The intent of this study is to analyse the influence of nonlinear thermal radiation, thermophoresis, second order slip and magnetic field on the doubly stratified flow of a non-Newtonian micropolar fluid induced by a stretched sheet along with transport of thermal energy and mass species. The radiative heat flux term is modified using the non-linear Rosseland diffusion approximation. The partial differential equations governing the physics of the problem are recast into a set of coupled non-linear ordinary differential equations by using appropriate similarity transformations and later they are solved numerically using RKF-45 algorithm along with shooting technique. Results of the numerical solution are illustrated graphically for several sets of values of the governing parameters. Comparison of our results with the available results in literature for some special cases reveals close agreements. The results indicate that material parameter boosts the velocity and micro-rotation. The temperature ratio parameters that arise due to non-linear thermal radiation are seen to have opposite effect on temperature. It is seen that for strong thermal stratification reverse flow takes place accompanied by an undershoot in temperature. Excessive mass stratification and weaker molecular diffusivity resulted in a significant undershoot of species concentration.