The Maghlaq Fault is a large, left-stepping normal fault (displacement >210 m) cutting the Oligo-Miocene pre- to syn-rift carbonates of SW Malta. Two principal slip zones separate the deformed rocks of the fault zone from the undeformed wall rocks. Fault rocks derived from fully lithified, pre- to early syn-rift sediments comprise relatively continuous fine-grained veneers of cataclasite and localised fault-bound lenses of wall rock, occurring over a range of scales, which are commonly brecciated. The lenses result from the linkage of slip surfaces, the inclusion of asperities and the formation of Riedel shears within the fault zone. In contrast, fault rock incorporated from unlithified syn-rift sediments comprise relatively continuous veils of rock that deformed in a ductile manner. Anomalously thick parts of the fault zone with highly complex structure and content are associated with breached relay zones, branch-lines and bends; these structures represent progressive stages of fault segment linkage. The progressive evolution and bypassing of fault zone complexities to form a smoother and more continuous active fault surface, results in complex fault rock distributions within the fault zone. Segment linkage structures have high fracture densities which combined with their significant vertical extents suggest they are potentially important up-fault fluid flow conduits.