Photoacoustic (PA) technique has important applications for material characterization and nondestructive evaluation of opaque solid materials. PA microscopy allows the acquisition of information of samples with inhomogeneous structures as agricultural seeds. A determining factor for seed safe storage is their moisture content. Seeds stored at high moisture content exhibit increased respiration, heating, and fungal invasion resulting in poor seed vigor and viability. Low moisture content, in the seed to be stored, is the best prevention for these problems. In this study, Photoacoustic Microscopy (PAM) was used to characterize seeds with different moisture content. In the PAM experimental setup the photoacoustic cell and its sensor, an electret microphone, are mounted on an x-y stage of mobile axes, with spatial resolution of 70 μm. The excitation light source is a fiber coupled laser diode, at 650 nm wavelength, modulated in intensity at 1 Hz of frequency, by the reference oscillator of a lock-in amplifier. By using a microscope objective the laser beam was focused on the seed surface. The resolution was enough to obtain differences in the obtained images, which are dependent on the moisture content. This method, to study differences in the seed moisture content, is nondestructive and could be useful for a sustainable Agriculture.