Microbial Extracellular Enzyme Research Articles

Role of rhizospheric microbial enzymes in plant growth promotion, antagonism, and sustainable agriculture: A review

Plant growth-promoting rhizobacteria (PGPR) offer eco-friendly alternatives to chemical fertilizers, promoting sustainable agriculture by enhancing soil fertility, reducing pathogens, and aiding in stress resistance. In agriculture, they play a crucial role in plant growth promotion through the production of agroactive compounds and extracellular enzymes to promote plant health and protection against phytopathogens. In the rhizosphere, diverse microbial interactions, including those with bacteria and fungi, influence plant health by production of antimicrobial compounds. The antagonism displayed by rhizobacteria plays a crucial role in shaping microbial communities and has potential applications in developing a natural and environmentally friendly approach to pest control. The rhizospheric microbes showcase their ecological importance and potential for biotechnological applications in the context of plant-microbe interactions. The extracellular enzymes produced by rhizospheric microbes like amylases, chitinases, glucanases, cellulases, proteases, and ACC deaminase contribute to plant processes and stress response emphasizing their importance in sustainable agriculture. Moreover, this review highlights the new paradigm including artificial intelligence (AI) in sustainable horticulture and agriculture as a harmonious interaction between ecological networks for promoting soil health and microbial diversity that leads to a more robust and self-regulating agricultural system for protecting the environment in the future. Overall, this review emphasizes microbial interactions and the role of rhizospheric microbial extracellular enzymes which is crucial for developing eco-friendly approaches to enhance crop production and soil health.

Effects of Land-Use Type and Salinity on Soil Carbon Mineralization in Coastal Areas of Northern Jiangsu Province

Sea level rise due to glacier melting caused by climate warming is a major global challenge, but the mechanism of the effect of salinity on soil carbon (C) mineralization in different land types is not clear. The pathways by which salinity indirectly affects soil carbon mineralization rates need to be investigated. Whether or not the response mode is consistent among different land-use types, as well as the intrinsic links and interactions between soil microbial resource limitation, environmental stress, microbial extracellular enzyme activity, and soil carbon mineralization, remain to be demonstrated. In this paper, three typical land-use types (wetland, forest, and agroforestry) were selected, and different salinity levels (0‰, 3‰, 6‰, and 32‰) were designed to conduct a 125-day laboratory incubation experiment to determine the soil CO2 release rate, soil physicochemical properties, and soil enzyme activities, and to correlate C mineralization with biotic and abiotic factors. A correlation analysis of soil physical and chemical properties, extracellular enzyme activities, and carbon mineralization rates was conducted to investigate their intrinsic linkages, and a multiple linear regression of C mineralization at different sites was performed to explore the variability of mineralization among different site types. Structural equation models were established in the pre- and post-incubation stages to study the pathways of soil C mineralization at different incubation times, and the mechanism of mineralization was further verified by enzyme stoichiometry. The results showed that, at the end of 125 days of incubation, the 32‰ salinity addition reduced the cumulative mineralization of forest and agroforestry types by 28.41% and 34.35%, respectively, compared to the 0‰ salinity addition. Soil C mineralization in the three different land-use types was highly correlated with the active C fractions of readily oxidizable C (ROC), dissolved organic C, and microbial biomass C (MBC) in the soil, with the standardized coefficients of multivariate linear regression reaching 0.67 for MBC in the wetland and −0.843 for ROC in the forest. Under long-term salinity additions, increased salinity would reduce the microbial respiratory quotient value by inhibiting β-glucosidase activity, thus indirectly affecting the rate of CO2 release. With added salinity, the mineralization of non-saline soil was more susceptible to the inhibitory effect of salinity, whereas the mineralization of salinized soil was more controlled by soil C pools.

Fast labile carbon and litter exhaustion under no-tillage after 5-year soil warming

No-tillage continuously contribute organic matter and increase carbon sequestration in the soil. However, global warming may stimulate microbial activity and accelerate soil organic matter (SOM) decomposition, also especially in the topsoil. Understanding the responses of microbial utilization of SOM accumulated under no-tillage to higher temperatures is necessary to develop management strategies to sustain soil fertility. Determine the response of microbial extracellular enzyme activities and SOM decomposition to long-term warming by incorporation of 14C-labelled maize litter to in situ warmed soil from no-tillage and till systems. We compared decomposability of litter and SOM in soils from a 5-year in situ experiment with two tillage systems (Till and No-till) and under two temperature levels: ambient temperature and continuous soil warming (+1.6 °C at 5 cm soil depth). We hypothesized that decomposition of crop litter (14C-labeled maize) at increasing temperature (15, 21, and 27 °C for 59 days) will be more intensive in warmed soil vs. ambient and the effects should be stronger under No-till vs. Till system. As expected, soil from field warming had always higher total CO2 efflux (from 5.5 to 12%) than the non-warmed counterpart in Till and No-till systems. Five-year warming increased temperature sensitivity (Q10) of CO2 efflux for 2-folds under No-tillage vs. Till. Litter decomposition (measured as 14CO2) in No-till with warming was 7.9% greater than in No-tillage without warming. Three extracellular enzymes (β-glucosidase, chitinase, and sulfatase) had higher activities under warming in No-till but not under Till system. Our results demonstrated that the 5-year in situ warming accelerated preferential microbial utilization of labile SOM fractions in No-till notably, and from stable SOM in Till system. Consequently, warming will accelerate SOM decomposition in future and this acceleration will be especially pronounced on the labile SOM under No-tillage systems.

Fear of predators alters herbivore regulation of soil microbial community function.

Fear of predation can affect important ecosystem processes by altering the prey traits expression that, in turn, regulates the quantity and quality of nutritional inputs to soil. Here, we aimed to assist in bridging a knowledge gap in this cascading chain of events by exploring how risk of spider predation may affect grasshopper prey performances, and the activity of various microbial extracellular enzymes in the soil. Using a mesocosms field-experiment, we found that grasshoppers threatened by spider predation ate less, grew slower, and had a higher body carbon to nitrogen ratio. Herbivory increased activity of all microbial extracellular enzymes examined, likely due to higher availability of root exudates. Predation risk had no effect on C-acquiring enzymes but decreased activity of P-acquiring enzymes. We found contrasting results regarding the effect of predation on the activity of N-acetyl-glucosaminidase and leucine arylamidase N-acquiring enzymes, suggesting that predation risk may alter the composition of N-inputs to soil. Our work highlighted the importance of soil microbial enzymatic activity as a way to predict how changes in the aboveground food-web dynamics may alter key ecosystem processes like nutritional-cycling.

Food and agricultural wastes-derived biochars in combination with mineral fertilizer as sustainable soil amendments to enhance soil microbiological activity, nutrient cycling and crop production

The ever-increasing human population associated with high rate of waste generation may pose serious threats to soil ecosystem. Nevertheless, conversion of agricultural and food wastes to biochar has been shown as a beneficial approach in sustainable soil management. However, our understanding on how integration of biochar obtained from different wastes and mineral fertilizers impact soil microbiological indicators is limited. Therefore, in the present study the effects of agricultural (AB) and food waste derived (FWB) biochars with and without mineral fertilizer (MF) on crop growth and soil health indicators were compared in a pot experiment. In particular, the impacts of applied amendments on soil microbiological health indicators those related to microbial extracellular (C, N and P acquiring) enzymes, soil basal as well as different substrate induced respirations along with crop’s agronomic performance were explored. The results showed that compared to the control, the amendment with AB combined with MF enhanced the crop growth as revealed by higher above and below ground biomass accumulation. Moreover, both the biochars (FWB and AB) modified soil chemical properties (pH and electric conductivity) in the presence or absence of MF as compared to control. However, with the sole application of MF was most influential strategy to improve soil basal and arginin-induced respiration as well as most of the soil extracellular enzymes, those related to C, N and P cycling. Use of FWB resulted in enhanced urease activity. This suggested the role of MF and FWB in nutrient cycling and plant nutrition. Thus, integration of biochar and mineral fertilizers is recommended as an efficient and climate smart package for sustainable soil management and crop production.

Unveiling the Impacts of Biochar, Manure and Their Optimal Combinations on Microbiological Soil Health Indicators and Lettuce Biomass

Continuous use of chemical fertilizers has deteriorated soil health and crop productivity. Replenishing soil nutrients and microbial activity with eco-friendly soil amendments such as biochar and manure is therefore necessary to sustain soil health for crop production. However, studies are limited regarding the evaluation of biochar and poultry manure effects on soil health, attributed mainly to microbial extracellular enzymes and respiration. Therefore, the present study was designed to investigate the effects of poultry manure and biochar on soil physico-chemical and microbiological properties and lettuce biomass accumulation in a pot experiment. The pots were amended with poultry manure either alone and or in combination with low (10%) and high (20%) rates of biochar. The treatments included were; (i) control, (ii) manure alone (M), (iii) manure plus 10% biochar (M + B10, and (iv) manure plus 20% biochar (M + B20). Results revealed that soil extracellular enzymes related to C, N, and P mineralization, soil basal (BR), and substrate induced respirations (SIR) were significantly affected by applied manure and manure–biochar. However, there were large differences observed for applied amendments regarding various soil and crop parameters. Specifically, the manure combined with a high rate of biochar (M + B20) enhanced total carbon (TC) content, dehydrogenase activity (DHA), BR, and all SIRs except Arginine-IR. On the other hand, manure combined with a low rate of biochar (M + B10) resulted in enhanced lettuce aboveground dry biomass (AGB-dry). The manure treatment alone (M), however, proved to be the most influential treatment in improving soil enzymes (β-glucosidase, N-acetyl-β-d-glucosaminidase and phosphatase) involved in C, N, and P mineralization compared to the other treatments and control. Thus, it was concluded that the sole application of M and M + B20 improved both fertility and soil health, which therefore could be a promising direction for the future to enhance soil quality and crop productivity.

Experimental increases in pH and P availability exert long-term impacts on decomposition in forests

Forests are an important sink for atmospheric carbon (C), but global change phenomena threaten to alter their C storage capacity. One such global change driver is acid deposition, which can alter rates of decomposition by changing the composition of microbial communities as well as the quality of litter inputs, and ultimately nutrient cycling. The impacts of acid deposition in forests can potentially be ameliorated by increasing soil pH and addressing concurrent nutrient deficiencies. Here, we explore the capacity for experimental acid deposition reversal-induced shifts in the soil microbial community and litter quality to drive changes in rates of C cycling relative to ambient, acidic conditions. Specifically, we conducted a laboratory-based microcosm incubation experiment using soil and litter collected from a 7-year field-based acid deposition reversal experiment (through addition of Hi-Ca limestone to raise pH and triple super phosphate to increase phosphorus [P] availability) to explore the impacts of long-term acid deposition on rates of litter decomposition. We combined litter and soil from untreated (ambient, acidic) and treated (elevated pH + P) plots in a reciprocal design and incubated them in the lab, measuring rates of CO2 evolution and microbial extracellular enzyme activity during litter decomposition. Decomposition was generally depressed on soils from plots with elevated pH and P availability relative to soils from ambient conditions early in the experiment, while decomposition was greater on litter from elevated pH and P plots late in the experiment. There were no effects of treatment on cumulative CO2 evolution over the course of the experiment. Greater P content in litter from elevated pH + P plots led to reduced phosphatase activity in treated plots. We also saw greater β-glucosidase activity in elevated pH + P plots, likely due to greater nutrient availability in these plots, allowing microbes to direct foraging toward more labile forms of C. These results suggest that acid deposition reversal can depress decomposition by altering microbial community functioning, relative to ambient, acidic conditions where we saw accelerated rates of decomposition. Our results emphasize the importance of considering the potential for shifts in microbial communities under acidified conditions to alter C storage and ecosystem functioning.

Effects of Spatial Variability and Drainage on Extracellular Enzyme Activity in Coastal Freshwater Forested Wetlands of Eastern North Carolina, USA

Drainage of freshwater wetlands is common in coastal regions, although the effects on microbial extracellular enzyme activity (a key mediator of soil organic matter decomposition) in relation to spatial variability (microtopography and soil depth) are poorly understood. Soils were collected from organic (Oi, Oe, Oa) and mineral (A, AB, B) horizons from a natural and drained coastal forested wetland in North Carolina, USA. Activity of seven enzymes were measured: α-glucosidase (AG), β-glucosidase (BG), cellobiohydrolase (CBH), xylosidase (XYL), phenol oxidase (POX), peroxidase (PER) and N-acetyl glucosamide (NAG). Enzyme activity rates were normalized by soil weight, soil organic C (SOC), and microbial biomass C (MBC). Specific enzyme activity (per SOC or MBC) was more sensitive to drainage and soil depth compared to normalization by soil weight. In Oi and Oa horizons, specific enzyme activity (per MBC) (AG, BG, XYL, POX, PER) was higher in the natural compared to drained wetland but lower (AG, CBH, XYL, POX, PER, NAG) in the AB or B mineral soils. Results from this study indicate that organic soil horizons of natural freshwater wetlands contain a highly active microbial community driven by inputs of plant-derived C, while deeper soils of the drained wetland exhibit higher microbial metabolic activity, which likely plays a role in SOC storage of these systems.

Effects of different forms of nitrogen addition on microbial extracellular enzyme activity in temperate grassland soil

BackgroundNitrogen (N) deposition alters litter decomposition and soil carbon (C) sequestration by influencing the microbial community and its enzyme activity. Natural atmospheric N deposition comprises of inorganic N (IN) and organic N (ON) compounds. However, most studies have focused on IN and its effect on soil C cycling, whereas the effect of ON on microbial enzyme activity is poorly understood. Here we studied the effects of different forms of externally supplied N on soil enzyme activities related to decomposition in a temperate steppe. Ammonium nitrate was chosen as IN source, whereas urea and glycine were chosen as ON sources. Different ratios of IN to ON (Control, 10:0, 7:3, 5:5, 3:7, and 0:10) were mixed with equal total amounts of N and then used to fertilize the grassland soils for 6 years.ResultsOur results show that IN deposition inhibited lignin-degrading enzyme activity, such as phenol oxidase (POX) and peroxidase (PER), which may restrain decomposition and thus induce accumulation of recalcitrant organic C in grassland soils. By contrast, deposition of ON and mixed ON and IN enhanced most of the C-degrading enzyme activities, which may promote the organic matter decomposition in grassland soils. In addition, the β-N-acetyl-glucosaminidase (NAG) activity was remarkably stimulated by fertilization with both IN and ON, maybe because of the elevated N availability and the lack of N limitation after long-term N fertilization at the grassland site. Meanwhile, differences in soil pH, soil dissolved organic carbon (DOC), and microbial biomass partially explained the differential effects on soil enzyme activity under different forms of N treatments.ConclusionsOur results emphasize the importance of organic N deposition in controlling soil processes, which are regulated by microbial enzyme activities, and may consequently change the ecological effect of N deposition. Thus, more ON deposition may promote the decomposition of soil organic matter thus converting C sequestration in grassland soils into a C source.

Microbial extracellular enzyme activity with simulated climate change

It is critical to understand the consequences of environmental change for the microbial regulation of carbon and nutrient cycling. Specifically, understanding microbial community traits, such as extracellular enzyme activity, can help inform nutrient cycling models and address knowledge gaps. We analyzed data on extracellular enzyme activities and litter decomposition from an 18-month experiment in which microbial communities were reciprocally transplanted along a climate gradient in Southern California. Communities were from desert, scrubland, grassland, pine–oak, and subalpine ecosystems. We aimed to test how enzyme activities responded to climate change following transplantation and how those responses related to decomposition rates. We hypothesized that microbial communities would specialize on their native climate conditions, resulting in higher enzyme activities when transplanted back into their native climate. We investigated the relationship between extracellular enzyme Vmax values, substrate mass loss, and microbial biomass as well as variation in these variables across the climate gradient. We found little evidence for climate specialization, and there was rarely a reduction in enzyme functioning after microbial communities were transplanted into new climate conditions. Moreover, observed differences in decomposition were not related to changes in extracellular enzyme potential, although there were significant differences in enzyme activities and decomposition rates across sites. These results suggest that direct, physiological impacts of climate are likely to be important for enzyme-mediated decomposition, but climate specialization will not constrain the microbial response to climate change in our system.

Effects of COVID-19 lockdown on water quality, microbial extracellular enzyme activity, and sediment-P release in the Ganga River, India.

This study investigates possible improvement in water quality and ecosystem functions in the Ganga River as influenced by COVID-19 lockdown in India. A total of 132 samples were collected during summer-2020 low flow (coinciding COVID-19 lockdown) for water (sub-surface and sediment-water interface) and 132 samples separately for sediment (river bottom and land-water interface) considering 518-km main river stem including three-point sources (one releases urban sewage and the other two add metal-rich industrial effluents) and a pollution-impacted tributary. Parameters such as dissolved oxygen deficit and the concentrations of carbon, nutrients (N and P), and heavy metals were measured in water. Sediment P-release was measured in bottom sediment whereas extracellular enzymes (EE; alkaline phosphatase, FDAase, protease, and β-D-glucosidase) and CO2 emission were measured at land-water interface to evaluate changes in water quality and ecosystem functions. The data comparisons were made with preceding year (2019) measurements. Sediment-P release and the concentrations of carbon, nutrients, and heavy metals declined significantly (p<0.05) in 2020 compared to those recorded in 2019. Unlike the preceding year, we did not observe benthic hypoxia (DO <2.0 mg L−1) in 2020 even at the most polluted site. The EE activities, which declined sharply in the year 2019, showed improvement during the 2020. The stability coefficient and correlative evidences also showed a large improvement in the water quality and functional variables. Positive changes in functional attributes indicated a transient recovery when human perturbations withdrawn. The study suggests that timing the ecosystem recovery windows, as observed here, may help taking management decision to design mitigation actions for rivers to recover from anthropogenic perturbations.

Microbial functional genes influenced by short-term experimental drought across European agricultural fields

Agricultural intensification and extreme weather events can represent considerable stress to soil microorganisms and their functions by influencing the key players behind the degradation of soil organic matter. A better understanding of the diversity and abundance of microbial functional genes that predict the functional potential of soils, can link the microbial communities to their key ecosystem functions. As there are still gaps in understanding how the functional genetic diversity behind microbial extracellular enzymes is influenced by events like drought and soil carbon management, an agricultural experiment over a range of different climatic conditions and soil properties was set-up across Europe. In Sweden, Germany and Spain, fields with varying levels of soil organic carbon were subjected to a short-term experimental drought. The diversity and composition of genes encoding for carbohydrate-related extracellular enzymes were determined using a ‘captured metagenomics' technique. Functional gene diversity differed among the European regions and to a range of soil factors such as organic carbon and water content. The functional and taxonomic gene composition significantly differed between the climatic regions, while an effect of short-term drought was only observed in Germany. The results indicate that some soil microbial communities and their functional genes displayed a certain degree of resistance. The results suggest that soil microbial communities respond differently to short-term drought mainly due to regional adaptations to already dry environments and differences in their soil physicochemical properties.

Warming and Labile Substrate Addition Alter Enzyme Activities and Composition of Soil Organic Carbon

Warming can increase the efflux of carbon dioxide (CO2) from soils and can potentially feedback to climate change. In addition to warming, the input of labile carbon can enhance the microbial activity by stimulating the co-metabolism of recalcitrant soil organic matter (SOM). This is particularly true with SOM under invaded ecosystems where elevated CO2and warming may increase the biomass of invasive species resulting in higher addition of labile substrates. We hypothesized that the input of labile carbon would instigate a greater soil organic carbon (SOC) loss with warming compared to the ambient temperature. We investigated this by incubating soils collected from a native pine (Pinus taeda) forest to which labile carbon from the invasive species kudzu (Pueraria lobata) was added. We evaluated the microbial extracellular enzyme activity, molecular composition of SOC and the temperature sensitivity of soil CO2efflux under warming and labile carbon addition. After 14 months of soil incubation, the addition of labile C through kudzu extract increased the activity of β-1,4-glucosidase compared with the control. However, the activity of N-acetyl-β-D-glucosaminidase and fungal biomass (ergosterol) decreased with labile carbon addition. The activity of peroxidase increased with warming after 14 months of soil incubation. Although the carbon content of incubated soils did not vary with substrate and temperature treatments, the molecular composition of SOC indicated a general decrease in biopolymers such as cutin, suberin, long-chain fatty acids, and phytosterol with warming and an increasing trend of microbial-derived compounds with labile substrate addition. In soils that received an addition of labile C, the macro-aggregate stability was higher while the temperature sensitivity of soil C efflux was lower compared with the control. The increase in aggregate stability could enhance the physical protection of SOC from microbial decomposition potentially contributing to the observed pattern of temperature sensitivity. Our results suggest that warming could preferentially accelerate the decomposition of recalcitrant compounds while the addition of labile substrates could enhance microbial-derived compounds that are relatively resistant to further decomposition. Our study further emphasizes that global change factors such as plant invasion and climate change can differentially alter soil microbial activity and the composition of SOC.

Plant removal across an elevational gradient marginally reduces rates, substantially reduces variation in mineralization.

The loss of aboveground plant diversity alters belowground ecosystem function; yet, the mechanisms underpinning this relationship and the degree to which plant community structure and climate mediate the effects of plant species loss remain unclear. Here, we explored how plant species loss through experimental removal shaped belowground function in ecosystems characterized by different climatic regimes and edaphic properties. We measured plant community composition as well as potential carbon (C) and nitrogen (N) mineralization and microbial extracellular enzyme activity in soils collected from four unique plant removal experiments located along an elevational gradient in Colorado, USA. We found that, regardless of the identity of the removed species or the climate at each site, plant removal decreased the absolute variation in potential N mineralization rates and marginally reduced the magnitude of N mineralization rates. While plant species removal also marginally reduced C mineralization rates, C mineralization, unlike N mineralization, displayed sensitivity to the climatic and edaphic differences among sites, where C mineralization was greatest at the high elevation site that receives the most precipitation annually and contains the largest soil total C pool. Plant removal had little impact on soil enzyme activity. Removal effects were not contingent on the amount of biomass removed annually, and shifts in mineralization rates occurred despite only marginal shifts in plant community structure following plant species removal. Our results present a surprisingly simple and consistent pattern of belowground response to the loss of dominant plant species across an elevational gradient with different climatic and edaphic properties, suggesting a common response of belowground ecosystem function to plant species loss regardless of which plant species are lost or the broader climatic context.

Enhanced plant leaf P and unchanged soil P stocks after a quarter century of warming in the arctic tundra

AbstractPhosphorus (P) limits or co‐limits plant and microbial life in multiple ecosystems, including the arctic tundra. Although current global carbon (C) models focus on the coupling between soil nitrogen (N) and C, ecosystem P response to climate warming may also influence the global C cycle. Permafrost soils may see enhanced or reduced P availability under climate warming through multiple mechanisms including changing litter inputs through plant community change, changing plant–microbial dynamics, altered rates of mineralization of soil organic P through increased microbial activity, and newly exposed mineral‐bound P via deeper thaw. We investigated the effect of long‐term warming on plant leaf, multiple soil and microbial C, N, and P pools, and microbial extracellular enzyme activities, in Alaskan tundra plots underlain by permafrost. Here, we show that 25 yr of experimental summer warming increases community‐level plant leaf P through changing community composition to favour relatively P‐rich plant species. However, despite associated increases in P‐rich litter inputs, we found only a few responses in the belowground pools of P available for plant and microbial uptake, including a weak positive response for citric acid–extractable PO4 in the surface soil, a decrease in microbial biomass P, and no change in soil P (or C or N) stocks. This weak, neutral, or negative belowground P response to warming despite enhanced litter P inputs is consistent with a growing number of studies in the arctic tundra that find no long‐term response of soil C and N stocks to warming.

Large Mammalian Herbivores and the Paradox of Soil Carbon in Grazing Ecosystems: Role of Microbial Decomposers and Their Enzymes

Grazing is the dominant land use across the world, and large mammalian herbivores exert strong influence over biogeochemical cycles. Grazing ecosystems feature C-rich soils, even though herbivores consume a major fraction of plant production to reduce detrital input to soil. Yet, counter-intuitively, moderate grazing can promote net soil-C storage in many ecosystems compared to grazer-exclusion. We address this enigmatic influence of grazers on soil-C and test their indirect effect on proximate drivers of decomposition: microbial extracellular enzyme activity. We used a replicated long-term grazer-exclusion experiment to measure responses in above- and belowground plant biomass, soil-C stock, microbial biomass, labile/recalcitrant C pools and three enzymes relevant to the C-cycle: peroxidase—which initiates decomposition of recalcitrant matter, alongside beta-glucosidase and cellobiohydrolase—which act further downstream on more labile fractions. Consistent with other ecosystems, upto 12 years of herbivore exclusion did not increase soil-C in the fenced plots despite higher plant biomass and higher potential detrital C-inputs. Grazer-exclusion did not alter microbial biomass; peroxidase increased threefold and beta-glucosidase was doubled; cellobiohydrolase was unaffected. Grazer-exclusion also led to twofold increase in recalcitrant-C and in microbial respiration, but it did not influence labile-C. Structural equation models supported the hypothesis that grazing favours soil-C via its indirect effect on peroxidase, but they did not support that the effects can run in the opposite direction where soil-C affects enzymes. Grazer-mediated shifts in how microbes deploy enzymes emerge as a plausible mechanism that affects soil-C. These linkages may be important to maintain soil-C sequestration in drylands which support large mammalian herbivores.

Saltwater and phosphorus drive unique soil biogeochemical processes in freshwater and brackish wetland mesocosms

AbstractCoastal ecosystems are exposed to saltwater intrusion but differential effects on biogeochemical cycling are uncertain. We tested how elevated salinity and phosphorus (P) individually and interactively affect microbial activities and biogeochemical cycling in freshwater and brackish wetland soils. In experimental mesocosms, we added crossed gradients of elevated concentrations of soluble reactive P (SRP) (0, 20, 40, 60, 80 μg/L) and salinity (0, 4, 7, 12, 16 ppt) to freshwater and brackish peat soils (10, 14, 17, 22, 26 ppt) for 35 d. We quantified changes in water chemistry [dissolved organic carbon (DOC), ammonium (), nitrate + nitrite (N + N), SRP concentrations], soil microbial extracellular enzyme activities, respiration rates, microbial biomass C, and soil chemistry (%C, %N, %P, C:N, C:P, N:P). DOC, , and SRP increased in freshwater but decreased in brackish mesocosms with elevated salinity. DOC similarly decreased in brackish mesocosms with added P, and N + N decreased with elevated salinity in both freshwater and brackish mesocosms. In freshwater soils, water column P uptake occurred only in the absence of elevated salinity and when P was above 40 µg/L. Freshwater microbial EEAs, respiration rates, and microbial biomass C were consistently higher compared to those from brackish soils, and soil phosphatase activities and microbial respiration rates in freshwater soils decreased with elevated salinity. Elevated salinity increased arylsulfatase activities and microbial biomass C in brackish soils, and elevated P increased microbial respiration rates in brackish soils. Freshwater soil %C, %N, %P decreased and C:P and N:P increased with elevated salinity. Elevated P increased %C and C:N in freshwater soils and increased %P but decreased C:P and N:P in brackish soils. Freshwater soils released more C and nutrients than brackish soils when exposed to elevated salinity, and both soils were less responsive to elevated P than expected. Freshwater soils became more nutrient‐depleted with elevated salinity, whereas brackish soils were unaffected by salinity but increased P uptake. Microbial activities in freshwater soils were inhibited by elevated salinity and unaffected by added P, but brackish soil microbial activities slightly increased with elevated salinity and P.

Different microbial functioning in natural versus man-made Mediterranean coastal lagoons in relation to season

Coastal marsh lagoons are of high ecological relevance playing a key role in the carbon cycle but are threatened to disappear due to global change effects. Restoration practices can counteract this process. This study compares the microbial heterotrophic functioning in three “new” man-made lagoons (created in 2016) to that in three “old” lagoons (two natural plus one created in 2002) from a Mediterranean coastal marsh. The activity of a range of microbial extracellular enzymes, the functional diversity, and the dissolved organic matter (DOM) quality, together with microbial biomass and water physic-chemistry were analysed seasonally in the water column of the six lagoons during 2017. Seasonality was a key driver for the lagoons microbial functioning mainly characterized by lowest microbial activities in winter when DOM was highly aromatic after storm events and an increase in organic matter degradation capabilities from winter to summer probably due to a rise in temperature and DOM input from primary production. Significant differences among lagoons appeared when they were less connected (summer and autumn), and old lagoons showed a greater utilization of proteinaceous and polysaccharidic compounds than new lagoons probably linked to their greater algal biomass (chlorophyll content), which may be supported by their larger phosphorus content. In autumn, there was also a greater use of allochthonous plant material in the old lagoons (higher XYL, and XYL/GLU ratio) probably related to their greater development of riparian vegetation. The functional diversity was the lowest in autumn when the lagoons showed distinct functional fingerprints and the lagoon created in 2002 was grouped with the new ones and distinguished from the natural ones, suggesting that it did not achieve complete restoration. Results indicate that microbial functional parameters related to organic matter use are a relevant and sensitive tool to study lagoon restoration processes, reflecting whole ecosystem nutrient and carbon cycling.

Seasonal changes in soil properties, microbial biomass and enzyme activities across the soil profile in two alpine ecosystems

Microbial biomass and extracellular enzyme activities control the rate of soil organic carbon decomposition, thereby affecting soil carbon pool. However, seasonal dynamics of soil microbial properties at different depths of the soil profile remain unclear. In this study, we sampled soils in the early, middle and late growing season at different soil depths (0–100 cm) in two alpine ecosystems (meadow and shrubland) on the Tibetan Plateau. We measured plant belowground biomass, soil properties, microbial biomass and extracellular enzyme activities. We found that soil properties changed significantly with sampling time and soil depth. Specifically, most of soil properties consistently decreased with increasing soil depth, but inconsistently varied with sampling time. Moreover, root biomass and microbial biomass decreased with increasing soil depth and increased with sampling time during the growing season. However, microbial extracellular enzyme activities and their vector properties all changed with depth, but did not vary significantly with time. Taken together, these results show that soil properties, microbial biomass and extracellular enzyme activities mostly decline with increasing depth of the soil profile, and soil properties and microbial biomass are generally more variable during the growing season than extracellular enzyme activities across the soil profile in these alpine ecosystems. Further studies are needed to investigate the changes in soil microbial community composition and function at different soil depths over the growing season, which can enhance our mechanistic understanding of whole-profile soil carbon dynamics of alpine ecosystems under climate change.

Influence of water availability and temperature on estimates of microbial extracellular enzyme activity.

Soils are highly heterogeneous and support highly diverse microbial communities. Microbial extracellular enzymes breakdown complex polymers into small assimilable molecules representing the limiting step of soil organic matter mineralization. This process occurs on to soil particles although currently it is typically estimated in laboratory aqueous solutions. Herein, estimates of microbial extracellular enzyme activity were obtained over a broad range of temperatures and water availabilities frequently observed at soil upper layers. A Pseudomonas strain presented optimum extracellular enzyme activities at high water activity whereas a desiccation resistant bacterium (Deinococcus) and a soil thermophilic isolate (Parageobacillus) showed optimum extracellular enzyme activity under dried (i.e., water activities ranging 0.5–0.8) rather that wet conditions. Different unamended soils presented a distinctive response of extracellular enzyme activity as a function of temperature and water availability. This study presents a procedure to obtain realistic estimates of microbial extracellular enzyme activity under natural soil conditions of extreme water availability and temperature. Improving estimates of microbial extracellular enzyme activity contribute to better understand the role of microorganisms in soils.