The origin of the Fermi bubbles recently detected by the Fermi Gamma-ray Space Telescope in the inner Galaxy is mysterious. In the companion paper Guo & Mathews (Paper I), we use hydrodynamic simulations to show that they could be produced by a recent powerful AGN jet event. Here we further explore this scenario to study the potential roles of shear viscosity and cosmic ray (CR) diffusion on the morphology and CR distribution of the bubbles. We show that even a relatively low level of viscosity (\mu_{visc} >~ 3 g cm^{-1} s^{-1}, or ~0.1% - 1% of Braginskii viscosity in this context) could effectively suppress the development of Kelvin-Helmholtz instabilities at the bubble surface, resulting in smooth bubble edges as observed. Furthermore, viscosity reduces circulating motions within the bubbles, which would otherwise mix the CR-carrying jet backflow near bubble edges with the bubble interior. Thus viscosity naturally produces an edge-favored CR distribution, an important ingredient to produce the observed flat gamma-ray surface brightness distribution. Generically, such a CR distribution often produces a limb-brightened gamma-ray intensity distribution. However, we show that by incorporating CR diffusion which is strongly suppressed across the bubble surface (as inferred from sharp bubble edges) but is close to canonical values in the bubble interior, we obtain a reasonably flat gamma-ray intensity profile. The similarity of the resulting CR bubble with the observed Fermi bubbles strengthens our previous result in Paper I that the Fermi bubbles were produced by a recent AGN jet event. Studies of the nearby Fermi bubbles may provide a unique opportunity to study the potential roles of plasma viscosity and CR diffusion on the evolution of AGN jets and bubbles.
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