Favorable Genetic Correlations Research Articles

Carcass traits of young bulls in dual-purpose cattle: genetic parameters and genetic correlations with veal calf, type and production traits

The profitability of dual-purpose breeding farms can be increased through genetic improvement of carcass traits. To develop a genetic evaluation of carcass traits of young bulls, breed-specific genetic parameters were estimated in three French dual-purpose breeds. Genetic correlations between these traits and veal calf, type and milk production traits were also estimated. Slaughter performances of 156 226 Montbeliarde, 160 361 Normande and 8691 Simmental young bulls were analyzed with a multitrait animal model. In the three breeds, heritabilities were moderate for carcass weight (0.12 to 0.19±0.01 to 0.04) and carcass conformation (0.21 to 0.26±0.01 to 0.04) and slightly lower for age at slaughter (0.08 to 0.17±0.01 to 0.03). For all three breeds, genetic correlations between carcass weight and carcass conformation were moderate and favorable (0.30 to 0.52±0.03 to 0.13). They were strong and favorable (−0.49 to −0.71±0.05 to 0.15) between carcass weight and age at slaughter. Between age at slaughter and carcass conformation, they were low and unfavorable to moderate and favorable (−0.25 to 0.10±0.06 to 0.18). Heavier young bulls tend to be better conformed and slaughtered earlier. Genetic correlations between corresponding young bulls and veal production traits were moderate and favorable (0.32 to 0.70±0.03 to 0.09), implying that selecting sires for veal calf production leads to select sires producing better young bulls. Genetic correlations between young bull carcass weight and cow size were moderately favorable (0.22 to 0.45±0.04 to 0.10). Young bull carcass conformation had moderate and favorable genetic correlations (0.11 to 0.24±0.04 to 0.10) with cow width but moderate and unfavorable genetic correlations (−0.21 to −0.36±0.03 to 0.08) with cow height. Taller cows tended to produce heavier young bulls and thinner cows to produce less conformed ones. Genetic correlations between carcass traits of young bulls and cow muscularity traits were low to moderate and favorable. Finally, genetic correlations between carcass traits of young bulls and milk production traits were low and unfavorable to moderate and favorable. These results indicate the existence for all three breeds of genetic variability for the genetic improvement of carcass traits of young bulls as well as favorable genetic correlations for their simultaneous selection and no strong unfavorable correlation with milk production traits.

Genetic analysis of docility score of Australian Angus and Limousin cattle

The temperament of cattle is believed to affect the profitability of the herd through impacting production costs, meat quality, reproduction, maternal behaviour and the welfare of the animals and their handlers. As part of the national beef cattle genetic evaluation in Australia by BREEDPLAN, 50 935 Angus and 50 930 Limousin calves were scored by seedstock producers for temperament using docility score. Docility score is a subjective score of the animal’s response to being restrained and isolated within a crush, at weaning, and is scored on a scale from 1 to 5 with 1 representing the quiet and 5 the extremely nervous or anxious calves. Genetic parameters for docility score were estimated using a threshold animal model with four thresholds (five categories) from a Bayesian analysis carried out using Gibbs sampling in THRGIBBS1F90 with post-Gibbs analysis in POSTGIBBSF90. The heritability of docility score on the observed scale was 0.21 and 0.39 in Angus and Limousin, respectively. Since the release of the docility breeding value to the Australian Limousin population there has been a favourable trend within the national herd towards more docile cattle. Weak but favourable genetic correlations between docility score and the production traits indicates that docility score is largely independent of these traits and that selection to improve temperament can occur without having an adverse effect on growth, fat, muscle and reproduction.

Parameter estimates for reproductive and carcass traits in Nelore beef cattle

The aim of this study was to estimate genetic parameters for scrotal circumference at 365 (SC365) and 450 (SC450) days of age, age at first calving (AFC), ribeye area (REA), backfat (BF) thickness, and rump fat (RF) thickness, in order to provide information on potential traits for Nelore cattle breeding program. Genetic parameters were estimated using the Average Information Restricted Maximum Likelihood method in single- and multitrait analyses. Four different animal models were tested for SC365, SC450, REA, BF, and RF in single-trait analyses. For SC365 and SC450, the maternal genetic effect was statistically significant (P < 0.01) and was included for multitrait analyses. The direct heritability estimates for SC365, SC450, AFC, REA, BF, and RF were equal to 0.31, 0.38, 0.24, 0.32, 0.16, and 0.19, respectively. Maternal heritability for SC365 and SC450 was equal to 0.06 and 0.08, respectively. The highest genetic correlations were found among the scrotal circumferences. Testing for the inclusion of maternal effects in genetic parameters estimation for scrotal circumference should be evaluated in the Nelore breeding program, mostly for correctly ranking the animal's estimated breeding values. Similar heritability estimates were observed for scrotal circumference, as well as favorable genetic correlations of this trait with AFC and carcass traits. Thus, scrotal circumference measured at 365 days of age could be a target trait for consideration in the Nelore selection index in order to improve most of the traits herein analyzed.

Short communication: Estimates of genetic parameters for dairy fertility in New Zealand.

Reproductive performance of dairy cows in a seasonal calving system is especially important as cows are required to achieve a 365-d calving interval. Prior research with a small data set has identified that the genetic evaluation model for fertility could be enhanced by replacing the binary calving rate trait (CR42), which gives the probability of a cow calving within the first 42d since the planned start of calving at second, third, and fourth calving, with a continuous version, calving season day (CSD), including a heifer calving season day trait expressed at first calving, removing milk yield, retaining a probability of mating trait (PM21) which gives the probability of a cow being mated within the first 21d from the planned start of mating, and first lactation body condition score (BCS), and including gestation length (GL). The aim of this study was to estimate genetic parameters for the proposed new model using a larger data set and compare these with parameters used in the current system. Heritability estimates for CSD and PM21 ranged from 0.013 to 0.019 and from 0.031 to 0.058, respectively. For the 2 traits that correspond with the ones used in the current genetic evaluation system (mating trait, PM21 and BCS) genetic correlations were lower in this study compared with previous estimates. Genetic correlations between CSD and PM21 across different parities were also lower than the correlations between CR42 and PM21 reported previously. The genetic correlation between heifer CSD and CSD in first parity was 0.66. Estimates of genetic correlations of BCS with CSD were higher than those with PM21. For GL, direct heritability was estimated to be 0.67, maternal heritability was 0.11, and maternal repeatability was 0.22. Direct GL had moderate to high and favorable genetic correlations with evaluated fertility traits, whereas corresponding residual correlations remain low, which makes GL a useful candidate predictor trait for fertility in a multiple trait evaluation. The superiority of direct GL genetic component over the maternal GL component for predicting fertility was demonstrated. Future work planned in this area includes the implementation and testing of this new model on national fertility data.

Multi-trait animal model estimation of genetic parameters for morphometric measurements in the Murgese horse breed

The Murgese is a baroque-type horse breed from Southern Italy that is currently experiencing growing interest both at local and international level. The aim of the present work was to investigate the morphological evolution of withers height (WH), chest girth (CG) and cannon bone circumference (CBC) over the last four decades by using linear regression analysis, and to use a multiple-trait animal model with fixed effects (herd, sex, birth year) to estimate genetic parameters for the above traits in the Murgese horse population. A significant increase of WH (only in males), and decrease of CG and CBC over the considered period was observed, though no remarkable trend in genetic gain was observed for the above traits. Hereditability estimates were 0.27 (WH), 0.31 (CG) and 0.24 (CBC). Genetic correlations ranged 0.641 (CG×WH) to 0.709 (CG×CBC). The obtained results suggest that phenotypic selection has not had so far a large impact on the Murgese morphology, whose evolution over the last four decades seems more likely attributable to improvement in management practices. According with the obtained heritability estimates and the favorable genetic correlations, there is ground for the application of quantitative genetic selection for the considered morphometric traits.

Additive and non-additive genetic parameters for multipurpose traits in a clonally replicated incomplete factorial test of Castanea spp.

Second-year traits of growth, stem form, terminal flushing, and survival were assessed in 1770 ramets from 295 clones of 16 full-sib families of Castanea spp. Additive, dominance, and epistatic genetic variances were estimated in a clonally replicated incomplete 5 × 4 factorial test. Parents of the mating design were selected mainly on their phenotypes for wood quality (Castanea sativa traditional varieties) and their proven resistance to Phytophthora spp. (Asiatic species and Castanea crenata × C. sativa hybrids). Additive genetic variances were estimated to be 1.7–9 times greater than the dominance components. Inferred epistatic variance components showed a significant role in controlling growth traits and branch length. Narrow- and broad-sense heritability estimates showed that terminal flushing date was the most heritable trait, followed by height. The high estimates of half-sib, full-sib, and clonal mean heritabilities for almost all traits suggest that different strategies of backwards and forwards selection could be proposed. The ranking of the breeding values of parents allow us to select the best parents for new crosses and extend the mating design. Favorable genetic correlations were found between growth traits and straightness, so multi-trait selection looks promising. Our results provide the first information on the partitioning of genetic variance in Castanea spp. and a starting point for devising new selection strategies.

Genomic selection for tolerance to heat stress in Australian dairy cattle

Temperature and humidity levels above a certain threshold decrease milk production in dairy cattle, and genetic variation is associated with the amount of lost production. To enable selection for improved heat tolerance, the aim of this study was to develop genomic estimated breeding values (GEBV) for heat tolerance in dairy cattle. Heat tolerance was defined as the rate of decline in production under heat stress. We combined herd test-day recording data from 366,835 Holstein and 76,852 Jersey cows with daily temperature and humidity measurements from weather stations closest to the tested herds for test days between 2003 and 2013. We used daily mean values of temperature-humidity index averaged for the day of test and the 4 previous days as the measure of heat stress. Tolerance to heat stress was estimated for each cow using a random regression model with a common threshold of temperature-humidity index=60 for all cows. The slope solutions for cows from this model were used to define the daughter trait deviations of their sires. Genomic best linear unbiased prediction was used to calculate GEBV for heat tolerance for milk, fat, and protein yield. Two reference populations were used, the first consisted of genotyped sires only (2,300 Holstein and 575 Jersey sires), and the other included genotyped sires and cows (2,189 Holstein and 1,188 Jersey cows). The remainder of the genotyped sires were used as a validation set. All animals had genotypes for 632,003 single nucleotide polymorphisms. When using only genotyped sires in the reference set and only the first parity data, the accuracy of GEBV for heat tolerance in relation to changes in milk, fat, and protein yield were 0.48, 0.50, and 0.49 in the Holstein validation sires and 0.44, 0.61, and 0.53 in the Jersey validation sires, respectively. Some slight improvement in the accuracy of prediction was achieved when cows were included in the reference population for Holsteins. No clear improvements in the accuracy of genomic prediction were observed when data from the second and third parities were included. Correlations of GEBV for heat tolerance with Australian Breeding Values for other traits suggested heat tolerance had a favorable genetic correlation with fertility (0.29–0.39 in Holsteins and 0.15–0.27 in Jerseys), but unfavorable correlations for some production traits. Options to improve heat tolerance with genomic selection in Australian dairy cattle are discussed.

Heritability of semen traits in German Warmblood stallions

The objectives of the present study were to evaluate genetic parameters for semen quality traits of 241 fertile German Warmblood stallions regularly employed in artificial insemination (AI). Stallions were owned by the National Studs Celle and Warendorf in Germany. Semen traits analyzed were gel-free volume, sperm concentration, total number of sperm, progressive motility and total number of progressively motile sperm. Semen protocols from a total of 63,972 ejaculates were collected between the years 2001 and 2014 for the present analysis. A multivariate linear animal model was employed for estimation of additive genetic and permanent environmental variances among stallions and breeding values (EBVs) for semen traits. Heritabilities estimated for all German Warmblood stallions were highest for gel-free volume (h2=0.28) and lowest for total number of progressively motile sperm (h2=0.13). The additive genetic correlation among gel-free volume and sperm concentration was highly negative (rg=−0.76). Average reliabilities of EBVs were at 0.37–0.68 for the 241 stallions with own records. The inter-stallion variance explained between 33 and 61% of the trait variance, underlining the major impact of the individual stallion on semen quality traits analyzed here. Recording of semen traits from stallions employed in AI may be recommended because EBVs achieve sufficient accuracies to improve semen quality in future generations. Due to favorable genetic correlations, sperm concentration, total number of sperm and total number of progressively motile sperm may be increased simultaneously.

Estimation of genetic parameters for reproductive traits in alpacas

One of the main deficiencies affecting animal breeding programs in Peruvian alpacas is the low reproductive performance leading to low number of animals available to select from, decreasing strongly the selection intensity. Some reproductive traits could be improved by artificial selection, but very few information about genetic parameters exists for these traits in this specie. The aim of this study was to estimate genetic parameters for six reproductive traits in alpacas both in Suri (SU) and Huacaya (HU) ecotypes, as well as their genetic relationship with fiber and morphological traits. Dataset belonging to Pacomarca experimental farm collected between 2000 and 2014 was used. Number of records for age at first service (AFS), age at first calving (AFC), copulation time (CT), pregnancy diagnosis (PD), gestation length (GL), and calving interval (CI) were, respectively, 1704, 854, 19,770, 5874, 4290 and 934. Pedigree consisted of 7742 animals. Regarding reproductive traits, model of analysis included additive and residual random effects for all traits, and also permanent environmental effect for CT, PD, GL and CI traits, with color and year of recording as fixed effects for all the reproductive traits and also age at mating and sex of calf for GL trait. Estimated heritabilities, respectively for HU and SU were 0.19 and 0.09 for AFS, 0.45 and 0.59 for AFC, 0.04 and 0.05 for CT, 0.07 and 0.05 for PD, 0.12 and 0.20 for GL, and 0.14 and 0.09 for CI. Genetic correlations between them ranged from −0.96 to 0.70. No important genetic correlations were found between reproductive traits and fiber or morphological traits in HU. However, some moderate favorable genetic correlations were found between reproductive and either fiber and morphological traits in SU. According to estimated genetic correlations, some reproductive traits might be included as additional selection criteria in HU.

Genetic growth parameters and morphological traits of canker-resistant cypress clones selected for timber production

Common cypress is widespread throughout the Mediterranean area, where since ancient times, it has been used as a multipurpose tree. In the past, cypress woods were also greatly exploited as a source of strong and durable timber, but nowadays, the availability of cypress timber is extremely limited. The creation of new cypress plantations with properly selected genotypes could sustain a valuable market for high-quality timber. In this study, ten 25 year-old Cupressus sempervirens var. horizontalis canker-resistant clones grown in two plantations located in central Italy were assessed for timber production. The aim of the work was to evaluate the genetic and environmental influences on growth and morphological traits for each clone. Growth traits, branch characteristics (size and insertion angle) and heartwood content offered potential in the selection for timber quality and quantity, while the selection of clones based upon stem form and branch number did not seem easily practicable. Selection for growth should be based on tree height since it results in fewer adverse effects on other properties such as stem form and branching. Insertion angle resulted the most interesting trait, as it showed very high repeatability values and favourable genetic correlations. Heartwood content correlated positively with growth traits, so it may be indirectly favoured in the course of future improvements in clone productivity on the basis of growth. The marked effect exerted by site on all growth traits underlines the importance of identifying suitable locations for cypress plantations.

Genetic association between leg conformation in young pigs and sow reproduction

Lameness is an issue of concern in pig production due both to animal welfare and to economical aspects. Lame sows are believed to suffer from pain and stress which is reported to have a negative influence on reproduction. Leg conformation and locomotion traits in young animals are associated with the risk of lameness at higher age. The purpose of this study was to estimate the genetic parameters of leg conformation traits recorded at performance testing (around 5 months of age) and their genetic correlations with reproduction traits. Information on leg conformation traits from 123,307 pigs scored and on reproduction traits from 22,204 litters in the first and second parity from Swedish Yorkshire nucleus herds were available for genetic analysis. Eight conformation and locomotion traits, coming from the old or the new scoring system in Sweden, included old movement, old overall leg score, new movement, new toes quality, new front leg quality, new rear leg quality, standing-under-position syndrome and new overall score. Four reproduction traits were analyzed by parity: the number of total born piglets, the number of liveborn piglets, the number of stillborn piglets and weaning to service interval. Estimates of heritabilities and genetic correlations between traits were obtained using a multi-trait linear animal mixed model. The heritability estimates were low to moderate, ranging from 0.02 to 0.20 for conformation traits and from 0.06 to 0.10 for reproduction traits. Significant genetic correlations were found between new toes quality and new overall score and the number of liveborn piglets in the 1st parity (−0.35 and −0.31, respectively), indicating that sows with even toes and better overall leg score tend to have higher number of liveborn piglets. Old movement score showed significant correlations with number of total born and number of liveborn piglets in both parities (0.20 to 0.36) and with weaning to service interval in the 2nd parity (−0.35±0.11). Similarly, standing-under-position syndrome was highly associated with number of total born and number of liveborn piglets in both parities (−0.54 to −0.35), indicating that sows with better movement and not suffering from standing-under-position syndrome are likely to have larger litter size and shorter interval to return heat after weaning. Heritabilities and significantly favorable genetic correlation estimates suggest the possibility of simultaneous improvement of both leg quality and reproduction performance by selecting on sound leg conformation and locomotion of young pigs.

Genetic evaluation of maternal behaviour and temperament in Australian sheep

The temperament of ewes and maternal behaviour at lambing has been implicated as contributing factors to lamb survival. Some 14 054 records of maternal behaviour score (MBS, 1 = good, 5 = poor) were collected at lamb tagging from 32 breeds of sheep over several years in a variety of environments. Records for two objectively scored temperament traits, flight time from a weighing crate (FT) and agitation score in an isolation box test (IBT) were available on 19 151 and 17 159 animals, respectively. These data were pooled from three sources, which included research and commercial ram breeding flocks. The combined data were also split into three subsets based on breed groups (Merino, Maternal and Terminal) for analyses. Records of weights and number of lambs weaned (NLW), as well as pedigree information was available from the national genetic evaluation database. The heritability estimates from the combined analyses were 0.20 ± 0.02 for MBS, 0.18 ± 0.02 for FT and 0.26 ± 0.02 for IBT, with a repeatability of 0.24 ± 0.01 for MBS. There were some small differences between the breed groups in the heritability estimates. The genetic correlations between FT and MBS were negative (favourable) and consistent across the datasets (–0.47 ± 0.12, combined analysis). The genetic correlations between IBT and MBS were positive (favourable) but not significant (0.12 ± 0.11, combined analysis). The genetic correlations between IBT and FT were also favourable, but small and generally not significant. There were small favourable genetic correlations between MBS and various bodyweights (–0.17 ± 0.07, yearling) and NLW (–0.25 ± 0.07). However, there were no significant genetic relationships between the temperament and production traits. The moderate heritability and repeatability of MBS indicate maternal behaviour could be improved by selection, and that it could be a useful additional trait in breeding programs for improved reproduction.

Selection for Duration of Fertility and Mule Duck White Plumage Colour in a Synthetic Strain of Ducks (Anas platyrhynchos).

A synthetic strain of ducks (Anas platyrhynchos) was developed by introducing genes for long duration of fertility to be used as mother of mule ducklings and a seven-generation selection experiment was conducted to increase the number of fertile eggs after a single artificial insemination (AI) with pooled Muscovy semen. Reciprocal crossbreeding between Brown Tsaiya LRI-2 (with long duration of fertility) and Pekin L-201 (with white plumage mule ducklings) ducks produced the G0. Then G1 were intercrossed to produce G2 and so on for the following generations. Each female duck was inseminated 3 times, at 26, 29, and 32 weeks of age. The eggs were collected for 14 days from day 2 after AI. Individual data regarding the number of incubated eggs (Ie), the number of fertile eggs at candling at day 7 of incubation (F), the total number of dead embryos (M), the maximum duration of fertility (Dm) and the number of hatched mule ducklings (H) with plumage colour were recorded. The selection criterion was the breeding values of the best linear unbiased prediction animal model for F. The results show high percentage of exhibited heterosis in G2 for traits to improve (19.1% for F and 12.9% for H); F with a value of 5.92 (vs 3.74 in the Pekin L-201) was improved in the G2. Heritabilities were found to be low for Ie (h2 = 0.07±0.03) and M (h2 = 0.07±0.01), moderately low for Dm (h2 = 0.13±0.02), of medium values for H (h2 = 0.20±0.03) and F (h2 = 0.23±0.03). High and favourable genetic correlations existed between F and Dm (rg = 0.93), between F and H (rg = 0.97) and between Dm and H (rg = 0.90). The selection experiment showed a positive trend for phenotypic values of F (6.38 fertile eggs in G10 of synthetic strain vs 5.59 eggs in G4, and 3.74 eggs in Pekin L-201), with correlated response for increasing H (5.73 ducklings in G10 vs 4.86 in G4, and 3.09 ducklings in Pekin L-201) and maximum duration of the fertile period without increasing the embryo mortality rate. The average predicted genetic response for F was 40% of genetic standard deviation per generation of selection. The mule ducklings’ feather colour also was improved. It was concluded that this study provided results for a better understanding of the genetics of the duration of fertility traits in the common female duck bred for mule and that the selection of a synthetic strain was effective method of improvement.

Pannon breeding program in rabbit at Kaposvár University

In this study, the rabbit breeding programme conducted at the Kaposvar University is extensively discussed. Population history and recorded traits, creation of the different synthetic lines, evolution of their selection criteria, stimation of the genetic parameters and genetic trends are the main elements described. The programme (Pannon rabbit breeding programme) is operated with 1 maternal line and 2 paternal lines. At present the maternal line (Pannon Ka) is selected for number of kits born alive, while the 2 paternal lines are pre-selected for litter weight (Pannon White) and average daily gain (Pannon terminal line), respectively, then they are both selected for thigh muscle volume (based on computer tomography (CT) measurements). All these traits are evaluated by BLUP methodology. According to the genetic parameter estimations, the heritability of the reproductive traits (litter size and litter weight) was low (0.05-0.17 and 0.08-0.17). When the litter size component traits were extended with dominance effects, the magnitude of the dominance components varied between 0.05 and 0.08. Average daily gain and thigh muscle volume were moderately heritable (0.21-0.27 and 0.19-0.25), while heritability estimates of the carcass traits (dressing out percentage and hind part ratio) were high (0.47 and 0.59). Computer tomography based traits showed favourable high genetic correlations with the carcass traits (dressing out percentage: 0.45-0.47 and hind part ratio: 0.59). On the contrary, strong negative correlation was estimated between thigh muscle volume and litter weight (–0.37 and –0.70). The selection responses obtained for all analysed traits were within the range published by the relevant literature. The success of the CT-based selection for improving meat production was justified by different methods (crossing experiment, divergent selection, estimated genetic trends). In addition to the slow increase in the inbreeding level of the Pannon White breed, it also proves the effectiveness of the circular mating scheme used in all three rabbit breeds in the programme.

Genetic associations between temperament and performance traits in Nellore beef cattle.

The aim of this study was to estimate genetic associations between temperament and performance traits. Temperament was evaluated in yearling male and female Nellore cattle, using four traits: temperament score (TS), for assessing animals' reactions in a corral pen (n = 25,691); movement score (MOV), for animals' movements recorded inside the crush; crush score (CS), for animal's general reactivity inside the crush; and flight speed (FS), for the speed (in m/s) at which the animals exited the crush (n = 11,697, for the last three methods); for all the temperament traits, lower scores indicate animals with calmer temperament. Performance traits were visual scores for conformation (C), finishing precocity (P) and muscling (M) evaluated at yearlings, and average daily gain (ADG) was estimated from weaning to yearling. Bayesian inference using Gibbs sampling was applied to estimate (co)variance components and genetic and phenotypic parameters. Heritability estimates for the temperament traits ranged from 0.07 (CS) to 0.28 (FS). Genetic correlations of the temperament traits with ADG and C, P and M were negative and ranged from -0.02 to -0.31. Phenotypic correlations were negative and consistently lower than the genetic, ranging from -0.08 to -0.02. It was concluded that the temperament traits assessed had favourable genetic correlation estimates with the performance traits studied. However, indirect responses in temperament when selecting for higher ADG and visual scoring system of C, P and M, will be low.

Estimation of residual energy intake and its genetic background during the growing period in pigs

The aims of this study were to (i) compare models estimating residual energy intake (REI) using either lean and fat tissue growth or their proxy traits (average daily gain (ADG) and backfat thickness (BF)); (ii) determine genetic characteristics of REI at different growth stages and the entire test period; and (iii) examine 9 genetic and phenotypic relationships of REI with other production traits. Data from 315 pigs of an F2 generation were used which originated from crossing Pietrain sires with a commercial crossbred dam population. Average daily protein (APD) and lipid deposition (ALD), as measurements of lean and fat tissue growth, were obtained using the deuterium dilution technique on live animals. During growth from 60 to 140kg, REI was estimated using 4 different models for energy intake that included, besides other systematic effects, (1) ADG and BF; (2) APD and ALD; (3) and (4) incorporated the same covariables as the first two models, respectively, but pre-adjusted for systematic effects. Genetic parameters and estimated breeding values were obtained based on univariate animal models using REML analysis. Over the entire growing period, heritabilities of different REI using different models were all estimated at 0.44 and their genetic correlations were at unity. At different growth stages heritabilities for REI were greater ranging from 0.47 to 0.50. Genetic correlations between REI estimates at different stages of growth, obtained using genetic model 4, indicated that REI at 60 to 90kg was non-significantly (P>0.05) associated with REI at 90–120kg (0.32±0.29) and 120–140kg (0.28±0.28), but REI of the latter growth stages showed a significant (P<0.05) moderate genetic correlation (0.58±0.21). REI had favourable genetic correlations with feed conversion ratio (FCR, 0.84±0.13) and total nitrogen excretion (TNE, 0.85±0.11). The results indicate that REI estimated based on models using proxy traits for lean and fat tissue deposition resulted in slightly lower accuracies compared to models fitting APD and ALD, which explained a greater variation of energy intake. There is great potential for improvement of REI due to its large heritability. Genetic selection for REI should consider the stages of growth, because of their differences in genetic background. REI explained a large portion of variance in FCR and TNE, therefore selection for REI is expected to result in, besides improvement of feed efficiency, a substantial reduction in the environmental pollution of pig production.

Genetics of wood quality attributes in Western Larch

Wood quality traits are important to balance the negative decline of wood quality associated with selection for growth attributes in gymnosperm breeding programs. Obtaining wood quality estimates quickly is crucial for successful incorporation in breeding programs. The aims of this paper are to: (1) Estimate genetic and phenotypic correlations between growth and wood quality attributes, (2) Estimate heritability of the studied traits, and (3) Assess the accuracy of in situ non-destructive tools as a representative of actual wood density. Wood density (X-ray densitometry), tree height, diameter, volume, resistance drilling, acoustic velocity, and dynamic modulus of elasticity were estimated, along with their genetic parameters, for 1,200, 20-year-old trees from 25 open-pollinated families. Individual tree level heritabilities for non-destructive evaluation attributes were moderate ( $$ {\widehat{h}}_i^2=0.37-0.42 $$ ), wood density and growth traits were lower ( $$ {\widehat{h}}_i^2=0.23-0.35 $$ ). Favorable genetic and phenotypic correlations between growth traits, wood density, and non-destructive evaluation traits were observed. A perfect genetic correlation was found between resistance drilling and wood density (rG = 1.00 ± 0.07), while acoustic velocity and dynamic modulus of elasticity showed weaker genetic correlations with wood density (rG = 0.25 ± 0.24; 0.46 ± 0.21, respectively). This study confirmed that resistance drilling is a reliable predictor of wood density in western larch, while the weak genetic correlations displayed by acoustic velocity and dynamic modulus of elasticity suggest limited dependability for their use as fast in situ wood density assessment methods in this species.

Acoustic Wave Velocity as a Selection Trait in Eucalyptus nitens

Previous studies in Eucalyptus nitens have revealed favourable genetic correlations exist between acoustic wave velocity (AWV) in standing trees and modulus of elasticity (MOE), which can determine the suitability of trees for structural timber and/or engineered wood products. This study investigates the strength and stability of genetic variation in standing tree AWV across a range of environments in Tasmania, where there are a number of large plantation estates and breeding trials. Trees under study were from open-pollinated progeny trials established in 1993. Across sites, for standing tree AWV the ranking of E. nitens races did not change and within-race additive genetic correlations were strong (0.61 to 0.99). Heritabilities (0.16 to 0.74) and coefficients of additive genetic variation (2.6 to 4.8) were moderate for this trait. Correlations between standing tree AWV and both basic density and diameter at breast height (DBH) were favourable. Results indicate that there is potential to improve MOE in E. nitens through the exploitation of genetic variation in AWV among and within races, the expression of genetic variation in AWV is relatively stable across different growing environments, and past selection for basic density and growth in pulpwood breeding programs is unlikely to have adversely affected MOE.

Efficiency of different selection strategies against boar taint in pigs

The breeding scheme of a Swiss sire line was modeled to compare different target traits and information sources for selection against boar taint. The impact of selection against boar taint on production traits was assessed for different economic weights of boar taint compounds. Genetic gain and breeding costs were evaluated using ZPlan+, a software based on selection index theory, gene flow method and economic modeling. Scenario I reflected the currently practiced breeding strategy as a reference scenario without selection against boar taint. Scenario II incorporated selection against the chemical compounds of boar taint, androstenone (AND), skatole (SKA) and indole (IND) with economic weights of −2.74, −1.69 and −0.99 Euro per unit of the log transformed trait, respectively. As information sources, biopsy-based performance testing of live boars (BPT) was compared with genomic selection (GS) and a combination of both. Scenario III included selection against the subjectively assessed human nose score (HNS) of boar taint. Information sources were either station testing of full and half sibs of the selection candidate or GS against HNS of boar taint compounds. In scenario I, annual genetic gain of log-transformed AND (SKA; IND) was 0.06 (0.09; 0.02) Euro, which was because of favorable genetic correlations with lean meat percentage and meat surface. In scenario II, genetic gain increased to 0.28 (0.20; 0.09) Euro per year when conducting BPT. Compared with BPT, genetic gain was smaller with GS. A combination of BPT and GS only marginally increased annual genetic gain, whereas variable costs per selection candidate augmented from 230 Euro (BPT) to 330 Euro (GS) or 380 Euro (both). The potential of GS was found to be higher when selecting against HNS, which has a low heritability. Annual genetic gain from GS was higher than from station testing of 4 full sibs and 76 half sibs with one or two measurements. The most effective strategy to reduce HNS was selecting against chemical compounds by conducting BPT. Because of heritabilities higher than 0.45 for AND, SKA and IND and high genetic correlations to HNS, the (correlated) response in units of the trait could be increased by 62% compared with scenario III with GS and even by 79% compared with scenario III, with station testing of siblings with two measurements. Increasing the economic weights of boar taint compounds amplified negative effects on average daily gain, drip loss and intramuscular fat percentage.

Genetic parameters for growth and faecal worm egg count following Haemonchus contortus experimental infestations using pedigree and molecular information

BackgroundHaemonchosis is a parasitic disease that causes severe economic losses in sheep industry. In recent years, the increasing resistance of the parasite to anthelmintics has raised the need for alternative control strategies. Genetic selection is a promising alternative but its efficacy depends on the availability of genetic variation and on the occurrence of favourable genetic correlations between the traits included in the breeding goal. The objective of this study was twofold. First, to estimate both the heritability of and the genetic correlations between growth traits and parasite resistance traits, using bivariate linear mixed animal models, from the phenotypes and genotypes of 1004 backcross lambs (considered as a single population), which underwent two subsequent experimental infestations protocols with Haemonchus contortus. Second, to compare the precision of the estimates when using two different relationship matrices: including pedigree information only or including also SNP (single nucleotide polymorphism) information.ResultsHeritabilities were low for average daily gain before infestation (0.10 to 0.15) and average daily gain during the first infestation (0.11 to 0.16), moderate for faecal egg counts during the first infestation (0.21 to 0.38) and faecal egg counts during the second infestation (0.48 to 0.55). Genetic correlations between both growth traits and faecal egg count during the naïve infestation were equal to zero but the genetic correlation between faecal egg count during the second infestation and growth was positive in a Haemonchus contortus free environment and negative in a contaminated environment. The standard errors of the estimates obtained by including SNP information were smaller than those obtained by including pedigree information only.ConclusionsThe genetic parameters estimates suggest that growth performance can be selected for independently of selection on resistance to naïve infestation. Selection for increased growth in a non-contaminated environment could lead to more susceptible animals with long-term exposure to the infestation but it could be possible to select for increased growth in a contaminated environment while also increasing resistance to the long-term exposure to the parasite. The use of molecular information increases the precision of the estimates.