Extraordinary Abundance Research Articles

Preferential acceleration of heavy ions in magnetic reconnection: Hybrid-kinetic simulations with electron inertia

Solar energetic particles (SEPs) in the energy range 10s KeV/nucleon - 100s MeV/nucleon originate from the Sun. Their high flux near Earth may damage the space-borne electronics and generate secondary radiation that is harmful for life on Earth. Thus, understanding their energization on the Sun is important for space weather prediction. Impulsive (or $ $He-rich) SEP events are associated with the acceleration of charge particles in solar flares by magnetic reconnection and related processes. The preferential acceleration of heavy ions and the extraordinary abundance enhancement of $ ^3$He in the impulsive SEP events are not understood yet. In this paper we study the acceleration of heavy ions and its consequences for their abundance enhancements by magnetic reconnection, an established acceleration source for impulsive SEP events in which heavy-ion enhancement is observed We employed a two-dimensional hybrid-kinetic plasma model (kinetic ions and inertial electron fluid) to simulate magnetic reconnection. All the ion species are treated self-consistently in our simulations. We find that heavy ions are preferentially accelerated to energies many times higher than their initial thermal energies by a variety of acceleration mechanisms operating in reconnection. The most efficient acceleration takes place in the flux pileup regions of magnetic reconnection. Heavy ions with sufficiently low values of charge-to-mass ratio ($Q/M$) can be accelerated by pickup mechanism in outflow regions even before any magnetic flux is piled up. The energy spectra of heavy ions develop a shoulder-like region, a nonthermal feature, as a result of the acceleration. The spectral index of the power-law fit to the shoulder region of the spectra varies approximately as $(Q/M)^ $. The abundance enhancement factor, defined as the number of particles above a threshold energy normalized to the total number of particles, scales as $(Q/M)^ alpha $, where alpha increases with the energy threshold. We discuss our simulation results in the light of the SEP observations.

Diverse Xylaria in the Ecuadorian Amazon and their mode of wood degradation

BackgroundXylaria is a diverse and ecologically important genus in the Ascomycota. This paper describes the xylariaceous fungi present in an Ecuadorian Amazon Rainforest and investigates the decay potential of selected Xylaria species. Fungi were collected at Yasuní National Park, Ecuador during two collection trips to a single hectare plot divided into a 10-m by 10-m grid, providing 121 collection points. All Xylaria fruiting bodies found within a 1.2-m radius of each grid point were collected. Dried fruiting bodies were used for culturing and the internal transcribed spacer region was sequenced to identify Xylaria samples to species level. Agar microcosms were used to assess the decay potential of three selected species, two unknown species referred to as Xylaria 1 and Xylaria 2 and Xylaria curta, on four different types of wood from trees growing in Ecuador including balsa (Ochroma pyramidale), melina (Gmelina arborea), saman (Samanea saman), and moral (Chlorophora tinctoria). ANOVA and post-hoc comparisons were used to test for differences in biomass lost between wood blocks inoculated with Xylaria and uninoculated control blocks. Scanning electron micrographs of transverse sections of each wood and assay fungus were used to assess the type of degradation present.Results210 Xylaria collections were sequenced, with 106 collections belonging to 60 taxa that were unknown species, all with less than 97% match to NCBI reference sequences. Xylaria with sequence matches of 97% or greater included X. aff. comosa (28 isolates), X. cuneata (9 isolates) X. curta and X. oligotoma (7 isolates), and X. apiculta (6 isolates)., All Xylaria species tested were able to cause type 1 or type 2 soft rot degradation in the four wood types and significant biomass loss was observed compared to the uninoculated controls. Balsa and melina woods had the greatest amount of biomass loss, with as much as 60% and 25% lost, respectively, compared to the controls.ConclusionsXylaria species were found in extraordinary abundance in the Ecuadorian rainforest studied. Our study demonstrated that the Xylaria species tested can cause a soft rot type of wood decay and with the significant amount of biomass loss that occurred within a short incubation time, it indicates these fungi likely play a significant role in nutrient cycling in the Amazonian rainforest.

Nyssomyia whitmani (Diptera: Psychodidae) Activity From Sunset to Sunrise: A Two-Year Study in a Rural Area in Northeast Argentina.

We model the nocturnal patterns of the main vector of Leishmania braziliensis (Vianna) in the Paranaense region of South America, Nyssomyia whitmani (Antunes & Coutinho). Occurrence and abundance variation were analyzed by hourly periods, and in relation to sunrise and sunset to avoid differences in luminosity at fixed times throughout the year. The possible role of climatic and environmental variables on nocturnal activity curves was explored. A rotating light trap was operated biweekly in the peridomestic henhouse of a farm in Puerto Iguazú, from May 2016 to May 2018. Ny. whitmani, is the predominant Phlebotominae species (6,720 specimens captured), and is present throughout the night and seasons. Generalized additive models of nocturnal abundance of Ny. whitmani show a bell shape with an acrophase in the early evening. Models of abundance distribution as a function of total abundance showed significant nonlinear variations, only for the tertile of highest vector abundance, in the curves by hourly periods, and related to dawn, while female abundance relative to total abundance showed an asymptotic increasing curve, suggesting density-dependent events with abundance thresholds. Finally, temperature was the variable that best explained the pattern of abundance distribution of Ny. whitmani during the night, although triggers for scotophase activity due to internal clocks or luminosity could not be ruled out. The relationship of activity and abundance with climatic variables would also explain the nights of extraordinary abundance, and therefore of greater probability of vector-human and vector-reservoir contacts.

Detrital supply suppresses deforestation to maintain healthy kelp forest ecosystems.

Herbivores can reach extraordinary abundances in many ecosystems. When herbivore abundance is high, heavy grazing can severely defoliate primary producers and, in some cases, even drive ecosystem to undergo regime shifts from a high productivity state to a denuded, low productivity state. While the phenomenon of herbivore-driven regime shifts is well documented, we only partially understand the mechanisms underlying these events. Here, we combine herbivory experiments with 21 years of long-term monitoring data of kelp forest ecosystems to test the hypothesis that herbivores drive regime shifts when herbivory exceeds primary production. To test this hypothesis, we quantified how the foraging habits of an important group of marine herbivores-sea urchins-change with increases in sea urchin biomass and trigger regime shifts to a foundation species, giant kelp (Macrocystis pyrifera). Using experiments, we quantified how the grazing capacity of urchins increases as urchin biomass increases, then we combined these estimates of urchin grazing capacity with estimates of kelp production to predict when and where urchin grazing capacity exceeded kelp production. When grazing capacity exceeded kelp production, sea urchins caused a 50-fold reduction in giant kelp biomass. Our findings support the hypothesis that the balance between herbivory and production underlies herbivore-driven regime shifts in Southern California kelp forests and provides insight into when and where urchins are likely to force regime shifts in kelp forest ecosystems.

New Findings on the Biology and Ecology of the Ecuadorian Amazon Fungus Polyporus leprieurii var. yasuniensis

Polyporus leprieurii var. yasuniensis is a prolific wood-decay fungus inhabiting the forest floor of one of the most biodiverse places on earth, the Yasuní National Park in Ecuador. Basidiocarps and aerial rhizomorphs are commonly found growing on woody debris distributed along the floor of this forest ecosystem. Because of the extraordinary abundance of this fungus in the tropical rainforest, we carried out investigations to better understand the biological and ecological aspects contributing to its prolific distribution. Data on growth inhibition in paired competition studies with sixteen fungal isolates exemplifies defense mechanisms used to defend its territory, including pseudosclerotial plates and the development of a melanized rhizomorphic mat. Results of biomass loss on eleven types of tropical wood in microcosm experiments demonstrated the broad decay capacity of the fungus. In and ex situ observations provided information on how long rhizomorphs can prevail in highly competitive ecosystems as well as stressful conditions in the laboratory. Finally, high concentrations of metal ions occur on rhizomorphs as compared to colonized wood. Sequestration of metal ions from the environment by the melanized rhizomorphs may offer protection against competitors. The development of melanized rhizomorphs is key to find and colonize new substrates and resist changing environmental conditions.

Metagenomic analysis of viral community in the Yangtze River expands known eukaryotic and prokaryotic virus diversity in freshwater.

Viruses in aquatic ecosystems are characterized by extraordinary abundance and diversity. Thus far, there have been limited studies focused on viral communities in river water systems. Here, we investigated the virome of the Yangtze River Delta using viral metagenomic analysis. The compositions of viral communities from six sampling sites were analyzed and compared. By using library construction and next generation sequencing, contigs and singlet reads similar to viral sequences were classified into 17 viral families, including nine dsDNA viral families, four ssDNA viral families and four RNA viral families. Statistical analysis using Friedman test suggested that there was no significant difference among the six sampling sites (P ​> ​0.05). The viromes in this study were all dominated by the order Caudovirales, and a group of Freshwater phage uvFW species were particularly prevalent among all the samples. The virome from Nanjing presented a unique pattern of viral community composition with a relatively high abundance of family Parvoviridae. Phylogenetic analyses based on virus hallmark genes showed that the Caudovirales order and CRESS-DNA viruses presented high genetic diversity, while viruses in the Microviridae and Parvoviridae families and the Riboviria realm were relatively conservative. Our study provides the first insight into viral community composition in large river ecosystem, revealing the diversity and stability of river water virome, contributing to the proper utilization of freshwater resource.

Early Miocene small mammals from MWQ1/2001 Turtle Joint (Mokrá-Quarry, South Moravia, Czech Republic): biostratigraphical and palaeoecological considerations

Mokra-Quarry (South Moravia, Czech Republic) represents a unique fossil site with an extraordinary abundance and diversity of vertebrate fossil remains. Most research on Mokra-Quarry localities was focused on herpetofauna. Despite its relevance, the mammal fauna has not been yet studied in detail. In this work, the small mammals from one of the karstic fissures, Mokra´-Western Quarry (1/2001 Turtle Joint), are thoroughly described for the first time, including eight different taxa: Prolagus schnaitheimensis, Prolagus cf. vasconinensis, Rhinolophus cf. cluzeli, Rhinolophus cf. grivensis, Galerix sp., Aliveria aff. luteyni, Megacricetodon sp., and Melissiodon dominans. The Megacricetodon finds represent one of the first appearances of this cricetid in Central Europe and sheds light on the early evolution of the genus. Moreover, the small mammal assemblage confirms an early Miocene age (Burdigalian, MN4) for MWQ1/2001. The paleoenvironment inferred shows a dry karst landscape, with patches of woodlands and open steppe, together with marshy areas.

Sociedades dramatizadas: la ficción televisiva de calidad en España y México

Durante la última década, España y México han producido una extraordinaria abundancia de drama televisivo y se encuentran entre los líderes de sus respectivos continentes. Solo en 2014, México produjo más de cien mil horas de televisión que se exportaron a cien países. A diferencia del caso del cine, más frágil y vulnerable puesto que depende de los subsidios del gobierno y está dominado por Hollywood en las salas locales, la televisión en ambos países es una industria que goza de mucho éxito, conecta con el público nacional y lleva la producción de Estados Unidos al margen de la parrilla. Este trabajo tiene como objetivo explorar las similitudes significativas que existen entre estos dos territorios. Para ello, se recurre al estudio de los casos más relevantes de la ficción dramatizada en cada uno de los dos países.

Is the human T-cell lymphotropic virus type 2 in the process of endogenization into the human genome?

Human T-cell lymphotropic virus type 2 (HTLV-2) infection has been shown to be endemic among intravenous drug users in parts of North America, Europe and Southeast Asia and in a number of Amerindian populations. Despite a 65% genetic similarity and common host humoral response, the human T-cell lymphotropic viruses type 1 (HTLV-1) and 2 display different mechanisms of host interaction and capacity for disease development. While HTLV-1 pathogenicity is well documented, HTLV-2 etiology in human disease is not clearly established. From an evolutionary point of view, its introduction and integration into the germ cell chromosomes of host species could be considered as the final stage of parasitism and evasion from host immunity. The extraordinary abundance of endogenous viral sequences in all vertebrate species genomes, including the hominid family, provides evidence of this invasion. Some of these gene sequences still retain viral characteristics and the ability to replicate and hence are potentially able to elicit responses from the innate and adaptive host immunity, which could result in beneficial or pathogenic effects. Taken together, this data may indicate that HTLV-2 is more likely to progress towards endogenization as has happened to the human endogenous retroviruses millions of years ago. Thus, this intimate association (HTLV-2/human genome) may provide protection from the immune system with better adaptation and low pathogenicity.

Origin of dissolved organic matter in the Harz Mountains (Germany): A thermally assisted hydrolysis and methylation (THM-GC–MS) study

Environmental change is increasing the concentration of dissolved organic matter (DOM) in catchments of the Northern Hemisphere. This study aims to assess the causes of high DOM concentrations in streams and reservoirs of the Harz National Park (Germany), by means of molecular characterization using thermally assisted hydrolysis and methylation (THM-GC–MS). In order to formulate proxies of the prevailing origin of the numerous THM products of polyphenols, carbohydrates, proteins, aliphatic macromolecules, resins and other DOM precursors, we created a reference sample set of potential sources (spruce, birch, blueberry, heather, peat moss, soils) from the area. Besides solid-state reference samples (bulk organic matter; BOM) we obtained and analyzed their leachates (water-extractable OM; WEOM). Finally, an existing THM-GC–MS dataset of the DOM from the Oder river, which crosses the boundary between peat and forest biomes in the Harz, was extended and explored chemometrically using Principal Component Analysis (PCA) to test the proxies for stream DOM assessment. The results show large differences between BOM and WEOM, which suggests that the solid-to-leachate transition is highly selective or significantly alters the major biomolecular constituents. THM compounds that tend to be more abundant in WEOM than in BOM are G-type phenolic compounds (1,2-dimethoxybenzenes, from lignin and tannin), nitrogen-containing moieties and benzene carboxylic acids, whereas WEOM is depleted in products of polysaccharides, syringyl lignin and aliphatic macromolecules (cutin and suberin). The lignin fingerprint of the WEOM also differs significantly from that of BOM, being depleted in the vast majority of the typical products of macromolecular lignin (G7, G8, G14, G15) and enriched in the acid moiety (G6, predominantly from vanillic acid), especially for spruce wood. THM chromatograms of DOM from the forest section of the Oder show an extraordinary abundance of G6, most probably from spruce-derived lignin. This may indicate a major role of DOM released from decaying spruce logs and forest soils. The results highlight both the potential and the pitfalls associated with source identification of DOM using THM-GC–MS.

Troubled Waters in New Zealand

ABSTRACT Blessed with an extraordinary abundance of freshwater, New Zealand faces complex governance challenges of simultaneously protecting public health, powering the country, bolstering its economy, and honoring obligations to its Indigenous population—all which are water-dependent. In this article, we discuss New Zealand’s water quality challenges, water governance structure, and analyzed the framing of its water issues and polices by the country’s two main parties and two key interest groups before and after a major contamination crisis in Havelock North, which caused widespread illness. While the 2016 Havelock North drinking water contamination crisis was illustrative of New Zealand’s laissez-faire approach toward freshwater quality and its impact on environmental and human health, we found different frames by the two major political parties about this fundamental resource. Examining this event as a catalyst, we consider its effect on framing and policy.

Metagenome Mining Reveals Hidden Genomic Diversity of Pelagimyophages in Aquatic Environments.

The SAR11 clade is one of the most abundant bacterioplankton groups in surface waters of most of the oceans and lakes. However, only 15 SAR11 phages have been isolated thus far, and only one of them belongs to the Myoviridae family (pelagimyophages). Here, we have analyzed 26 sequences of myophages that putatively infect the SAR11 clade. They have been retrieved by mining ca. 45 Gbp aquatic assembled cellular metagenomes and viromes. Most of the myophages were obtained from the cellular fraction (0.2 μm), indicating a bias against this type of virus in viromes. We have found the first myophages that putatively infect Candidatus Fonsibacter (freshwater SAR11) and another group putatively infecting bathypelagic SAR11 phylogroup Ic. The genomes have similar sizes and maintain overall synteny in spite of low average nucleotide identity values, revealing high similarity to marine cyanomyophages. Pelagimyophages recruited metagenomic reads widely from several locations but always much more from cellular metagenomes than from viromes, opposite to what happens with pelagipodophages. Comparing the genomes resulted in the identification of a hypervariable island that is related to host recognition. Interestingly, some genes in these islands could be related to host cell wall synthesis and coinfection avoidance. A cluster of curli-related proteins was widespread among the genomes, although its function is unclear.IMPORTANCE SAR11 clade members are among the most abundant bacteria on Earth. Their study is complicated by their great diversity and difficulties in being grown and manipulated in the laboratory. On the other hand, and due to their extraordinary abundance, metagenomic data sets provide enormous richness of information about these microbes. Given the major role played by phages in the lifestyle and evolution of prokaryotic cells, the contribution of several new bacteriophage genomes preying on this clade opens windows into the infection strategies and life cycle of its viruses. Such strategies could provide models of attack of large-genome phages preying on streamlined aquatic microbes.

Rhizomatic Cities in Italo Calvino’s <i>Invisible Cities</i>

Italo Calvino’s highly successful novel Invisible Cities thoroughly explains Deleuze and Guattari’s famous postmodern concept of rhizome. The cities in the novel do not possess a fixed and coherent structure; rather they exude a structurality that is immensely fleeting and continually evolving. Calvino’s novel Invisible Cities which ironically precedes Deleuze and Guattari’s book A Thousand Plateaus clearly demonstrates the defining characteristic features of rhizome through the unusual and seemingly incomprehensible structure of the individual cities. There have been scanty critical responses in the past regarding the rhizomatic behavior of Calvino’s cities, despite an extraordinary abundance of critical works existing on Calvino’s writing. The rhizomatic patterns of Calvino’s cities, it is believed by the author, need further critical attention. Rhizome, through its perpetually unstable structural modeling, perhaps most effectively demonstrates our utterly disarrayed postmodern condition of existence where any desired structural stability and coherence is a virtual impossibility, and of this trait, Calvino’s cities in the said novel are the principal demonstrators. Based on these precepts, this article intends to analyze how Calvino’s cities in the novel, with their perpetual and immense structural variabilities, exude before the readers a typical postmodern world that wholesomely discards the very idea of structural coherence and stability.

Sunning themselves in heaps, knots, and snarls: The extraordinary abundance and demography of island watersnakes.

Snakes represent a sizable fraction of vertebrate biodiversity, but until recently, data on their demography have been sparse. Consequently, generalizations regarding patterns of variation are weak and the potential for population projections is limited. We address this information gap through an analysis of spatial and temporal variation in demography (population size, annual survival, and realized population growth) of the Lake Erie Watersnake, Nerodia sipedon insularum, and a review of snake survival more generally. Our study spans a period during which the Lake Erie Watersnake was listed as threatened under the U.S. Endangered Species Act, recovered, and was delisted. We collected capture–mark–recapture data at 14 study sites over 20 years, accruing 20,000 captures of 13,800 individually marked adults. Lake Erie Watersnakes achieve extraordinary abundance, averaging 520 adults per km of shoreline (ca. 260 adult per ha) at our study sites (range = 160–1,600 adults per km; ca. 80–800 adults per ha) and surpassing population recovery and postdelisting monitoring criteria. Annual survival averages 0.68 among adult females and 0.76 among adult males, varies among sites, and is positively correlated with body size among study sites. Temporal process variance in annual survival is low, averaging 0.0011 or less than 4% of total variance; thus, stochasticity in annual survival may be of minor significance to snake extinction risk. Estimates of realized population growth indicate that population size has been stable or increasing over the course of our study. More generally, snake annual survival overlaps broadly across continents, climate zones, families, subfamilies, reproductive modes, body size categories, maturation categories, and parity categories. Differences in survival in relation to size, parity, and maturation are in the directions predicted by life history theory but are of small magnitude with much variation around median values. Overall, annual survival appears to be quite plastic, varying with food availability, habitat quality, and other ecological variables.

Land use influences harvestman diversity in northern Spain: a case study involving secondary grasslands and forest plantations (Arachnida: Opiliones)

Harvestmen have a general distribution pattern with more species and higher abundance in forests than in open habitats, as previously verified in mountain Cantabrian areas of northern Spain, of the Orocantabrian Province. The study of harvestmen of the low Cantabrian areas of the adjacent biogeographic Cantabro-Atlantic Province is highly appropriate to determine the influence of biogeographic position on the main diversity parameters and the effect of different land uses on harvestman assemblages. The main types of managed habitats (forest plantations and secondary grasslands), together with natural forests, non-planted young forests, shrublands and habitat boundaries were continuously sampled with seven pitfall traps during 1 year at 28 sites. The harvestman assemblages were classified using six different analyses, and indicator species were identified. The spatial patterns of harvestman diversity in low areas differed from those of mountain areas, although they have 15 species in common. Remarkably, higher average harvestman species richness was measured in low Cantabrian areas than in mountain areas. Shrublands and boundaries were the most species-rich habitats. Forested areas were the poorest in abundance, and were not the habitats richest in harvestman species, though they had higher average richness than mountain Cantabrian forests. Grasslands had a unique harvestman composition with significant extraordinary abundances, in particular of Homalenotus quadridentatus (indicator species of this habitat) and H. laranderas. Interestingly, H. laranderas, Paroligolophus agrestis and Ischyropsalis hispanica, indicator species of some open habitats in low Cantabrian areas, have recently been shown to be indicators of shady forests in mountain Cantabrian territories.

Diffusion in hot subdwarf progenitors from the common envelope channel

Abstract Diffusion of elements in the atmosphere of a star can drastically affect its surface composition, sometimes leading to unusual mixtures. These chemically peculiar stars can be identified fromthe presence of unusual lines in their spectra. Some hot subdwarf stars show extraordinary abundances of elements such as lead, zirconium and strontium, while the abundance of helium ranges from practically zero to almost 100 percent across the hot subdwarf population. A sequence of extreme horizontal branch star models was generated by producing a number of post-common envelope objects from red giants. The evolution of these subdwarf progenitors was computed with the MESA stellar evolution code from immediately after envelope ejection right up to the ignition of helium in the core. Envelope abundances were calculated at the zero age horizontal branch for models both with and without the presence of diffusion. A small number of simulations also looked at the effects on radiative levitation of these abundances, to test how well diffusion physics is able to reproduce observational data.

Post-fossilization processes and their implications for understanding Ediacaran macrofossil assemblages

Abstract Fossil assemblages from Newfoundland's Avalon Peninsula preserve diverse examples of the enigmatic Ediacaran macrobiota, offering some of the earliest evidence for large and complex multicellular life. These fossils are exposed on extensive coastal bedding planes in extraordinary abundances, permitting palaeoecological studies based on census data from spatially extensive palaeocommunities. Such studies have been used to constrain the reproductive strategy and phylogenetic placement of Ediacaran organisms. Geological mapping and stratigraphic correlation in the Mistaken Point Ecological Reserve reveal that some fossil-bearing surfaces can be tracked over distances of several kilometres. These laterally extensive surfaces reveal that the modern processes by which the sediment overlying a fossil surface is removed may impose important controls on the observed composition of fossil assemblages. Weathering and erosion – along with factors associated with tectonics, metamorphism and discovery – are here grouped as ‘post-fossilization processes’ and introduce biases that are often not explicitly accounted for in palaeoecological studies. Specifically, post-fossilization processes may differentially influence the preservational fidelity of individual specimens on a given surface and generate features that could be mistaken for original morphological characters. We therefore recommend that post-fossilization processes must be considered when undertaking palaeoecological studies in Ediacaran successions in Newfoundland and, potentially, elsewhere.

Interplay of enzymatic and structural functions of CaMKII in long-term potentiation.

Since the discovery of long-term potentiation (LTP) about a half-century ago, Ca2+ /CaM-dependent protein kinase II (CaMKII) has been one of the most extensively studied components of the molecular machinery that regulate plasticity. This unique dodecameric kinase complex plays pivotal roles in LTP by phosphorylating substrates through elaborate regulatory mechanisms, and is known to be both necessary and sufficient for LTP. In addition to acting as a kinase, CaMKII has been postulated to have structural roles because of its extraordinary abundance and diverse interacting partners. It now is becoming clear that these two functions of CaMKII cooperate closely for the induction of both functional and structural synaptic plasticity of dendritic spines. Because of its extraordinary abundance within neuronal cells, calmodulin kinase CaMKII has been believed to act as a structural protein as well as an enzyme during synaptic plasticity. In this review, we summarized studies in CaMKII field and provide an insight into how enzymatic and structural functions of CaMKII cooperate with each other for long-term potentiation (LTP) in neurons. This article is part of a mini review series: "Synaptic Function and Dysfunction in Brain Diseases".

Correlation between local structures and glass forming ability of liquid MgxZn1 − x alloys

The liquid structures of a series of Mg-Zn alloys have been investigated in the present work by means of ab initio molecular dynamic simulation. Strong chemical short-range orders are observed for the eutectic alloy Mg70Zn30, i.e. the best glass former of Mg-Zn binary alloys, which is consistent with the experiment results. The pair analysis indicates the extraordinary abundance of icosahedral clusters in this eutectic liquid alloy. Furthermore, the self-diffusion coefficients of Mg and Zn reach minimum for the Mg70Zn30 alloy. The entire results offer an interpretation for the better glass forming ability of the Mg70Zn30 alloy.

Immune responses to endogenous retroelements: taking the bad with the good.

The ultimate form of parasitism and evasion of host immunity is for the parasite genome to enter the germ line of the host species. Retroviruses have invaded the host germ line on the grandest scale, and this is evident in the extraordinary abundance of endogenous retroelements in the genome of all vertebrate species that have been studied. Many of these endogenous retroelements have retained viral characteristics; some also the capacity to replicate and, consequently, the potential to trigger host innate and adaptive immune responses. However, although retroelements are mainly recognized for their pathogenic potential, recent evidence suggests that this 'enemy within' may also have beneficial roles in tuning host immune reactivity. In this Review, we discuss how the immune system recognizes and is shaped by endogenous retroelements.