This work investigates a Fano filter design based on a nano-hole array, patterned in fused silica using high-energy ultrafast femtosecond laser pulses. After carefully observing the experimental results, the structural profile of the nano-holes is numerically modeled in a 3D finite-difference time-domain-based software platform. The metasurface design consists of conical shaped air holes structured in the substrate, and a later deposited waveguide layer which leaves craters on the surface as the material fills inside the nano-holes. The spectral properties of the device are studied against variations in the structural parameters, such as the depth of the nano-holes, its surface diameter, and the depth of the craters on the surface of the waveguide. The proposed Fano filter device is designed to operate in the near-infrared (NIR) wavelength range around a telecommunication window of 1550 nm. Multiple narrowband resonances are observed with a linewidth in the range of 1.4 to 24.2 nm and a quality factor of 66.51 to 1090.12. The device shows good spectral tunability over a wide range from 1380 to 1650 nm comprising multiple narrowband resonances and variations in the structural parameters. Since the device can be implemented using a cost-effective and rapid fabrication method, it can be proposed for use in various optical filtering and sensing applications.