Argentine tardigrades are relatively unknown and, in many cases, unstudied; in the province of Salta in north-western Argentina the lone record of tardigrade dates to the 1980s. Here, we evaluate and compare tardigrade diversity in natural habitats (N), urban environments (U) and rural communities (R) of Yungas. This work seeks to verify the existence of a reduction in tardigrade diversity outside their native habitats and if there is a biotic homogenization in the urban communities. Tardigrade community assemblages were compared between habitats using non-metric multidimensional scaling and a multi-response permutation procedure. Beta diversity was analysed in its component parts, species turnover and nesting, using a modified Raup–Crick test. Gamma diversity was divided into alpha and several beta levels. In total, 2080 eutardigrade and heterotardigrade specimens were registered and showed differences in tardigrade assemblages between habitats; the most diverse habitat was R. The beta diversity partition showed a nesting pattern in the U communities, highlighting faunal homogenization, while species turnover was key in the R and N communities. There was species loss from N to U communities, most markedly between R and U; various forces (both stochastic and deterministic) influence the structure of these communities.