASH patient data revealed transgenerational alterations in the transcriptional signature of human NAFLD-NASH in medaka liver. Twenty percent of differentially expressed genes (DEGs) were upregulated in both human NAFLD patients and medaka. Specifically in females, among the total shared DEGs in the liver of BPA lineage fish and NAFLD patient groups, 27.69% were downregulated, and 20% were upregulated. Of all DEGs, 52.31% of DEGs were found in ancestral BPA-lineage females, suggesting that NAFLD in females shared the majority of human NAFLD gene networks. Pathway analysis revealed beta-oxidation, lipoprotein metabolism, and HDL/LDL-mediated transport processes linked to downregulated DEGs in BPA lineage males and females. In contrast, the expression of genes encoding lipogenesis-related proteins was significantly elevated in the liver of BPA lineage females only. BPA lineage females exhibiting activation of myc, atf4, xbp1, stat4, and cancerous pathways, as well as inactivation of igf1, suggest their possible association with an advanced NAFLD phenotype. The present results suggest that gene networks involved in the progression of human NAFLD and the transgenerational NAFLD in medaka are conserved and that medaka can be an excellent animal model to understand the development and progression of liver disease and environmental influences in the liver.

Considerations for protein and amino acids in standardized reference diet for parthenogenetic marbled crayfish Procambarus virginalis model organism

The concept of a standardized reference diet (SRD) is used in laboratory model organisms to ensure nutritional control between studies and laboratories. Although models using the genetically identical, all female parthenogenetic marbled crayfish (Procambarus virginalis) are growing in popularity, research into nutrition in this species still has many knowledge gaps. To fast track the development of a SRD in terms of protein and amino acids (SRDprotein) for this species, we first analyzed the composition of its body amino acids to determine the ideal protein concept (IPC) of indispensable amino acids in wild-caught P. virginalis (which had an unusually high preponderance of leucine and arginine). Then, we strategically evaluated three common clusters of types of fish feed: (1) ornamental fish feed (SER) fortified with a naturally occurring alga (Spirulina). This type of feed was protein-high in arginine and leucine (SER + SPI) that fulfils the species’ IPC for iso-protein (~ 40%), iso-phosphorus (~ 0.8%) and near iso-energetic (~ 475 kcal 100 g−1); (2) freeze-dried live feed consisting of chironomid larvae (CHI) fortified with Spirulina (CHI + SPI) that fulfils the IPC for iso-protein (~ 46%), iso-phosphorus (~ 0.7%) and near iso-energetic (~ 405 kcal 100 g−1); and (3) a commercially standardized ‘starter diet’ for carnivorous fish larvae (FISH) and post-larval shrimps (SHRIMP) with iso-protein (~ 56%) and iso-phosphorus (~ 1.6%). A total of six diets, embracing a diverse range of proteinaceous feeds, were used in a 100-day ad libitum feeding and growth trial. The FISH group outperformed all the other groups (p < 0.05) and our exploratory multivariate analysis revealed an ideal demand of > 44% protein (tailored to deliver high arginine 3% and leucine 4%, followed by the usual lysine > 3.5% and methionine 1.2%) but also the lowest carbohydrate level (21%). For SRDprotein, our findings show that the FISH diet is ideal and suggest the possibilities of using a CHI + SPI diet for further optimization (more economic use of protein and phosphorus).

Study on the Biological Drug Enterocol’s Effect on the Nile Tilapia Breeding

Background Nile tilapia (Oreochromis niloticus) is a promising fish species for fish farming development in the Republic of Kazakhstan. It exemplifies a balanced and fast-growing source of flesh for future food production. In this context, optimising breeding methods is crucial for a high flesh yield and a safe product. The study delves into the potential of the Enterocol drug in enhancing Nile tilapia breeding, focusing on assessing muscle state and blood parameters. Objects Two groups of fish were utilized, with 20 specimens in each group. One set was the control group, and the other was the experimental group. The single difference between the fish groups was the Enterocol consumption by the experimental specimens, which were given an E. coli 64G strain concentration of 108 CFU in mL and a 5% daily dose of fish body weight three times daily for two months. Methods Blood parameters were analysed to assess the health of the fish groups. Subsequently, classical pathological methods were employed, such as macroscopic and microscopic assessments of each group's fish material. A histological analysis was also performed to assess the condition of the muscles. Results Examining the experimental group's muscles revealed a significant average increase in fish mass and 6.74% total body weight growth. Moreover, the total thickness of the muscle layer decreased as villi height increased, indicating a clear fibre structure. Haematological analysis unveiled elevated levels of haemoglobin, erythrocytes, leucocytes, and total protein in the experimental fish group, indicating improved health. These findings underscore the potential of the Enterocol drug in enhancing fish health and productivity. Conclusion Based on the results, it can be concluded that using Enterocol in fish breeding plants can effectively enhance flesh quality and safety, providing a secure and reliable solution for the aquaculture industry.

Metformin improves insulin resistance, liver healthy and abnormal hepatic glucolipid metabolism via IR/PI3K/AKT pathway in Ctenopharyngodon idella fed a high-carbohydrate diet

The effects and underlying mechanisms of metformin which can improve glucose homeostasis of fish have rarely been explored. This experiment aimed to explore the influence of metformin on growth performance, body composition, liver health, hepatic glucolipid metabolic capacity and IR/PI3K/AKT pathway in grass carp (Ctenopharyngodon idella) fed high-carbohydrate diets. A normal diet (Control) and high carbohydrate diets with metformin supplementation (0.00 %, 0.20 %, 0.40 %, 0.60 % and 0.80 %) were configured. Six groups of healthy fish were fed with the experimental diet for eight weeks. The results showed that the growth performance of grass carp was impaired in high carbohydrate diet. Impairment of IR/PI3K/AKT signalling pathway reduced insulin sensitivity, while hepatic oxidative stress damage and decreased immunity affected liver metabolic function. The glycolysis and lipolysis decrease while the gluconeogenesis and fat synthesis increase, which triggers hyperglycaemia and lipid deposition in the body. Metformin supplementation restored the growth performance of grass carp. Metformin improved IR/PI3K/AKT pathway signalling and alleviated insulin resistance, while liver antioxidant capacity and immunity were enhanced resulting in the restoration of liver health. The elevation of glycolysis and lipolysis maintains glycaemic homeostasis and reduces lipid deposition, respectively. These results suggest that metformin supplementation restores liver health and activates the IR/PI3K/AKT signalling pathway, ameliorating insulin resistance and glucose-lipid metabolism disorders caused by a high-carbohydrate diet. As judged by HOMA-IR, the optimum supplementation level of metformin in grass carp (C. idella) fed a high-carbohydrate diet is 0.67 %.

Prolonged Cold Exposure Negatively Impacts Atlantic Salmon (Salmo salar) Liver Metabolism and Function.

Large-scale mortality events have occurred during the winter in Atlantic salmon sea cages in Eastern Canada and Iceland. Thus, in salmon held at 3 °C that were apparently healthy (i.e., asymptomatic) and that had 'early' and 'advanced' symptoms of 'winter syndrome'/'winter disease' (WS/WD), we measured hepatic lipid classes and fatty acid levels, and the transcript expression of 34 molecular markers of fatty liver disease (FLD; a clinical sign of WS/WD). In addition, we correlated our results with previously reported characteristics associated with this disease's progression in these same individuals. Total lipid and triacylglycerol (TAG) levels increased by ~50%, and the expression of 32 of the 34 genes was dysregulated, in fish with symptoms of FLD. TAG was positively correlated with markers of inflammation (5loxa, saa5), hepatosomatic index (HSI), and plasma aspartate aminotransferase levels, but negatively correlated with genes related to lipid metabolism (elovl5b, fabp3a, cd36c), oxidative stress (catc), and growth (igf1). Multivariate analyses clearly showed that the three groups of fish were different, and that saa5 was the largest contributor to differences. Our results provide a number of biomarkers for FLD in salmon, and very strong evidence that prolonged cold exposure can trigger FLD in this ecologically and economically important species.

Evaluation of Gamma Aminobutyric Acid and Sodium Butyrate in Juvenile Red Seabream (Pagrus major) Diets Containing Graded Levels of Fish Meal and Soy Protein Concentrate.

The experiment was conducted to evaluate the supplementary effects of gamma aminobutyric acid (GABA) and sodium butyrate (SB) when a graded level of fish meal (FM) was replaced with soy protein concentrate (SPC) in diets for juvenile red seabream (Pagrus major). A control diet was designed to contain 60% FM (F60). Two other diets were formulated by reducing FM levels to 40% and 20% with SPC (F40 and F20). Six more diets were formulated by adding 0.02% GABA or 0.2% SB to each F60, F40 and F20 diets (F60G, F60S, F40G, F40S, F20G and F20S). Each diet was randomly assigned to a triplicate group of fish (5.52 g/fish) and provided for eight weeks. Final body weight, weight gain and specific growth rate of fish fed F60G, F60S, F40G and F40S diets were comparable and significantly higher (p < 0.05) than other groups. The growth of fish fed SB-containing diets was significantly increased (p < 0.05) compared to fish fed the respective control diets. The feed efficiency and protein efficiency ratios were significantly higher (p < 0.05) in the fish fed all diets containing 60% and 40% FM compared to F20 and F20G groups. The F40S diet resulted in the highest feed utilization values. The F20S group exhibited significantly higher (p < 0.05) feed utilization than the F20 and F20G groups. Serum lysozyme activity was significantly higher (p < 0.05) in fish fed the GABA- and SB-containing diets compared to the F20 group. The F60S group exhibited the highest lysozyme activity which was significantly higher (p < 0.05) than in the F20 and F40 groups. Therefore, the growth performance, feed utilization and innate immunity of red seabream can be enhanced by dietary supplementation with GABA or SB in low-FM diets containing SPC. The FM level in the juvenile red seabream diet can be reduced to 40% with SPC and GABA or SB while maintaining performance better than a diet containing 60% FM.

Fish otoliths from the bathyal Eocene Lillebælt Clay Formation of Denmark.

Few deepwater otolith associations from the Eocene have been found so far. The small assemblage of aragonitic-preserved otoliths from the Lillebælt Clay Formation described here therefore adds to the understanding of early Palaeogene deep-sea fish faunas. These otoliths were obtained from a level at about the Ypresian/Lutetian interface and may thus be older than the otoliths previously described from Trelde Næs from mold casts from carbonate concretions. Only 14 otoliths were recovered from about 6,000 kg processed bulk samples. The assemblage also differs in the composition and contains three new species and one new genus: Diaphus? duplex n. sp., Bregmaceros danicus n. sp. and the ophidiid Pronobythites schnetleri n. gen, n. sp. In addition, the new genus Treldeichthys n. gen. in Acanthomorpha incertae sedis is established for T. madseni (Schwarzhans, 2007). The small assemblage also differs in composition from comparable associations described from southwest France and northern Italy on the species level but shows some relationship on a higher systematic level. The mechanism and timing of the colonization of the deep sea by selected groups of fishes is discussed, particularly in respect to the depth migration of demersal fishes.

Diversity pattern of ichthyofaunal assemblage in South-central coastal region of Bangladesh

The south-central coastal waters of Bangladesh are recognized as one of the foremost aquatic biodiversity hotspots despite severe anthropogenic and environmental hazards to natural fishery resources. Therefore, this study was undertaken to examine the current status of fish faunal diversity and evaluate the condition and conservation status of fish in the rivers spanning the south-central coastal region of Bangladesh. During the research period, spanning from July 2021 to February 2022, a total of 105 fish faunal species belonging to 84 genera, 50 families, and 14 orders were documented. The order Perciformes (27.62%) was found to be the most diverse fish group, followed by Cypriniformes and Scombriformes (12.38%), Siluriformes and Clupeiformes (11.43%), Synbranchiformes and Pleuronectiformes (3.81%). According to the International Union for Conservation of Nature (IUCN) Red List classification, 52 species recorded from the studied areas were determined to be of Least Concern, while 11 species were Vulnerable, 14 species were classified as Endangered, and 7 species are recognized as Critically Endangered. In order to assess the species diversity, richness, and evenness of the fish assemblage in the sampling areas, four diversity indices, viz. the Shannon-Wiener index (H), Simpson’s dominance index (D), Simpson’s index of diversity (1-D), and Margalef’s index (d), were applied. Their overall values were 3.39–3.59, 0.05–0.07, 0.95–0.94, and 7.67–8.75, respectively. All of the species were more or less evenly distributed throughout the three sites, with Kalapara having the most even distribution. Several anthropogenic and natural attributes that contribute to decline in fish diversity were recorded using a survey questionnaire which revealed that management and conservation measures should be taken with utmost urgency.

Modulation of metabolic and immunoregulatory pathways in the gut transcriptome of Atlantic salmon (Salmo salar L.) after early nutritional programming during first feeding with plant-based diet.

Plant-based nutritional programming is the concept of exposing fish at very early life stages to a plant-based diet for a short duration to improve physiological responses when exposed to a similar plant-rich diet at a later developmental stage. The mechanisms of action underlying nutritional programming have not been fully deciphered, and the responses may be controlled at multiple levels. This 22-week study examines gut transcriptional changes after nutritional programming. Triplicate groups of Atlantic salmon were fed with a plant (V) vs. a marine-rich (M, control) diet for 2 weeks (stimulus phase) at the first exogenous feeding. Both stimulus fish groups (M and V fish) were then fed the M diet for 12 weeks (intermediate phase) and lastly fed the V diet (challenge phase) for 6 weeks, generating two dietary regimes (MMV and VMV) across phases. This study used a whole-transcriptome approach to analyse the effects of the V diet at the end of stimulus (short-term effects) and 22 weeks post-first feeding (long-term effects). After the stimulus, due to its developmental stage, the whole intestine was used, whereas, after the challenge, pyloric caeca and middle and distal intestines were examined. At the stimulus end, genes with increased expression in V fish enriched pathways including regulatory epigenetic responses and lipid metabolism, and genes involved in innate immune response were downregulated. In the middle intestine at the end of the challenge, expression levels of genes of lipid, carbohydrate, and energy metabolism were increased in V fish, while M fish revealed increased expression of genes associated with autoimmune and acute adaptive immune response. The distal intestine of V fish showed increased expression of genes associated with immune response and potential immune tolerance. Conversely, the distal intestine of M fish at challenge revealed upregulation of lipid and carbohydrate metabolic pathways, tissue degeneration, and apoptotic responses. The present study demonstrated nutritional programming-associated changes in the intestinal transcriptome, with altered expression of genes involved in both immune responses and different metabolic processes. While there were limited changes in growth between the groups, the results show that there were transcriptional differences, suggesting a programming response, although the mechanism of this response still requires to be fully elucidated.