Extractable Soil Organic Matter Research Articles

Development of a vehicle-mounted soil organic matter detection system based on near-infrared spectroscopy and image information fusion

In the practical application of farmland, the soil organic matter prediction model established by the traditional near-infrared (NIR) spectroscopy is affected by factors such as soil texture, which leads to a serious decline in the accuracy of the model. To improve the robustness and prediction accuracy of the model, a prediction model based on NIR spectroscopy and image fusion is proposed. A 1D-CNN organic matter prediction model (based on NIR spectroscopy) was established using eight characteristic wavelengths of extracted soil organic matter (932 nm, 999 nm, 1083 nm, 1191 nm, 1316 nm, 1356 nm, 1583 nm, and 1626 nm) as spectral information. A 2D -CNN organic matter prediction model was established using soil RGB images as information. Based on the idea of model weight fusion, 1D-CNN and 2D-CNN models are fused. When using small convolutional kernels (three-layer convolutional kernel size: 3*3, 1*1, 1*1) and 1D-CNN:2D-CNN = 6:4, the model has the highest prediction accuracy (R 2 = 0.872). The optimal fusion model was embedded into the inspection system. The final laboratory and field testing results are as follows: under laboratory conditions, the detection accuracy R 2 of the 1D CNN prediction model, 2D-CNN prediction model, and fusion model are 0.838, 0.781, and 0.869, respectively. The root mean square error is 3.005, 3.546, and 2.678, respectively. The above experimental data indicates that the R 2 of the fused model is more accurate compared to the model established with a single information. In the field test, the R 2 detection accuracy of 1D-CNN prediction model, 2D-CNN prediction model and fusion model is 0.809, 0.731 and 0.835, respectively. The root mean square errors are 3.466, 3.828 and 2.973, respectively. The results show that the fusion model improves the prediction accuracy and model robustness, and the detection system can meet the needs of soil nutrient detection in farmland.

Importance of inner-sphere P-O-Fe bonds in natural and synthetic mineral-organic associations

Sorption of organic molecules on mineral surfaces can occur through several binding mechanisms of varying strength. Here, we investigated the importance of inner-sphere P-O-Fe bonds in synthetic and natural mineral-organic associations. Natural organic matter such as water extracted soil organic matter (WESOM) and extracellular polymeric substances (EPS) from liquid bacterial cultures were adsorbed to goethite and examined by FTIR spectroscopy and P K-edge NEXAFS spectroscopy. Natural particles from a Bg soil horizon (Gleysol) were subjected to X-ray fluorescence (XRF) mapping, NanoSIMS imaging, and NEXAFS spectro-microscopy at the P K-edge. Inner-sphere P-O-Fe bonds were identified for both, adsorbed EPS extracts and adsorbed WESOMs. Characteristic infrared peaks for P-O-Fe stretching vibrations are present but cannot unambiguously be interpreted due to possible interferences with mono- and polysaccharides. For the Bg horizon, P was only found on Fe oxides, covering the entire surface at different concentrations, but not on clay minerals. Linear combination fitting of NEXAFS spectra indicates that this adsorbed P is mainly a mixture of orthophosphate and organic P compounds. By combining atomic force microscopy (AFM) images with STXM-generated C and Fe distribution maps, we show that the Fe oxide surfaces were fully coated with organic matter. In contrast, clay minerals revealed a much lower C signal. The C NEXAFS spectra taken on the Fe oxides had a substantial contribution of carboxylic C, aliphatic C, and O-alkyl C, which is a composition clearly different from pure adsorbed EPS or aromatic-rich lignin-derived compounds. Our data show that inner-sphere P-O-Fe bonds are important for the association of Fe oxides with soil organic matter. In the Bg horizon, carboxyl groups and orthophosphate compete with the organic P compounds for adsorption sites.

Disentangling drivers of soil organic carbon storage in deltaic rice paddies from the Ebro Delta

Paddy farming can potentially sequester carbon. However, agricultural practices may alter the stability of the soil organic carbon (SOC) stocks and thereby increase carbon mobilization in the topsoil and subsoil. We hypothesize that both agricultural practices and soil physical–chemical characteristics, mostly those related to the type of the parental soil where the paddy is established, play an important role in SOC stabilization and sequestration. To test this, we profiled the biochemical characteristics of soil organic matter (SOM) and the SOC concentrations in sediment cores of 10 rice fields from the Ebro Delta (Northeast Spain) representing former reclaimed habitats (i.e., peatlands, meadows, coastal lagoons, riverbanks and salt marshes). The effects of physical–chemical soil properties on SOM content were tested with Generalized Linear Models and the best models were selected using information-theoretic approach. The optical characteristics of SOM extracts were analyzed by UV–Visible and fluorescence spectrophotometry, and six fluorescence components were identified by Parallel Factor Analysis (PARAFAC). Higher clay and lower sand content explained the greater SOM presence in topsoil while higher clay content and salinity prevailed as the main explanatory factors in the subsoil showing a positive correlation with SOM content. The results revealed a correlated gradient of SOM quantity and quality where in SOM-rich soils both the aromaticity and the humification degree were higher while in soils with lower SOM content it was fresher and more microbially derived. Current agricultural practices favored SOM humification in the topsoil while the variability in SOM quality in subsoil is attributed to the combination of soil physical–chemical characteristics (pH, conductivity and clay content) and the previous habitat’s influence. This study represents a comprehensive empirical analysis on the carbon stocks in rice fields and the identification of soil physical–chemical factors, related to prior land uses, favoring soil carbon accumulation. These results may have major implications in decision-making process for climate change mitigation in vulnerable Mediterranean coastal paddies.

Sequential extraction of labile and recalcitrant fractions of soil organic matter: A case study focusing on antimony (Sb) in humic acids, fulvic acids and humin fractions of long-term aged contaminated soils

Soil organic matter (SOM) plays a key role in environmental chemistry of macro and micro nutrients as well as heavy metal (loids). In this research, a modified sequential extraction scheme was used to isolate labile and recalcitrant SOM from organic rich soils after 18 months of ageing with antimony. Humic substances were extracted with a mixture of 0.5 M sodium hydroxide +0.1 M sodium pyrophosphate solution from soils. Then soils deprived of humic substances were sequentially subjected to extraction with glycerol, citric acid, pre-treated with acid and extracted with boiling alkali mixture. The humic acids (HA) and fulvic acids (FA) of isolated SOM fractions were separated and HAs been characterized using FTIR, 1H NMR, and UV-VIS. Acid-alkali treatment of the most recalcitrant SOM fraction (A1-ROM) led to the extraction of sparingly soluble, highly aromatic compound with considerable amounts of N (44% of the extractable N), possibly due to the breakdown of bounds between aromatic rings and amine functional groups. Nevertheless, the highest content of C and TOC was associated with the glycerol extractable SOM. Substantial amounts of Fe and Al were extracted with glycerol, resulting in a dramatic rise of Sb in SOM extracts. The largest increase (60%) in Sb concentrations was observed after the removal of Fe with citric acid. The humic substances (HS) were responsible for 63% of extractable Sb, whereas even after exhaustive alkali extractions 22% of the total Sb remained in the residual humin fraction. Within the HS fraction, 95% of antimony was associated with the low molecular weight FAs. Antimony concentrations in organic fractions correlated significantly with TOC and N contents, possibly due to the role of amine functional groups in Sb complexation. The results of this research highlight the importance of Fe–Al-SOM bridging and humin fraction in sequestration of Sb in recalcitrant SOM pools.

Use of untargeted metabolomics to analyse changes in extractable soil organic matter in response to long-term fertilisation

Use of untargeted metabolomics to analyse changes in extractable soil organic matter in response to long-term fertilisation

Phosphorus species in sequentially extracted soil organic matter fractions

The majority of organic P (Porg) in soil is considered to be part of soil organic matter (SOM) associations, but its chemical nature is largely ‘unresolved’. In this study, we investigated the Porg composition in different SOM fractions of a Gleysol soil using the Humeomics sequential chemical fractionation (SCF) procedure combined with nuclear magnetic resonance (NMR) spectroscopy.In summary, SCF procedure with subsequent NaOH-EDTA extraction of the soil residue extracted a total of 1769 mgP/kgsoil compared to 1682 mgP/kgsoil of a single-step NaOH-EDTA extraction. Approximately 38 % of the extracted Porg was present in the form of the unresolved Porg pool, which was represented by one or two underlying broad signals in the phosphomonoester region of solution 31P NMR spectra. The SCF revealed that phosphomonoesters were recovered in each fraction: 47 % of the unresolved phosphomonoesters were associated with the SOM fraction released by breaking ester bonds (40 %) and ether bonds (7 %), whereas about 30 % of this unresolved Porg pool appeared in the SOM fraction closely associated with the soil mineral phase. Furthermore, the extractability of inositol phosphates (IP) was increased from 312 mgP/kgsoil to 534 mgP/kgsoil (factor 1.7) using the SCF procedure compared to a single-step NaOH-EDTA extraction. Previous studies have reported the presence of IP in molecular size fractions greater than 10 kDa. Our findings on the removal of IP with the fractionation of the SOM could explain the presence of IP in these large associations.We demonstrate that major pools of Porg are closely associated with SOM structures, comprising a diverse array of chemical species and bonding types. These results forward our understanding of Porg stabilisation, P transformation, and P cycling in terrestrial ecosystems towards an association point of view.

Application of chelate GLDA for remediating Cd-contaminated farmlands using Tagetes patula L.

In the present study, via a 180-day field trial, the indicators of soil total cadmium, DTPA-Cd, organic matter, and plant cadmium extraction were tested after the application of chelate tetrasodium glutamate diacetate (GLDA) to investigate the potential of GLDA combined with Tagetes patula L. to remediate cadmium-contaminated soil. To do so, five GLDA treatments (e.g., 0, 292.5, 585, 1170, and 2340kg hm-2) were practiced. For each treatment, the total GLDA was divided into two applications with 15-day intervals (0.25, 0.47, and 0.61mg·kg-1) under T. patula plantation. Compared with the control, our results showed that GLDA application significantly increased the biomass of aerial parts of T. patula by 21.9% (p < 0.05). Likewise, Cd content in aboveground and underground parts of T. patula increased by 94.7% and 60.5%, respectively, compared with the control (p < 0.05). GLDA application caused significant increases in Cd accumulations in cell soluble fraction and cell wall by 290% and 123%, respectively (p < 0.05); soil pH and DTPA-Cd content increased with the increase of total application of GLDA. Co-application of GLDA (2340kg hm-2) and T. patula reduced the total soil Cd content by 12.87% compared with the soil background. Altogether, our findings conclude on the efficacy of GLDA application for the remediation of Cd-contaminated farmlands under T. patula cultivation.

Extraction methods for untargeted metabolomics influence enzymatic activity in diverse soils

Soil organic matter (SOM) is the largest carbon pool in terrestrial ecosystems and underpins the health and productivity of soil. Accurate characterization of its chemical composition will improve our understanding of biotic and abiotic processes regulating its stabilization. Our purpose in this study was to estimate the loss of SOM by microbial and exoenzymatic activity that might occur when soil is extracted for analysis of representative low molecular weight mass features using untargeted metabolomics. Two mined clays (kaolinite, montmorillonite) and three diverse soils (varying in texture, specific surface area and cation exchange capacity) were used to assess the extraction efficiency and loss of three enzymatic activity indicators (2,6-dichloroindophenol sodium salt hydrate [DCIP], 4-methylumbelliferyl phosphate [MUBph] and 3,4-dihydroxy-L-phenylalanine [LDOPA]) during extraction with two different solvents (water and methanol). Losses of the indicators were attributed to extraction method (ultrasonication, shaking, or shaking following chloroform fumigation), physical properties associated with the soil/clay type, and microbial activity. Soil/clay type strongly influenced indicator recovery and hence, SOM recovery. Choice of extraction method strongly influenced the composition and recovery of representative SOM mass features, while the choice of solvent determined whether the soil type or extraction method had a greater influence of compositional differences in the SOM mass features extracted. Extraction following chloroform fumigation had the greatest loss of the indicators, due to enzymatic activity and/or adsorption onto the soil matrix. Minimal variation in composition and loss of SOM mass features occurred during extraction by shaking for the soils tested; we therefore recommend it as the method of choice for untargeted SOM extraction studies.

Revisit soil organic matter

<p indent="0mm">The accurate and comprehensive understanding of the molecular composition, source, and stabilization mechanism of soil organic matter (SOM) is vital for soil management and the preservation of organic carbon. Currently, a series of key scientific issues concerning the formation and stabilization of SOM is highly contentious. This review summarized the advances in the sources and molecular structure of SOM, and presented a systematic analysis of the different views, conflicts, and problems concerning soil humic substances in the past decades. The traditional view of soil science believes that SOMs are mainly composed of humic substances which are macromolecular compounds and are derived from plant and animal residues through a series of mineralization and humification processes. Soil enzymes and minerals, including phenol oxidase, laccase, peroxidase, iron oxide, manganese oxide, promote the polymerization of organic molecules through additive nucleophilic reactions and free radical catalyzation. ¹³C-NMR and FT-ICR-MS analyses supported the existence of humic substances in soils based on the structure and the molecular composition of SOM. However, with the application of biomarker analysis, high-resolution mass spectrometry, spatial resolution spectroscopy, and other advanced techniques, there is an emergence of new perspectives on the source and the structure of SOM. HPLC-SEC showed the average molecular weight of Aldrich humic acid was significantly smaller than previously thought and the aggregation of humic substances was affected by acetic acid, pH and ionic strength. These evidences suggest that humic substances are aggregates of small organic compounds with a molecular weight of hundreds to thousands of Daltons, rather than macromolecules of tens to hundreds of thousands of Daltons. Furthermore, <italic>in situ</italic> observation of soil particles by STXM revealed significant heterogeneity of SOM at <sc>50 nm</sc> spatial resolution. In terms of the origin of SOM, model calculations and biomarker analysis have indicated that microbial necromass is the major constituent of SOM which accounts for ~33%–62% of SOM in different ecosystems. Collectively, microbial residues may contribute predominantly to the SOM pool and traditional concept “humification” may not occur in the soil. These new findings are contrary to the traditional theory of soil chemistry and soil biochemistry and subvert our understanding of SOM. Therefore, it is imperative to perform further in-depth studies to fill the knowledge gaps regarding the sources, formation processes, and molecular structures of humus. However, further intensive investigations on SOM are restricted by the lack of efficient and reliable extraction procedures. In addition, the conversion coefficients from biomarker to necromass are not accurate and mass spectrometry could not provide a comprehensive analysis on the whole organic molecules in the soil. The studies on enzymatic reactions and microbial synthesis were mainly performed in simple suspension systems, which could not simulate the complex soil matrix. Consequently, future studies are needed to improve the efficiency and accuracy of the extraction and analysis of SOM and to develop a real-time study platform for the interfacial reactions among minerals, organic matters and microorganisms. Meanwhile, <italic>in situ</italic> characterization techniques and modeling should be employed and combined to clarify the sources and the underlying mechanisms of SOM stabilization at molecular level.

Adsorption of Fulvic Acid and Water Extractable Soil Organic Matter on Kaolinite and Muscovite

The interaction of organic matter with mineral components of the solid phase of soils is the most important process that regulates the cycle and balance of carbon in the biosphere. The adsorption of humic acids on minerals is accompanied by their fractionation in size, composition, and amphiphilicity, thus decreasing their heterogeneity. Despite a strong interest in studying the regularities and mechanisms of the interaction between natural organic matter and layered aluminosilicates, it is necessary to take into account the natural diversity of soil organic matter, adsorption conditions, and mineral composition. This study was designed to investigate the adsorption regularities of fulvic acid (FA) and water-extractable organic matter (WEOM) isolated from horizon H of peaty-podzolic-gleyic soil on kaolinite and muscovite. Sorbates and sorbents were examined by the following methods: high-pressure size exclusion chromatography (HPSEC), high-performance liquid chromatography (HPLC), and potentiometric titration. The specific surface areas of the sorbents were determined by the sorption of N2 molecules. We found that hydrophobic components of FA and WEOM are mainly adsorbed on mineral surfaces. The adsorption of FA and WEOM on kaolinite and muscovite is followed by decreased hydrophobicity of organic matter and decreased heterogeneity of its amphiphilic properties in an equilibrium solution. At pH levels around 6, sorption of organic matter from FA solution containing 19% and 81% hydrophilic and hydrophobic components, respectively, onto kaolinite and muscovite occurs mainly due to hydrophobic components. Hydrophobic interactions on siloxane surfaces are the main mechanism to fix FA on both minerals. Kaolinite adsorbs slightly more organic carbon per unit area than muscovite. The adsorption of WEOM from a solution with 41% hydrophilic and 59% hydrophobic components results not only from hydrophobic and hydrophilic components but also from hydrophobic and electrostatic interactions and depends on pH. The most hydrophobic fractions of organic matter are adsorbed from the hydrophobic components on the surface of both minerals. Under conditions of the performed experiments at pH &lt; 5, more WEOM is adsorbed on muscovite than on kaolinite.

Environmental impact assessment of Egyptian Damietta governorate soils contamination with cadmium

Soil parental materials and anthropogenic activities are the sources of increasing Cd in soils and enrichment in edible parts of plants and creating hazards to animals and human. Thus, it is an important issue to estimate the levels of Cd in soils; straw and grains of rice and wheat plants grown in the soils contaminate with Cd and evaluates human health risk. In surface soil, total Cd (899±497µg kg-1) and Diethylene Triamine Penta Acetate (DTPA) extractable Cd (16.41±13.83µg kg-1) slightly higher by 1.02±0.20 and 1.31±0.45 folds than the subsurface layers, respectively. The DTPA extractable Cd concentration is significantly increased linearly with increasing total soil Cd (r=0.90). Positive significant correlation was found between soils DTPA extractable Cd and soil organic matter (OM) content (r=0.95), while significant negative correlation for both CaCO3 content (r=-0.92) and pH (r=-0.94). In rice Cd concentrations of straw (374±156µg kg-1) and grains (35±16µg kg-1) are significantly correlated with total soil Cd (r=0.89, r=0.86) and DTPA extractable Cd (r=0.84, r=0.74), respectively. Whereas, rice grains Cd is increased with increasing straw Cd (r=0.98). Wheat Cd concentrations of straw (194±71µg kg-1) and grains (18±13µg kg-1) are significantly correlated with total soil Cd (r=0.90, r=0.96) and DTPA extractable Cd (r = 0.91, r=0.95), respectively. Wheat grains Cd is increased with increasing straw Cd (r=0.95). The Cd Transfer factors (TF) as an average is higher in rice grains (0.04±0.014) than wheat grains (0.021±0.016). However, Cd concentrations in the wheat and rice grains are lower than the both EU and WHO/FAO permissible limits (0.24mg kg-1 and 0.4mg kg-1 dry wt., respectively) and so far no potential human health risk is concluded yet.

Arbuscular mycorrhizal fungi reverse selenium stress in Zea mays seedlings by improving plant and soil characteristics

Selenium (Se) is a beneficial trace element for certain animals including humans, while remaining controversial for plants. High Se concentration in soil is toxic to plants especially at seedling stage of the plants. Although, arbuscular mycorrhizal fungi (AMF) are important for plant stress resistance; but the mechanisms by which AMF alleviate Se stress in crop seedlings are unclear. Therefore, we investigated the potential strategies of AMF symbiosis to alleviate Se stress in maize (Zea mays) from plants and soil perspectives. Results showed that Se stress (Se application level > 5 mg kg−1) significantly inhibited leaf area, shoot dry weight, and root dry weight of maize (P < 0.05). In contrast, AM symbiosis significantly improved root morphology, increased nitrogen and phosphorus nutrition, promoted shoot growth, inhibited the transport of Se from soil/roots to shoots, and then diluted the concentration of Se in shoots (32.65–52.80%). In general, the response of maize growth to AMF was mainly observed in shoots rather than roots. In addition, AMF inoculation significantly increased the easily extractable glomalin-related soil protein and organic matter contents and decreased the availability of soil Se to the plant. Principal component analysis showed that AMF promoted growth and nutrition uptake of maize was the most dominant effect of Se stress alleviation, followed by the decrease of soil Se availability, limiting Se transport from soil/roots to shoots. Moreover, the expression of Se uptake-related ion transporter genes (ZmPht2, ZmNIP2;1, and ZmSultr1;3) in maize roots were down-regulated upon AM symbiosis which resultantly inhibited the uptake and transport of Se from soil to maize roots. Thus, AMF could impede Se stress in maize seedlings by improving plant and soil characteristics.

Linking Remotely Sensed Carbon and Water Use Efficiencies with In Situ Soil Properties

The capacity of terrestrial ecosystems to sequester carbon dioxide (CO2) from the atmosphere is expected to be altered by climate change and CO2 fertilization, but this projection is limited by our understanding of how the soil system interacts with plants. Understanding the soil–vegetation interactions is essential to assess the magnitude and response of terrestrial ecosystems to the changing climate. Here, we used soil profile and satellite data to explore the role that soil properties play in regulating water and carbon use by plants. Data obtained for 19 terrestrial ecosystem sites in a warm temperate and humid climate were used to investigate the relationship between remotely sensed data and soil physical and chemical properties. Classification and regression tree results showed that in situ soil carbon isotope (δ13C), and soil order were significant predictors (r2 = 0.39, mean absolute error (MAE) = 0 of 0.175 gC/KgH2O) of remotely sensed water use efficiency (WUE) based on the Moderate Resolution Imaging Spectroradiometer (MODIS). Soil extractable calcium (Ca), and land cover type were significant predictors of remotely sensed carbon use efficiency (CUE) based on MODIS and Landsat data-(r2 = 0.64–0.78, MAE = 0.04–0.06). We used gross primary productivity (GPP) derived from solar-induced fluorescence (SIF) data, based on the Orbiting Carbon Observatory-2 (OCO-2), to calculate WUE and CUE (referred to as WUESIF and CUESIF, respectively) for our study sites. The regression tree analysis revealed that soil organic matter and soil extractable magnesium (Mg), δ13C, and soil silt content were the important predictors of both WUESIF (r2 = 0.19, MAE = 0.64 gC/KgH2O) and CUESIF (r2 = 0.45, MAE = 0.1), respectively. Our results revealed the importance of soil extractable Ca, soil carbon (S13C is a facet of soil carbon content), and soil organic matter predicting CUE and WUE. Insights gained from this study highlighted the importance of biotic and abiotic factors regulating plant and soil interactions. These types of data are timely and critical for accurate predictions of how terrestrial ecosystems respond to climate change.

The molecular composition of extractable soil microbial compounds and their contribution to soil organic matter vary with soil depth and tree species

Recent findings on soil organic matter (SOM) revealed that soil microorganisms are not only crucial for SOM formation through plant litter degradation but soil microbial biomass (SMB) may also directly contribute to SOM and its composition. However, the role and interactions of litter quality, microbial turnover and composition of SMB and SOM remain unclear. Hence, soil profiles (organic forest floor and mineral soil layers) at a recultivated and afforested post-mining site were investigated for the influence of litter quality from different tree species (Fagus sylvatica, Pseudotsuga menziesii, Pinus nigra) and soil depth – representing different degrees of organic matter (OM) turnover – on the molecular composition of chloroform fumigation extracted SMB-derived compounds in comparison with easily extractable (non-fumigated) SOM-derived compounds. The SMB extracts were analyzed for microbial biomass carbon (MBC), nitrogen (MBN) and phosphorus (MBP). The molecular composition of SMB and SOM compounds were determined by electrospray ionization Fourier transformation ion cyclotron resonance mass spectrometry (ESI-FT-ICR-MS) complemented by the determination of nine monosaccharides representing microbial or plant origin.Van Krevelen diagrams obtained from the ESI-FT-ICR mass spectra revealed the substantial contribution of microbial-derived compounds to extractable SOM that further increased with soil depth. Analysis of the easily extractable monosaccharides implied that >99% were of microbial origin. Microbial sugars as well as MBC, MBN and MBP explained best depth-related variations of extractable SMB compounds indicating that supply and availability of C-rich OM drive these parameters. Furthermore, the contribution of microbial sugar C to MBC increased with depth, suggesting that recycling of carbohydrates is an adaptation strategy of microorganisms in C-limited environments. The supply of tree species-specific substrates resulted in different chemical composition of SMB with largest differences between deciduous and coniferous stands and vice versa, microorganisms contributed to SOM resulting in large similarity in the composition of extractable SOM and SMB.

Proteinaceous and humic fluorescent components in chloroform-fumigated soil extracts: implication for microbial biomass estimation

Excitation–emission matrix fluorescence spectroscopy coupled with parallel factor analysis was employed for characterisation of chloroform fumigation-extractable soil organic matter, commonly used for soil microbial biomass estimation. This allowed, for the first time, to discriminate between humic-like (i.e. noncellular) and microbial protein-like, fumigation-extractable components, challenging the presumption that only microbial constituents contribute to the fumigation flush of C serving as a proxy measure for soil microbial C. A Vertisol was assayed under increasing K2SO4 extractant molarity (0–0.5 M), which allowed increasing organic matter extractability levels and the association of these increases with relative contributions from microbial versus humic sources. Expectedly, protein-like fluorescence was found negligible in the nonfumigated soil extracts while comprising the bulk of fluorescence of the material becoming K2SO4-extractable due to fumigation. Nevertheless, fumigation also led to an increase in extractable concentrations of humic-like components, showing that not only microbial constituents were fumigation-extractable. Humic-like fluorescence in the fumigation flush generally increased with decreasing K2SO4 molarity, being minimal at 0.25 M K2SO4. Considering also the preference for maximal flush of extractable soil organic matter, indicative of maximal fumigation efficiency, the use of 0.25 M K2SO4 seems preferable for extraction of microbial biomass with minimal interference from humic substances, for the investigated Vertisol. The presented working framework for assessment and alleviation of interference from humic substances in microbial biomass estimation is recommended to be applied specifically to any soil type before routine monitoring.

Effect of Soil Organic Matters in Dredged Soils to Utilization of their Mixtures Made with a Steel Slag.

Dredged soils have been used as construction materials by alkaline activation with steel slag (steel slag-dredged soil mixtures) at harbors. Such mixtures develop strength chiefly by calcium silicate hydrate (C-S-H) formation by the pozzolanic reaction. However, the strength of such mixtures is unpredictable, and in some cases, mixtures have been too soft for the intended engineering application. An identification of strength development indicators would accelerate evaluation processes for strength development to facilitate and promote the utilization of such materials. This paper focuses on the relationship between the characteristics of soil organic matters in dredged soils and the strength development of the mixtures by a comparison of eight dredged soils collected from eight different Japanese harbors. The characteristics of the soil organic matters were identified to determine as indicators of mixtures with weak strength development, i.e., enriched sulfur content in extracted soil organic matter (humic acid) fraction, and the N/C ratio of humic acid similar to land humic acid standards. Increases in the validated fraction of dredged soils and steel slag by replacing fractions disadvantageous to construction resources would contribute to reduce waste production, which would lower the environmental impact of the use, aiming to achieve sustainable utilization of such materials.

Reducing Reagents Induce Molecular Artifacts in the Extraction of Soil Organic Matter

Organic matter (OM) often co-exists with iron oxyhydroxides in soils to form iron-oxyhydroxide-associated OM. Reducing reagents, such as dithionite and hydroxylamine, have been widely used to selec...

High-pH and anoxic conditions during soil organic matter extraction increases its electron-exchange capacity and ability to stimulate microbial Fe(III) reduction by electron shuttling

Abstract. Soil organic matter (SOM) is redox-active, can be microbially reduced, and transfers electrons in an abiotic reaction to Fe(III) minerals, thus serving as an electron shuttle. The standard procedure to isolate organic matter (OM) from soil involves the use of alkaline and acidic solutions and the separation of humic acids (HAs) and fulvic acids (FAs). This process potentially leads to unwanted changes in SOM chemical and redox properties. To determine the effects of extraction conditions on the redox and electron-shuttling properties of SOM extracts, we prepared HA, FA, and water-extractable organic matter (OM) extracts, applying either a combination of 0.1 M NaOH and 6 M HCl or ultrapure water (pH 7), from soil samples collected from the subsoil (0–15 cm, A horizon, pH 6.5–6.8) in Schönbuch forest, Baden-Württemberg, Germany. Both chemical extractions (NaOH∕HCl) and water extractions were done in separate experiments under either oxic or anoxic conditions. Furthermore, we applied the NaOH∕HCl treatment to a subsample of the water-extractable OM to separate HA and FA from the water-extractable OM. When comparing the amount of carbon extracted from soil by different extraction methods, we found that FA and HA chemically extracted from the soil can make up to 34 %–40 % of the soil organic carbon pool while the water-extractable OM only represents 0.41 %–2.74 % of the total soil organic carbon. The higher extraction efficiency of the chemical extraction is probably due to the deprotonation of carboxyl and phenol functional groups under high pH. Anoxic extraction conditions also led to more extracted carbon. For water-extractable OM, 7 times more C was extracted under anoxic conditions compared to oxic conditions. This difference was probably due to the occurrence of microbial reduction and dissolution of Fe(III) minerals in the soil during the anoxic water extraction and thus the concomitant release of Fe(III) mineral-bound organic matter. To compare the redox activity of different SOM extracts, the electron-exchange capacity (EEC) of all extracted HA, FA, and water-extractable OM was analyzed and our results showed that, under anoxic extraction conditions, the HA chemically isolated from the water-extractable OM had 2 times higher EEC values compare to the water-extractable OM itself, suggesting the potential formation of redox-active aromatic functional groups during the extraction with NaOH under anoxic conditions by condensation reactions between amino acids, aldehydes, and hydroxyl- and catechol-containing molecules. We also performed a microbial Fe(III) reduction experiment with all extracts and found that higher EEC of extracts in turn resulted in a higher stimulation of microbial Fe(III) mineral reduction by electron shuttling, i.e., faster initial Fe(III) reduction rates, and in most cases also in higher reduction extents. Our findings suggest that OM extracted with water at neutral pH should be used to better reflect environmental SOM redox processes in lab experiments and that potential artefacts of the chemical extraction method and anoxic extraction condition need to be considered when evaluating and comparing abiotic and microbial SOM redox processes.

The influence of soil management on soil health: An on-farm study in southern Sweden

Soil health reflects the capacity of a soil to provide ecosystem services. A major challenge of soil management is to support agricultural productivity without jeopardizing other ecosystem services. However, there is relatively little knowledge on how soil management affects soil health in real farm settings. This study investigated the impact of soil management on soil health indicators of 20 farm fields in southern Sweden. In addition, we collected samples from an adjacent unmanaged soil at each field, representing the potential soil health at each site. Soil health was quantified by measuring soil physical and biological indicators: wet aggregate stability, autoclaved-citrate extractable soil protein, organic matter, active carbon and heterotrophic soil respiration. Soil texture and pH were also measured. A soil management index was calculated for each field based on crop diversity, soil tillage, and application of organic amendments. Thereby, a high management index indicated a higher crop diversity, fewer tillage operations, and a higher number of organic amendments. Fields with a higher soil management index showed better soil health, with higher levels of aggregate stability, protein, active carbon, respiration, and organic matter. We found that soil management significantly affected all soil health indicators. Soil health of farm fields was generally poorer in comparison with unmanaged soil. Notably, the ratio of soil health of farm fields to unmanaged soils significantly increased with increasing soil management index. Our study shows that soil management is key for soil health, and that improved soil management comprising crop diversity, omission of tillage, and application of organic amendments promotes soil health.

Long-term effects of no tillage and Ca-amendment on the activity of soil proteases and β-glucosidase in a Mediterranean agricultural field

The depolymerization of organic proteinaceous compounds is a critical step of nitrogen (N) cycling in many agroecosystems, but our understanding of this process and the overall effect on N cycling is still limited. We have investigated long-term (11 years) impacts of tillage practices (traditional tillage, TT vs. no-tillage, NT) and Ca-amendment on the activity of soil casein protease (an enzyme degrading high-molecular weight proteinaceous compounds), N-α-benzoyl-l-argininamide protease (BAA) (targeting low-molecular weight compounds) and β-glucosidase in relation with organic matter pools and the composition of extractable soil organic matter. While the adoption of NT increased the β-glucosidase activity and the total and extractable organic C contents in the soil, only casein protease was increased by NT in the 0–5 cm soil layer. In contrast, Ca-amended plots showed a 50% higher casein protease and a lower BAA protease activity while β-glucosidase was unaffected. The decrease of BAA protease activity could be due to the reduction of easily extractable glomalin-related soil protein caused by Ca-amendment and highlights the tight relations between soil protease and glomalin. The imbalance in enzymatic activity may result in an accumulation of intermediate metabolic products (i.e. monomers and amino acids), therefore involving reduced mineral N losses and/or changes in N acquisition preferences by plants. Our results further suggest that the combination of NT and Ca-amendment application does not have synergic effects on the studied enzyme activities. In addition, the effects of agronomic practices were limited to the upper soil layers because of soil stratification caused by NT and the higher effect of Ca-amendment in topsoil. Further targeted studies are needed to elucidate the impact of agronomic practices on N losses and on the N use by soil microbes and plants.