Weed management is a challenge in Identity-Preserved (IP) soybean in Ontario, Canada. Six experiments were established in southwestern Ontario, Canada during 2021 and 2022 to evaluate weed control and soybean yield with preemergence (PRE), early postemergence (EPOST), and PRE followed by (fb) late POST (LPOST) herbicide programs. At 8 weeks after LPOST herbicide applications, S-metolachlor/metribuzin, pyroxasulfone/sulfentrazone, and flumioxazin/metribuzin/imazethapyr applied PRE provided 7, 49, and 99% control of velvetleaf; 65, 98, and 100% control of green pigweed; 7, 8, and 82% control of common ragweed; 25, 68, and 98% control of common lambsquarters; 91, 77, and 89% control of barnyardgrass; and 62, 68, and 93% control of green foxtail, respectively. Imazethapyr + bentazon applied EPOST provided 91% control of velvetleaf; 91% control of green pigweed; 78% control of common ragweed; 95% control of common lambsquarters; 76% control of barnyardgrass; and 79% control of green foxtail. S-metolachlor/metribuzin, pyroxasulfone/sulfentrazone, and flumioxazin/metribuzin/imazethapyr applied PRE fb bentazon + fomesafen + quizalofop applied LPOST provided 61, 86, and 100% control of velvetleaf; 97, 99, and 100% control of green pigweed; 94, 88, and 99% control of common ragweed; 96, 98, and 100% control of common lambsquarters; 97, 95, and 97% control of barnyardgrass; and 97, 96, and 99% control of green foxtail, respectively. There was minimal and transient soybean injury (6% or less) with all PRE or EPOST herbicide treatments, however, S-metolachlor/metribuzin, pyroxasulfone/sulfentrazone, or flumioxazin/metribuzin/imazethapyr applied PRE fb bentazon + fomesafen + quizalofop LPOST caused up to 22% injury in soybean. Weed interference reduced soybean yield 40%. Weed interference with S-metolachlor/metribuzin and pyroxasulfone/sulfentrazone applied PRE reduced soybean yield 25 and 31%, respectively. Reduced weed interference with flumioxazin/metribuzin/imazethapyr applied PRE, imazethapyr + bentazon applied EPOST, and the two-pass programs of a PRE fb LPOST herbicide resulted in soybean yield that was similar to the weed-free control. This study concludes that there are many effective weed management programs in IP soybean; however, the two-pass weed control programs are recommended since they provide good to excellent weed control, minimize soybean yield loss from weed interference, and ensure the use of multiple herbicide modes of action which reduces the selection intensity for the evolution of herbicide-resistant weeds.