The academic discourse of agricultural biotechnology carries a lot of information on how biotechnology crops are crucial in realizing food security once they are fully adopted by farmers. Biotechnology crops are seen as the solution to ameliorate the Malthusian catastrophe of population increase threatening food security. While studies on agricultural biotechnology are increasing, they mainly focus on how the new agriculture science produces crops with desirable traits in supporting food production interventions. Few studies have concerned themselves with the social justice implications among smallholder farmers, posed by institutionalised agricultural biotechnology knowledge with its sophistication. This paper addresses itself to the above lacuna. The data collection used an embedded mixed method design with focus group discussions, in-depth interviews, non-participant observation, and questionnaire survey methods. The paper shows that mechanisms that are used to promote biotechnology crops are highly institutionalized. The institutions not only develop the biotechnology crops but also engage in mechanisms that encourage smallholder farmers to adopt these crops. The major social justice concerns addressed by this study are plant diversity, equity and commercialization of biotechnology-generated seeds/crops, participation, and farming choices