Levels and distributions of organochlorine pesticides (OCPs) and phenolic endocrine-disrupting chemicals (EDCs) in surficial sediments of the Shaying River, the largest tributary of the Huaihe River in eastern China, were investigated to understand their relationship with the hydrodynamics. Concentrations of total hexachlorocyclohexane isomers (ΣHCHs) and dichlorodiphenyltrichloroethanes (ΣDDT) were in the range of 26.7–119 and 9.64–214 ng g−1 with mean values of 104 and 80.7 ng g−1, respectively. Residues of HCHs in sediments can be considered as originating from the application of both technical mixtures and lindane in the past. According to the spatial distribution of (DDD + DDE)/ΣDDT ratios, the influence of recent DDT inputs was dominant upstream, whereas DDD prevailed downstream, due to anaerobic degradation. Concentrations of total phenolic EDCs (ΣEDCs) including nonylphenol (NP), octylphenol (OP) and bisphenol A (BPA) ranged widely from 425 to 3,953 ng g−1 with the highest level occurring in the middle reach. This accumulation could be attributed to the retransfer of surficial sediment from upstream, where the main sources are located. Spatial distribution of contaminants indicated that riverine hydrodynamics can significantly affect their behavior and fate in sediment. This evidence was further verified by multivariate statistical techniques such as Cluster Analysis (CA), Principle Component Analysis (PCA) and Discriminant Analysis (DA). The CA identified three distinct clusters reflecting the large complexity of river system like geography setting, hydrodynamic condition, etc. This finding was also confirmed by the DA. Furthermore, a PCA demonstrated that about 80.8 % of total spatial variance can be explained by the first three factors, which also indicated that contaminant spatial distributions are driven by local inputs, biodegradation and riverine hydrodynamics.