Abstract Connectivity is an important parameter to measure fault-tolerance of networks. As a generalization, structure connectivity and substructure connectivity of networks were proposed. For connected graphs $G$ and $H$, the $H$-structure connectivity $\kappa (G; H)$ (resp. $H$-substructure connectivity $\kappa ^{s}(G; H)$) of $G$ is the minimum cardinality of a set of subgraphs $\mathcal{F}$ of $G$ that each is isomorphic to $H$ (resp. a connected subgraph of $H$) such that $G-\mathcal{F}$ is disconnected or the singleton. $n$-dimensional folded cross cube, $FCQ_{n}$, is a network obtained by adding edges to $n$-dimensional cross cubes. In this paper, we study star, path, and cycle structure connectivity and substructure connectivity of $FCQ_{n}$, where $n\geq 8$. For star ($K_{1,m}$) structure, we get that $\kappa (FCQ_{n}; K_{1, m})=\kappa ^{s}(FCQ_{n}; K_{1, m})=\lceil \frac{n + 1}{2} \rceil $ for $2 \leq m \leq \frac{n}{2}$. For path ($P_{k}$) structure, we show that for $3\leq k\leq n+1$, if $k$ is odd, then $\kappa (FCQ_{n}; P_{k})=\kappa ^{s}(FCQ_{n}; P_{k})=\lceil \frac{2(n + 1)}{k+1}\rceil $; if $k$ is even, then $\kappa (FCQ_{n}; P_{k})=\kappa ^{s}(FCQ_{n}; P_{k})=\lceil \frac{2(n + 1)} {k}\rceil $. For cycle ($C_{k}$) structure, we prove that $\kappa ^(FCQ_{n}; C_{k})=\kappa ^{s}(FCQ_{n}; P_{k})$. Further, we calculate $\kappa ^(FCQ_{n}; C_{2k-1})=\lceil \frac{n+1}{k-1} \rceil $ for $4 \leq k \leq n+2$ and $C_{2k}$-structure connectivity of $FCQ_{n}$ is $\lfloor \frac{n+1}{k} \rfloor +1$ for $6 \leq k\leq n + 1$ and even $k$.
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