Free fatty acid receptors (FFARs) are a member of G protein‐coupled receptor (GPCR) family. Among the FFARs, GPR120 and GPR40 whose endogenous ligands are medium‐ and long‐chain fatty acids are thought to play important physiological roles in insulin release. Although they have received increasing attention as attractive drug targets for diabetes, much still remain unclear about their pharmacology and few specific ligand has been reported so far. To develop specific agonists for these receptors, a series of compounds derived from a peroxisome proliferators‐activated receptor γ agonist were synthesized, and their structure‐activity relationships as agonists for these receptors were explored by using homology models of GPR40 and GPR120. We calculated the hydrogen bonding energies between the compounds and these models. The energies correlated well with the agonistic activity of the compounds that were examined as the ERK activity in either cloned GPR120 or GPR40 systems. Furthermore, the compounds with the lowest hydrogen bonding energies for each receptor potently activated glucagon‐like peptide‐1 (GLP‐1) secretion from STC‐1 cells and insulin secretion from MIN6 cells, the cells that endogenously express GPR120 and GPR40, respectively. Taken together, our results showed that a docking simulation using GPR120 and GPR40 homology models might be useful to predict the agonistic activity of compounds.
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