Fast Repetition Rate Research Articles

Taxonomic Variability in the Electron Requirement for Carbon Fixation Across Marine Phytoplankton.

Fast Repetition Rate fluorometry (FRRf) has been increasingly used to measure marine primary productivity by oceanographers to understand how carbon (C) uptake patterns vary over space and time in the global ocean. As FRRf measures electron transport rates through photosystem II (ETRPSII ), a critical, but difficult to predict conversion factor termed the "electron requirement for carbon fixation" (Φe,C ) is needed to scale ETRPSII to C-fixation rates. Recent studies have generally focused on understanding environmental regulation of Φe,C , while taxonomic control has been explored by only a handful of laboratory studies encompassing a limited diversity of phytoplankton species. We therefore assessed Φe,C for a wide range of marine phytoplankton (n=17 strains) spanning multiple taxonomic and size classes. Data mined from previous studies were further considered to determine whether Φe,C variability could be explained by taxonomy versus other phenotypic traits influencing growth and physiological performance (e.g., cell size). We found that Φe,C exhibited considerable variability (~4-10mole- ·[molC]-1 ) and was negatively correlated with growth rate (R2 =0.7, P<0.01). Diatoms exhibited a lower Φe,C compared to chlorophytes during steady-state, nutrient-replete growth. Inclusion of meta-analysis data did not find significant relationships between Φe,C and class, or growth rate, although confounding factors inherent to methodological inconsistencies between studies likely contributed to this. Knowledge of empirical relationships between Φe,C and growth rate coupled with recent improvements in quantifying phytoplankton growth rates insitu, facilitate up-scaling of FRRf campaigns to routinely derive Φe,C needed to assess ocean C-cycling.

Variability in primary productivity and bio-optical properties in the Indian sector of the Southern Ocean during an austral summer

The Southern Ocean (SO), in spite of its major contribution to global primary productivity (PP), remains underexplored in this aspect. Light being the most limiting parameter affecting primary production, it is crucial to study the ambient light field to understand PP and associated processes. The current study makes a dual effort to present PP estimates as well as understand the bio-optical variability in the Indian sector of the Southern Ocean (ISSO). Results suggest that PP was highest at Sub-Tropical Front (STF) and lowest at Polar Front-2 (PF2). Most PP profiles were characterized by subsurface maxima, indicating probable photoinhibition or micronutrient limitation at surface layer. Strong correlation between measured and satellite-based integrated PP (R2 = 0.94, RMSE = 77.48, p < 0.01) indicated the efficacy of global models in their original formulation in bio-optically complex SO waters. The maximum photochemical efficiency of phytoplankton (Fv/Fm) measured by fast repetition rate fluorometry varied from 0.1–0.4, implying reduced phytoplankton photosynthetic efficiency in ISSO. The ratio between remote sensing reflectance (Rrs)-derived phytoplankton absorption (aph) at blue-red band (B/R ratio) indicated dominance of smaller phytoplankton in surface and larger phytoplankton at subsurface. Higher Chl-a specific phytoplankton absorption (aph* ) than phytoplankton absorption (aph) suggested an adaptation of dominant phytoplankton species to low light, yet a better light harvest efficiency. However, low contribution of aph suggested a strong influence of non-phytoplankton materials to the total absorption budget. We therefore infer that, the surrounding physical environment in terms of nutrients and bio-optical variability modulated phytoplankton size class and thereby productivity more critically in the surface than in the deeper layers of ISSO.

High-energy laser pulses for extended duration megahertz-rate flow diagnostics.

Optical diagnostics of highly dynamic supersonic and hypersonic flows requires laser sources with a combination of high pulse intensities and fast repetition rates. A burst-mode Nd:YAG laser system is presented for increasing the overall energy of 532 nm pulse trains by ∼100× and the number of high-energy pulses by 30× for extended duration megahertz-rate flow diagnostics. At a lower repetition rate of 100 kHz, unprecedented energies near 1 J/pulse are achieved at 532 nm over a 1.1 ms burst. The laser performance is characterized and demonstrated for megahertz-rate laser-induced breakdown spectroscopy in a Mach 2 turbulent jet.

A Polarity-Adjustable Nanosecond Pulse Generator Suitable for High Impedance Load

This article presents a new method for forming nanosecond short pulse on high impedance load using the turnon and turn-off delays of dual Marx. The generator combines advantages of the traditional solid-state Marx generator's modular stacking design to easily stack high-voltage pulse, flexible pulsewidth, and compact size. It can output unipolar or bipolar pulses by controlling the driving signal of each Marx. And the delay time between bipolar pulses can be flexibly adjusted. The dual Marx of the pulse generator is designed by the same seven-stage module stack. The SiC-MOSFET with fast turn-off capability and high repetition rate is used as the main switch, which has superior performance under high-frequency conditions. Through theoretical analysis and prototype test, the generator can generate voltage amplitude ±5 kV under 2-kΩ noninductive resistance load, pulsewidth 10-30 ns continuously adjustable, and the delay time of positive and negative nanosecond pulses is 100-400 ns. This high-voltage nanosecond pulse generator has a repetition frequency of up to 1 MHz in the burst.

Towards implementation of a magic optical-dipole trap for confining ground-state and Rydberg-state cesium cold atoms

Long ground-Rydberg coherence lifetime is interesting for implementing high-fidelity quantum logic gates, many-body physics, and other quantum information protocols. However, the potential formed by a conventional far-off-resonance red-detuned optical-dipole trap (ODT) is usually repulsive for Rydberg atoms, which will result in fast atom loss and low repetition rate of the experimental sequence. These issues can be addressed by a magic ODT. We performed the calculation of ODT’s magic detuning for confinement of ground-state and Rydberg-state cesium atoms with the same potential well. We used a sum-over-states method to calculate the dynamic polarizabilities of 6S1/2 ground state and highly-excited (nS1/2 and nP3/2) Rydberg state of cesium atoms, and identify corresponding magic detuning for optical wavelengths in the range of 850–1950 nm. We estimated the trapping lifetime of cesium Rydberg atoms confined in the magic ODT by including different dissipative mechanisms. Furthermore, we have experimentally realized an 1879.43 nm single-frequency laser system with a watt-level output power for setting up the magic ODT for 6S1/2 ground-state and 84P3/2 Rydberg-state cesium cold atoms.

Lagrangian Studies of Marine Production: A Multimethod Assessment of Productivity Relationships in the California Current Ecosystem Upwelling Region

AbstractA multimethod process‐oriented investigation of diverse productivity measures in the California Current Ecosystem (CCE) Long‐Term Ecological Research study region, a complex physical environment, is presented. Seven multiday deployments covering a transition region from high to low productivity were conducted over two field expeditions (spring 2016 and summer 2017). Employing a Lagrangian study design, water parcels were followed over several days, comparing 24‐h in situ measurements (14C and 15NO3 ‐uptake, dilution estimates of phytoplankton growth, and microzooplankton grazing) with high‐resolution productivity measurements by fast repetition rate fluorometry (FRRF) and equilibrium inlet mass spectrometry (EIMS), and integrated carbon export measuremnts using sediment traps. Results show the importance of accounting for temporal and fine spatial scale variability when estimating ecosystem production. FRRF and EIMS measurements resolved diel patterns in gross primary and net community production. Diel productivity changes agreed well with comparably more traditional measurements. While differences in productivity metrics calculated over different time intervals were considerable, as those methods rely on different base assumptions, the data can be used to explain ecosystem processes which would otherwise have gone unnoticed. The processes resolved from this method comparison further understanding of temporal and spatial coupling and decoupling of surface productivity and potential carbon burial in a gradient from coastal to offshore ecosystems.

Optimizing Auditory Brainstem Response Acquisition Using Interleaved Frequencies.

Auditory brainstem responses (ABRs) require averaging responses to hundreds or thousands of repetitions of a stimulus (e.g., tone pip) to obtain a measurable evoked response at the scalp. Fast repetition rates lead to changes in ABR amplitude and latency due to adaptation. To minimize the effect of adaptation, stimulus rates are sometimes as low as 10 to 13.3 stimuli per second, requiring long acquisition times. The trade-off between reducing acquisition time and minimizing the effect of adaptation on ABRs is an especially important consideration for studies of cochlear synaptopathy, which use the amplitude of short latency responses (wave 1) to assess auditory nerve survival. It has been proposed that adaptation during ABR acquisition can be reduced by interleaving tones at different frequencies, rather than testing each frequency serially. With careful ordering of frequencies and levels in the stimulus train, adaptation in the auditory nerve can be minimized, thereby permitting an increase in the rate at which tone bursts are presented. However, widespread adoption of this stimulus design has been hindered by lack of available software. Here, we develop and validate an interleaved stimulus design to optimize the rate of ABR measurement while minimizing adaptation. We implement this method in an open-source data acquisition software tool that permits either serial or interleaved ABR measurements. The open-source software library, psiexperiment, is compatible with widely used ABR hardware. Consistent with previous studies, careful design of an interleaved stimulus train can reduce ABR acquisition time by more than half, with minimal effect on ABR thresholds and wave 1 latency, while improving measures of wave 1 amplitude.

Realtime kinetics of the light driven steps of photosynthetic water oxidation in living organisms by “stroboscopic” fluorometry

We develop a rapid “stroboscopic” fluorescence induction method, using the fast repetition rate fluorometry (FRRF) technique, to measure changes in the quantum yield of light emission from chlorophyll in oxygenic photosynthesis arising from competition with primary photochemical charge separation (P680* ➔ P680+QA−). This method determines the transit times of electrons that pass through PSII during the successive steps in the catalytic cycle of water oxidation/O2 formation (S states) and plastoquinone reduction in any oxygenic phototroph (in vivo or in vitro). We report the first measurements from intact living cells, illustrated by a eukaryotic alga (Nannochloropsis oceanica). We demonstrate that S state transition times depend strongly on the redox state of the PSII acceptor side, at both QB and the plastoquinone pool which serve as the major locus of regulation of PSII electron flux. We provide evidence for a kinetic intermediate S3′ state (lifetime 220 μs) following formation of S3 and prior to the release of O2. We compare the FRRF-detected kinetics to other previous spectroscopic methods (optical absorbance, EPR, and XES) that are applicable only to in vitro samples.

Diel quenching of Southern Ocean phytoplankton fluorescence is related to iron limitation

Abstract. Evaluation of photosynthetic competency in time and space is critical for better estimates and models of oceanic primary productivity. This is especially true for areas where the lack of iron (Fe) limits phytoplankton productivity, such as the Southern Ocean. Assessment of photosynthetic competency on large scales remains challenging, but phytoplankton chlorophyll a fluorescence (ChlF) is a signal that holds promise in this respect as it is affected by, and consequently provides information about, the photosynthetic efficiency of the organism. A second process affecting the ChlF signal is heat dissipation of absorbed light energy, referred to as non-photochemical quenching (NPQ). NPQ is triggered when excess energy is absorbed, i.e. when more light is absorbed than can be used directly for photosynthetic carbon fixation. The effect of NPQ on the ChlF signal complicates its interpretation in terms of photosynthetic efficiency, and therefore most approaches relating ChlF parameters to photosynthetic efficiency seek to minimize the influence of NPQ by working under conditions of sub-saturating irradiance. Here, we propose that NPQ itself holds potential as an easily acquired optical signal indicative of phytoplankton physiological state with respect to Fe limitation. We present data from a research voyage to the Subantarctic Zone south of Australia. Incubation experiments confirmed that resident phytoplankton were Fe-limited, as the maximum quantum yield of primary photochemistry, Fv∕Fm, measured with a fast repetition rate fluorometer (FRRf), increased significantly with Fe addition. The NPQ “capacity” of the phytoplankton also showed sensitivity to Fe addition, decreasing with increased Fe availability, confirming previous work. The fortuitous presence of a remnant warm-core eddy in the vicinity of the study area allowed comparison of fluorescence behaviour between two distinct water masses, with the colder water showing significantly lower Fv∕Fm than the warmer eddy waters, suggesting a difference in Fe limitation status between the two water masses. Again, NPQ capacity measured with the FRRf mirrored the behaviour observed in Fv∕Fm, decreasing as Fv∕Fm increased in the warmer water mass. We also analysed the diel quenching of underway fluorescence measured with a standard fluorometer, such as is frequently used to monitor ambient chlorophyll a concentrations, and found a significant difference in behaviour between the two water masses. This difference was quantified by defining an NPQ parameter akin to the Stern–Volmer parameterization of NPQ, exploiting the fluorescence quenching induced by diel fluctuations in incident irradiance. We propose that monitoring of this novel NPQ parameter may enable assessment of phytoplankton physiological status (related to Fe availability) based on measurements made with standard fluorometers, as ubiquitously used on moorings, ships, floats and gliders.

Global Trends of Usage of Chlorophyll Fluorescence and Projections for the Next Decade.

Chlorophyll fluorescence is the most widely used set of techniques to probe photosynthesis and plant stress. Its great versatility has given rise to different routine methods to study plants and algae. The three main technical platforms are pulse amplitude modulation (PAM), fast rise of chlorophyll fluorescence, and fast repetition rate. Solar-induced fluorescence (SIF) has also gained interest in the last few years. Works have compared their advantages and their underlying theory, with many arguments advanced as to which method is the most accurate and useful. To date, no data has assessed the exact magnitude of popularity and influence for each methodology. In this work, we have taken the bibliometrics of the past decade for each of the four platforms, have evaluated the public scientific opinion toward each method, and possibly identified a geographical bias. We used various metrics to assess influence and popularity for the four routine platforms compared in this study and found that, overall, PAM currently has the highest values, although the more recent SIF has increased in popularity rapidly during the last decade. This indicates that PAM is currently one of the fundamental tools in chlorophyll fluorescence.

Adverse effects of atrazine, DCMU and metolachlor on phytoplankton cultures and communities at environmentally relevant concentrations using Fast Repetition Rate Fluorescence

The widespread and persistent contamination of freshwater environments by low concentrations of pesticides is a growing concern worldwide. In aquatic environments, herbicide pollution is of greatest concern for phytoplankton, due to their similarities to terrestrial plants. Through the use of Fast Repetition Rate Fluorometry (FRRF) during weeklong experiments on 10 phytoplankton cultures from 4 classes and 4 natural communities, we demonstrate that PSII-inhibiting herbicides, notably atrazine that is extensively used in North America, consistently have effects on freshwater phytoplankton photophysiology at concentrations far below concentrations affecting the most sensitive species in previous studies. The parameters specific to FRRF (Ρ, σ, τ1, τ2, τ3) were those most sensitive to PSII inhibitors, compared to the standard fluorescence parameters derived from other fluorescence protocols such as Pulse Amplitude Modulation (PAM) fluorometry (F0, Fm, Fv/Fm) and extracted chlorophyll a concentrations. Based on these findings, existing national environmental guidelines and standards are insufficient to adequately prevent adverse effects of atrazine and other PSII inhibiting herbicides on algal physiology in aquatic ecosystems.

Time‐series observations of photosynthetic oxygen production in the subtropical western North Pacific by an underwater profiling buoy system

AbstractWe conducted time‐series observations in the northwestern part of the North Pacific subtropical gyre (30°N, 145°E) from July 2012 to March 2013 using a profiling buoy system equipped with a fast repetition rate fluorometer and dissolved oxygen (DO) sensor in order to understand vertical and temporal variations in gross oxygen production (GOP) by phytoplankton and its contribution to the oxygen cycle in the upper ocean. Under stratified conditions (July–November), daily GOP slightly exceeded 2 mmol O2 m−3 d−1 and only in near‐surface waters. However, during periods of vertical mixing (December–March) when phytoplankton blooms occurred, daily GOP increased in the upper 30 m and often exceeded 5 mmol O2 m−3 d−1. The depth‐integrated daily GOP within the euphotic layer (∫GOPEL) was relatively low (84.0 ± 23.6 mmol O2 m−2 d−1) during stratification, but increased gradually with vertical mixing and reached 460 mmol O2 m−2 d−1 on 17 March 2013. Additionally, during stratified conditions, a subsurface oxygen maximum (SOM) formed below the mixed‐layer depth (MLD) because the steep density gradient constrained upward diffusion of oxygen produced below the MLD. During the period of vertical mixing, the SOM disappeared, and DO concentrations within the upper 100 m increased through both increasing ∫GOPEL and atmospheric oxygen uptake. Using our buoy observations and air–sea gas flux model, we estimated that 24% ± 7% of ∫GOPEL was emitted to the atmosphere during the stratification period, and ∫GOPEL during the mixing period was about 2.4 times the rate of oxygen uptake by the ocean from the atmosphere.

Dynamic variability of the phytoplankton electron requirement for carbon fixation in eastern Australian waters

Fast Repetition Rate fluorometry (FRRf) generates high-resolution measures of phytoplankton primary productivity as electron transport rates (ETRs). How ETRs scale to corresponding inorganic carbon (C) uptake rates (the so-called electron requirement for carbon fixation, e,C), inherently describes the extent and effectiveness with which absorbed light energy drives C-fixation. However, it remains unclear whether and how e,C follows predictable patterns for oceanographic datasets spanning physically dynamic, and complex, environmental gradients. We utilise a unique high-throughput approach, coupling ETRs and 14C-incubations to produce a semi-continuous dataset of e,C (n = 80), predominantly from surface waters, along the Australian coast (Brisbane to the Tasman Sea), including the East Australian Current (EAC). Environmental conditions along this transect could be generally grouped into cooler, more nutrient-rich waters dominated by larger size-fractionated Chl-a (>10 um) versus warmer nutrient-poorer waters dominated by smaller size-fractionated Chl-a (< 2 um). Whilst e,C was higher for warmer water samples, environmental conditions alone explained less than 20% variance of e,C, and changes in predominant size-fraction(s) distributions of Chl-a (biomass) failed to explain variance of e,C. Instead, NPQNSV was a better predictor of e,C, explaining 55% of observed variability. NPQNSV is a physiological descriptor that accounts for changes in both long-term driven acclimation in non-radiative decay, and quasi-instantaneous PSII downregulation, and thus may prove a useful predictor of e,C across physically-dynamic regimes, provided the slope describing their relationship is predictable.

High-resolution underway measurements of phytoplankton photosynthesis and abundance as an innovative addition to water quality monitoring programs

Abstract. Marine waters can be highly heterogeneous both on a spatial and temporal scale, yet monitoring programs currently rely primarily on low-resolution methods. This potentially leads to undersampling. This study explores the potential of two high-resolution methods for monitoring phytoplankton dynamics: fast repetition rate fluorometry for information on phytoplankton photosynthesis and productivity and automated scanning flow cytometry for information on phytoplankton abundance and community composition. These methods were tested in combination with an underway Ferrybox system during four cruises on the Dutch North Sea in April, May, June, and August 2017. The high-resolution methods were able to visualize both the spatial and temporal variability of the phytoplankton community in the Dutch North Sea. Spectral cluster analysis was applied to objectively interpret the multitude of parameters and visualize potential spatial patterns. This resulted in the identification of biogeographic regions with distinct phytoplankton communities, which varied per cruise. Our results clearly show that the sampling based on fixed stations does not give a good representation of the spatial patterns, showing the added value of underway high-resolution measurements. To fully exploit the potential of the tested high-resolution measurement setup, methodological constraints need further research. Among these constraints are accounting for the diurnal cycle in photophysiological parameters concurrent to the spatial variation, better predictions of the electron requirement for carbon fixation to estimate gross primary productivity, and the identification of more flow cytometer clusters with informative value. Nevertheless, the richness of additional information provided by high-resolution methods can improve existing low-resolution monitoring programs towards a more precise and ecosystemic ecological assessment of the phytoplankton community and productivity.

Auditory temporal acuity improves with age in the male mouse auditory thalamus: A role for perineuronal nets?

The ability to perceive and interpret environmental sound accurately is conserved across many species and is fundamental for understanding communication via vocalizations. Auditory acuity and temporally controlled neuronal firing underpin this ability. Deterioration in neuronal firing precision likely contributes to poorer hearing performance, yet the role of neural processing by key nuclei in the central auditory pathways is not fully understood. Here, we record from the auditory thalamus (medial geniculate body [MGB]) of young and middle-aged, normally hearing male CBA/Ca mice. We report changes in temporal processing of auditory stimuli, with neurons recorded from ventral and medial MGB subdivisions of older animals more likely to synchronize to rapid temporally varying stimuli. MGB subdivisions also showed increased probability of neuronal firing and shorter response latencies to clicks in older animals. Histological investigation of neuronal extracellular specializations, perineuronal nets (PNNs) and axonal coats, in the MGB identified greater organization of PNNs around MGB neurons and the presence of axonal coats within older animals. This supports the observation that neural responses recorded from ventral and medial MGB of older mice were more likely to synchronize to temporally varying stimuli presented at faster repetition rates than those recorded from young adult animals. These changes are observed in animals with normal hearing thresholds, confirming that neural processing differs between the MGB subdivisions and such processing is associated with age-related changes to PNNs. Understanding these age-related changes and how they occur have important implications for the design of effective therapeutic interventions to improve speech intelligibility into later life.

Uncertainties in variable fluorescence and 14C methods to estimate primary production: a case study in the coastal waters off the Korean peninsula

MEPS Marine Ecology Progress Series Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections MEPS 627:13-31 (2019) - DOI: https://doi.org/10.3354/meps13083 Uncertainties in variable fluorescence and 14C methods to estimate primary production: a case study in the coastal waters off the Korean peninsula Eunho Ko1,2, Jisoo Park1,2, Maxim Y. Gorbunov3, Sinjae Yoo2,4,* 1Division of Polar Ocean Environment, Korea Polar Research Institute, 26 Songdomirae-ro, Yeonsu-Gu, Incheon 21990, Republic of Korea 2University of Science and Technology, 217 Gajeongh-ro, Daejeon 34113, Republic of Korea 3Department of Marine and Coastal Sciences, Rutgers University, New Brunswick, New Jersey 08901, USA 4Jeju Marine Research Section, Korea Institute of Ocean Science & Technology, 2670 lljudong-ro, Gujwa-eup, Jeju-si, Jeju-do 63349, Republic of Korea *Corresponding author: sjyoo@kiost.ac.kr ABSTRACT: To understand what controls the decoupling of photosynthetic electron transfer and carbon fixation in natural phytoplankton communities, we compared the primary production rates estimated by 14C uptake and fast repetition rate fluorometry (FRRF) in Korean waters under diverse environmental conditions. Our comparison showed that these 2 methods produce consistent results, with the FRRF method systematically yielding 1.9 times higher values than the 14C method. To quantify the potential factors that contribute to this discrepancy, we analyzed the variability in the electron requirement for carbon fixation, which showed a wide range of 5.5-71.3 mol electrons (mol CO2)-1, in relation to environmental variables. The analysis revealed that nutrient availability and the state of stratification may be the major factors that control variability in the electron requirement for carbon fixation. The strong dependence on nitrogen suggests that photosynthetic processes and phytoplankton growth are not in balance in natural communities. Based on the relationship with environmental variables, we propose a regional algorithm for the electron requirement for carbon fixation, which markedly improves FRRF-based measurements of primary production in this geographical area. KEY WORDS: Primary production · 14C · Variable fluorescence · Electron requirement for carbon fixation · Electron transfer rate · Fast repetition rate fluorometry Full text in pdf format PreviousNextCite this article as: Ko E, Park J, Gorbunov MY, Yoo S (2019) Uncertainties in variable fluorescence and 14C methods to estimate primary production: a case study in the coastal waters off the Korean peninsula. Mar Ecol Prog Ser 627:13-31. https://doi.org/10.3354/meps13083 Export citation Mail this link - Contents Mailing Lists - RSS Facebook - Tweet - linkedIn Cited by Published in MEPS Vol. 627. Online publication date: September 26, 2019 Print ISSN: 0171-8630; Online ISSN: 1616-1599 Copyright © 2019 Inter-Research.

Characterizing photosymbiosis in modern planktonic foraminifera

Abstract. Photosymbiosis has played a key role in the diversification of foraminifera and their carbonate production throughout geologic history. However, identification of photosymbiosis in extinct taxa remains challenging, and even among the extant species the occurrence and functional relevance of photosymbiosis remain poorly constrained. Here, we investigate photosymbiosis in living planktonic foraminifera by measuring active chlorophyll fluorescence with fast repetition rate fluorometry. This method provides unequivocal evidence for the presence of photosynthetic capacity in individual foraminifera, and it allows us to characterize multiple features of symbiont photosynthesis including chlorophyll a (Chl a) content, potential photosynthetic activity (Fv∕Fm), and light-absorption efficiency (σPSII). To obtain robust evidence for the occurrence and importance of photosymbiosis in modern planktonic foraminifera, we conducted measurements on 1266 individuals from 30 species of the families Globigerinidae, Hastigerinidae, Globorotaliidae, and Candeinidae. Among the studied species, 19 were recognized as symbiotic and 11 as non-symbiotic. Of these, six species were newly confirmed as symbiotic and five as non-symbiotic. Photosymbiotic species have been identified in all families except the Hastigerinidae. A significant positive correlation between test size and Chl a content, found in 16 species, is interpreted as symbiont abundance scaled to the growth of the host and is consistent with persistent possession of symbionts through the lifetime of the foraminifera. The remaining three symbiont-bearing species did not show such a relationship, and their Fv∕Fm values were comparatively low, indicating that their symbionts do not grow once acquired from the environment. The objectively quantified photosymbiotic characteristics have been used to design a metric of photosymbiosis, which allows the studied species to be classified along a gradient of photosynthetic activity, providing a framework for future ecological and physiological investigations of planktonic foraminifera.

Fast repetition rate fs pulsed lasers for advanced PLIM microscopy

Simultaneous metabolic and oxygen imaging is promising to follow up therapy response, disease development and to determine prognostic factors. FLIM of metabolic coenzymes is now widely accepted to be the most reliable method to determine cellular bioenergetics. Also, oxygen consumption has to be taken into account to understand treatment responses. The phosphorescence lifetime of oxygen sensors is able to indicate local oxygen changes. For phosphorescence lifetime imaging (PLIM) dyes based on ruthenium (II) coordination complexes are useful, in detail TLD1433 which possesses a variety of different triplet states, enables complex photochemistry and redox reactions. PLIM is usually reached by two photon excitation of the drug with a femtosecond (fs) pulsed Ti:Sapphire laser working at 80[Formula: see text]MHz repetition rate and (time-correlated single photon counting) (TCSPC) detection electronics. The interesting question was whether it is possible to follow up PLIM using faster repetition rates. Faster repetition rates could be advantageous for the induction of specific photochemical reactions because of similar light doses used normally in standard CW light treatments. For this, a default 2[Formula: see text]-FLIM–PLIM system was expanded by adding a second fs pulsed laser (“helixx”) which provides 50[Formula: see text]fs pulses at a repetition rate of 250[Formula: see text]MHz, more than 2.3[Formula: see text]W average power and tunable from 720[Formula: see text]nm to 920[Formula: see text]nm. The laser beam was coupled into the AOM instead of the default 80[Formula: see text]MHz laser. We demonstrated successful applications of the 250[Formula: see text]MHz laser for PLIM which correlates well with measurements done by excitation with the conventional 80[Formula: see text]MHz laser source.

Primary Productivity Dynamics in the Summer Arctic Ocean Confirms Broad Regulation of the Electron Requirement for Carbon Fixation by Light-Phytoplankton Community Interaction

Predicting conversion of photosynthetic electron transport to inorganic carbon uptake rates (the so-called electron requirement for carbon fixation, KC) is central to the broad scale deployment of Fast Repetition Rate fluorometry (FRRf) for primary productivity studies. However, reconciling variability of KC over space and time to produce robust algorithms remains challenging given the large number of factors that influence KC. We have previously shown that light appears a proximal driver of Kc in several ocean regions and therefore examined whether and how light similarly regulated KC variability in the Arctic Ocean during a summer cruise 2016. Sampling transited ice-free and ice-covered waters, with temperature, salinity and Chl-a concentrations all higher for the ice-free than ice covered surface waters. Micro- and pico-phytoplankton generally dominated the ice-free and ice-covered waters respectively. Values of KC, determined from parallel measures of daily integrated electron transport rates and 14C-uptake, were overall lower for the ice-covered versus ice-free stations. As in our previous studies, KC was strongly linearly correlated to daily PAR (r=0.68, n=46, p<0.001) and this relationship could be further improved (r=0.84, n=46, p<0.001) by separating samples into ice-free (micro-phytoplankton dominated) versus ice-covered (Nano- and Pico-phytoplankton dominated water. We subsequently contrasted the PAR-KC relationship form the Arctic waters with the previous relationships from the Ariake Bay and East China Sea, and revealed that these various PAR-KC relationships can be systematically explained across regions by phytoplankton community size structure. Specifically, the value of the linear slope describing PAR-KC decreases as water bodies have an increasing fraction of larger phytoplankton. We propose that this synoptic trend reflects how phytoplankton community structure integrates past and immediate environmental histories and hence may be better broad-scale predictor of KC than specific environmental factors such as temperature and nutrients. We provide a novel algorithm that may enable broad-scale retrieval of CO2 uptake from FRRf with knowledge of light and phytoplankton community size information.

Fast Repetition Rate Fluorometry (FRRF) Derived Phytoplankton Primary Productivity in the Bay of Bengal

The approach of fast repetition rate fluorometry (FRRF) requires a conversion factor (Φe : C/nPSII) to derive ecologically-relevant carbon uptake rates (PPz,t). However, the required Φe : C/nPSII is commonly measured by 14C assimilation and varies greatly across phytoplankton taxonomy and environmental conditions. Consequently, the use of FRRF to estimate gross primary productivity (GPz,t), alone or in combination with other approaches, has been restricted by both inherent conversion and procedural inconsistencies. Within this study, based on a hypothesis that the non-photochemical quenching (NPQNSV) can be used as a proxy for the variability and magnitude of Φe : C/nPSII, we thus proposed an independent field model coupling with the NPQNSV-based Φe : C/nPSII for FRRF-derived carbon, without the need for additional Φe : C/nPSII in the Bay of Bengal (BOB). Therewith, this robust algorithm was verified by the parallel measures of electron transport rates and 14C-uptake PPz,t. NPQNSV is theoretically caused by the effects of excess irradiance pressure, however, it showed a light and depth-independent response on large spatial scales of the BOB. Trends observed for the maximum quantum efficiency (Fv/Fm), the quantum efficiency of energy conversion (/) and the efficiency of charge separation (/) were similar and representative, which displayed a relative maximum at the subsurface and were collectively limited by excess irradiance. In particular, most observed values of Fv/Fm in the BOB were only about half of the values expected for nutrient replete phytoplankton. FRRF-based estimates of electron transport at PSII (ETRRCII) varied significantly, from 0.01 to 8.01 mol e− mol RCII−1 s−1, and showed profound responses to depth and irradiance across the BOB, but fitting with the logistic model. N, P, and irradiance are key environmental drivers in explaining the broad-scale variability of photosynthetic parameters. Furthermore, taxonomic shifts and physiological changes may be better predictors of photosynthetic parameters, and facilitate the selection of better adapted species to optimize photosynthetic efficiency under any particular set of ambient light condition.