AbstractIn this paper a finite element method is presented to predict internal subsonic flows. Using a low‐Mach‐number approximation, the pressure is decomposed into a mean thermodynamic contribution and a dynamic fluctuation to deal with the complex role of the pressure in internal aerodynamics. A semi‐implicit time integration and a finite element method with a moving mesh are described to take into account complex geometries and moving boundaries. An Uzawa algorithm accelerated by a preconditioned residual method is introduced to solve the coupled non‐symmetric linear system for the velocity components and the pressure. An efficient conjugate gradient method combined with an incomplete LU preconditioning is used to solve the non‐symmetric linear systems arising from the discretization. The implementation of the numerical scheme on parallel supercomputers is also discussed. Efficient algorithms for the finite element assembly phase and for the solution of linear systems are described which take advantage of the parallel architecture of the new generation of supercomputers. With this technique a global speed‐up of 10 is achieved on a supercomputer with eight processors. To illustrate the capabilities of the numerical method, 2D and 3D simulations of flows in the combustion chamber of a reciprocating engine and around the combustor dome of a gas turbine engine are presented.