External Morphological Characters Research Articles

Study on Protection Strategies of Traditional Villages in the Central Plains of China

Background: Traditional villages in the Central Plains reflect the economic, social, cultural, and architectural technology characteristics of the region during a specific period. Their composition not only carries the coordination between people's living environment and the natural environment but also reflects people's social relations and institutional culture in collective living conditions. Therefore, it is of rich sociological and practical significance to explore the causes of the living environment formed by traditional villages in the Central Plains over thousands of years, the mutual influence of productivity and production relations, and the decline and transformation of the spatial environment. Method: With the help of theoretical systems such as architectural typology, residential area, and cultural geography. Research is conducted through on-site surveys and literature collection.Results: Conduct static research on the factors that affect the spatial form of villages and conduct classification and exploration from the aspects of village location, village form, spatial characteristics, courtyard layout, and residential characteristics. And build a research framework based on the formation logic, external morphological characteristics, and internal evolution mechanisms of the Central Plains villages and traditional residences and analyse the causes and cultural attributes of the Central Plains traditional villages and residences. Conclusion: From the perspective of cultural continuity and sustainable development, and based on the current situation, protection difficulties, and development opportunities of traditional villages and residential culture in the Central Plains, multiple protection paths for traditional villages in the Central Plains are drawn.

When colors mislead: Genomics and bioacoustics prompt re-classification of Asian flycatcher radiation (Aves: Niltavinae)

Traditional classification of many animals, including birds, has been highly dependent on external morphological characters like plumage coloration. However, both bioacoustics and genetic or genomic data have revolutionized our understanding of the relationships of certain lineages and led to sweeping taxonomic re-organizations. In this study, we present a case of erroneous delimitation of genus boundaries in the species-rich flycatcher subfamily Niltavinae. Genera within this subfamily have historically been delineated based on blue versus brown male body plumage until recent studies based on a few mitochondrial and nuclear loci unearthed several cases of generic misclassification. Here we use extensive bioacoustic data from 43 species and genomic data from 28 species for a fundamental reclassification of species in the Niltavinae. Our study reveals that song is an important trait to classify these birds even at the genus level, whereas plumage traits exhibit ample convergence and have led to numerous historic misattributions. Our taxonomic re-organization leads to new biogeographic limits of major genera, such that the genus Cyornis now only extends as far east as the islands of Sulawesi, Sula, and Banggai, whereas Eumyias is redefined to extend far beyond Wallace’s Line to the islands of Seram and Timor. Our conclusions advise against an over-reliance on morphological traits and underscore the importance of integrative datasets.

Lumping three nominal species into one: taxonomic revision of amphibian parasitic leeches of Torix in Far East Asia (Hirudinea: Glossiphoniidae)

Although most members of the freshwater leech family Glossiphoniidae have mid-body somites divided into three annuli, the genus Torix Blanchard, 1893 is distinguished by two-annuli somites. Torix has high species richness in Far East Asia, and three nominal species have been recognised in the Japanese Archipelago and adjacent regions that can be distinguished by a combination of both internal and external morphological characteristics. However, recent studies have shown that these diagnostic features are ontogenetically variable and this has resulted in taxonomic confusion among Torix species endemic to the Japanese Archipelago. In this study, we revisit the taxonomic accounts of T. orientalis (Oka, 1925) and T. tagoi (Oka, 1925), in addition to that of the recently redescribed T. tukubana (Oka, 1935) to clarify the diagnostic characteristics for each of the three species. Our morphological and molecular phylogenetic analyses demonstrated that the three Torix species in Japan are indistinguishable. We therefore conclude that these species should be synonymised and treated as a single species. The specific names orientalis and tagoi were simultaneously established under the genus Oligobdella Moore, 1918, therefore we acted as First Reviser and gave precedence to the name O. tagoi, thus the valid name for the Far East Asian Torix species is T. tagoi unless T. orientalis and T. tagoi are treated as distinct species. There are several type localities for T. tagoi and the name-bearing types have been lost, therefore we designate a neotype for this species to obviate zoological and nomenclatural issues. ZooBank: urn:lsid:zoobank.org:pub:E2DBF999-3B51-456F-AB04-A7D138E0AF2D

Investigation of morpho-anatomical, molecular, GC/Q-ToF, and LC/Q-ToF characterization of Salvia mellifera (black sage), Saliva apiana (white sage) and their varieties

Salvia mellifera (black sage) and Salvia apiana (white sage) are known for complex introgressive hybridization. Morphological variations between these two Salvia species and their varieties present overlapping characters that may cause confusion in identifying the genuine species in nature. Since these plants may be candidates for investigation of botanical-based drugs, this study aimed to differentiate the two Salvia species from each other and to group the closely resembling varieties. With many Salvia species offering health benefits, the morphological analysis and chemical fingerprinting of these two species will benefit their potential consideration for further evaluation of their health benefits.Detailed histology, histochemistry, molecular, and chemical characterizations were used to identify distinguishing characteristics of genuine S. mellifera and S. apiana along with two varieties resembling S. mellifera or S. apiana. Macroscopic and microscopic characterization of leaf lamina and types of trichomes can differentiate the morphology of S. mellifera from S. apiana. The histochemical analysis of glandular trichomes revealed the presence of flavonoids, terpenes, and other common secondary metabolites. Micropatterns of calcium oxalate crystals were identified as being characteristic and aiding in differentiation.Even though the external morphological characters of the two varieties resemble an intermediate between S. mellifera and S. apiana, chemical qualitative analyses via LC/Q-ToF and GC/Q-ToF indicate a chemical fingerprint more similar to that of S. apiana. This is a detailed analysis using various approaches including morpho-anatomy, trichome micromorphology, molecular analysis, and chemical similarities to identify and differentiate between S. mellifera, S. apiana, and their close varieties.

A new genus and species of the Nabidae (Hemiptera, Heteroptera, Cimicomorpha) from mid-Cretaceous amber of Northern Myanmar

A new genus and species of fossil Nabidae, Feroculipodus obtusidentatus gen. et sp. nov., is described from mid-Cretaceous amber, which represents the second fossil record of Nabidae from Myanmar and is classified under the subfamily Prostemmatinae. The new species is distinguished from other nabids based on the pronotum not clearly divided into an anterior and a posterior part, fore femur with an obtuse angular process on the ventral surface, basal cell on membrane absent. Research on the newly discovered fossil specimen as a source of character information, provides us with a new perspective to analysis the phylogenetic relationships of Nabidae through external morphological characters.

Mitochondrial and nuclear gene sequencing confirms the presence of the invasive sea anemone Diadumene lineata (Verrill, 1869) (Cnidaria: Actiniaria) in Argentina.

Diadumene lineata is one of the most widespread sea anemone species worldwide. Although this species has been reported a few times on the Argentine coast since 2004, its identification has traditionally been based on external morphological characteristics, and in most cases no voucher specimens are available to support previous records. In this study, we obtained DNA sequences of two mitochondrial markers (12S and 16S) and two nuclear markers (18S and 28S) from specimens of D. lineata collected in two locations on the Argentine coast separated by almost 800 km. Additionally, we conducted an analysis of the morphology, as well as the types and size ranges of cnidae, using specimens collected at three different locations along the Argentine coast. Furthermore, since introduced populations of D. lineata are presumably ephemeral and only reproduce asexually outside their native range, we examined the internal anatomy of representatives from the Argentine coast for gametogenic tissue as an indication of whether they might be capable of sexual reproduction. DNA data support our morphological identification, including cnidae analyses, of the specimens as D. lineata. Furthermore, all specimens examined were determined to be sterile. Genetic sequence comparisons, phylogenetic reconstruction, and cnidae data support the identification of individuals of D. lineata from Mar Chiquita and Garipe Beach, confirming the presence of the species on the Argentine coast using both morphological and molecular tools. The absence of fertile specimens suggests that each sampled population is likely reproducing only by asexual reproduction and possibly composed of clones. The presence of an additional category of longer p-mastigophores B2a in the actinopharynx and filaments, as well as holotrichs in the column, is also reported. For the first time, we have confirmed the presence of D. lineata in Argentina through molecular data. Additionally, our findings indicate that the analyzed specimens are sterile, suggesting that this species is not engaging in sexual reproduction in the studied localities. It is crucial to continue monitoring the populations of D. lineata along the Argentine coast to assess whether they establish sexual reproduction, expand their distribution range or disappear, or potentially cause any harm to local species or alterations in benthic communities.

Chromosome-level genome assembly of Przevalski’s partridge (Alectoris magna)

Przevalski’s partridge (Alectoris magna) is one of the birds in the genus Alectoris endemic to China. The distribution of A. magna was narrow, and it was only found in parts of the Qinghai, Gansu, and Ningxia provinces. A. magna was considered a monotypic species until it was distinguished into two subspecies. However, external morphological characteristics, rather than genetic differences or evolutionary relationships, are now commonly used as evidence of subspecies differentiation. In this study, a chromosome-level reference genome of A. magna has been constructed by combining Illumina, PacBio and Hi-C sequencing data. The 1135.01 Mb A. magna genome was ultimately assembled. The genome showed 96.9% completeness (BUSCO), with a contig N50 length of 23.34 Mb. The contigs were clustered and oriented on 20 chromosomes, covering approximately 99.96% of the genome assembly. Additionally, altogether 19,103 protein-coding genes were predicted, of which 95.10% were functionally annotated. This high-quality genome assembly could serve as a valuable genomic resource for future research on the functional genomics, genetic protection, and interspecific hybridization of A. magna.

Relicts in the mist: Two new frog families, genera and species highlight the role of Pantepui as a biodiversity museum throughout the Cenozoic

The iconic mountains of the Pantepui biogeographical region host many early-diverging endemic animal and plant lineages, concurring with Conan Doyle’s novel about an ancient “Lost World”. While this is the case of several frog lineages, others appear to have more recent origins, adding to the controversy around the diversification processes in this region. Due to its remoteness, Pantepui is challenging for biological surveys, and only a glimpse of its biodiversity has been described, which hampers comprehensive evolutionary studies in many groups. During a recent expedition to the Neblina massif on the Brazil-Venezuela border, we sampled two new frog species that could not be assigned to any known genus. Here, we perform phylogenetic analyses of mitogenomic and nuclear loci to infer the evolutionary relationships of the new taxa and support their description. We find that both species represent single lineages deeply nested within Brachycephaloidea, a major Neotropical clade of direct-developing frogs. Both species diverged >45 Ma from their closest relatives: the first is sister to all other Brachycephaloidea except for Ceuthomantis, another Pantepui endemic, and the second is sister to Brachycephalidae, endemic to the Brazilian Atlantic Forest. In addition to these considerable phylogenetic and biogeographic divergences, external morphology and osteological features support the proposition of two new family and genus-level taxa to accommodate these new branches of the amphibian tree of life. These findings add to other recently described ancient vertebrate lineages from the Neblina massif, providing a bewildering reminder that our perception of the Pantepui’s biodiversity remains vastly incomplete. It also provides insights into how these mountains acted as “museums” during the diversification of Brachycephaloidea and of Neotropical biotas more broadly, in line with the influential “Plateau theory”. Finally, these discoveries point at the yet unknown branches of the tree of life that may go extinct, due to global climate change and zoonotic diseases, before we even learn about their existence, amphibians living at higher elevations being particularly at risk.

Characterization of intrapuparial development of Musca domestica (Diptera: Muscidae), under different temperatures in laboratory conditions.

Musca domestica (Linnaeus, 1758) (Diptera: Muscidae), popularly known as "housefly", is a highly synanthropic species, with economic, medical-sanitary, veterinary, and forensic importance. It is able to cause damage to health, transmit pathogenic agents, cause infection in domestic animals, and, in its immature stage, cause secondary myiasis. The scavenging habit of its immature stages makes these flies pioneers in colonizing both human and animal carcasses, from the initial stages of corpse decomposition to the final stages. Intrapuparial development studies of all stages of the biological cycle of these insects help estimate pupal age, being useful to forensic entomology to aid in determining the minimum postmortem interval (minPMI). This study describes, morphologically, the external structures of the pupae, under temperatures of 23, 27, and 30 ± 1 °C aiming to identify the characteristics that define their developmental stages and estimation of the pupae age of M. domestica. The whole experiment was carried out under laboratory conditions, with relative humidity 60 ± 10% and 12 hours of photoperiod. The process of pupariation and pupation including pre-pupae phases were observed; larvae pupae apolysis; early cryptocephalic pupae; late cryptocephalic pupae; phanerocephalic pupae; pharate adult, discriminated by eye color (transparent eyes, pink eyes, and red eyes); and the emergency of adults, which occurred in the intervals of 162-180; 138-144, and 96-102 hr, respectively, being described throughout the metamorphosis of the external morphological characteristics of the pupal stage of M. domestica.

Morphological differentiation in giant salamanders, Andrias japonicus, A. davidianus, and their hybrids (Urodela, Cryptobranchidae), and its taxonomic implications.

For a long time, it has been debated whether the two giant salamanders, Andrias japonicus from Japan and A. davidianus from China, are conspecific or heterospecific. Morphological information about their diagnostic characteristics has been limited, without considering sexual dimorphism and/or body size variation. Recently, A. davidianus, which was introduced into Japan sometime in the past, has been found to hybridize with A. japonicus in situ. Taxonomic identification of individuals involved in this unusual breeding is made based on mitochondrial and nuclear DNA analyses. This identification method is time-consuming and costly. Thus, developing easier methods of identification, such as utilizing external morphological characteristics, is urgently needed. In this study, we verify previous descriptions showing that A. davidianus has a longer relative tail length than A. japonicus, and the tubercles on the lower jaw and throat were present in both sexes of A. davidianus. In addition, many head characteristics were found to be relatively larger in A. davidianus than in A. japonicus, which were new distinguishing characters. These morphological differences help support the idea that these are heterospecific lineages. In hybrids, relative values of head width and tail length were larger than those of A. japonicus, and the tubercles on their lower jaw and throat were present as in A. davidianus, suggesting that the hybrids and A. davidianus are distinguishable from A. japonicus.

Comparative Mitogenomics Reveals Cryptic Species in Sillago ingenuua McKay, 1985 (Perciformes: Sillaginidae).

It is unreliable to identify marine fishes only by external morphological features. Species misidentification brings great challenges to fishery research, resource monitoring and ecomanagement. Sillago ingenuua is an important part of commercial marine fishes, and in which, the morphological differences between different groups are not obvious. Here, we compared different geographical groups of S. ingenuua which were collected from Xiamen, Dongshan, Keelung, Songkhla and Java. The results showed that all samples of S. ingenuua were similar in external morphological characteristics and the shape of the swim bladder, but there were two distinctive lineages which were flagged as cryptic species based on DNA barcoding. The comparative mitogenomic results showed that S. ingenuua A and S. ingenuua B were identical in structural organization and gene arrangement. Their nucleotide composition and codon usage were also similar. A phylogenetic analysis was performed based on 13 concatenated PCGs from eight Sillago species. The results showed that the genetic distance between S. ingenuua A and S. ingenuua B was large (D = 0.069), and this genetic distance was large enough to reveal that S. ingenuua A and S. ingenuua B might be different species.

Dynamics of Diversity of Spined Loaches of Genus Cobitis (Cobitidae) of Trans-Caucasus in the Anthropogenic Period According to the Data of Museum Collections. II. Morphokaryological Variation, Taxonomic Status, and Diagnostic Characteristics of Adjaran Spined Loaches

The variability of external morphological characters, coloring features, craniological and karyological characteristics of spined loaches from Adjara were studied to clarify the taxonomic diversity of spined loaches of Transcaucasia. The study was based on materials from the collection of the Zoological Museum of Moscow State University, including the type series of Cobitis satunini, and original results. The morphogenetic homogeneity of the studied populations and their species isolation from other known Transcaucasian species were confirmed. Based on the data obtained, a modern species diagnosis of C. satunini sensu stricto is presented, whose range is limited to the water bodies of Adjara.

Morphological Deformities in Stingrays (Dasyatidae) from the Rameswaram Island, South India

The present study reports the deformities in two different species of stingrays Maculabatis bineeshi and Neotrygon kuhlii along the Rameswaram Island. The structural deformity was observed in M. bineeshi species that were collected from Pamban–Therkuvadi fish landing centre, which was the first to be recorded along the Indian coasts with rostral irregularity of the aperture from the anterior margin of the snout around the right margin of the disc from the first gill opening. In addition to the first record, vertebral column deformity was observed in N. kuhlii, which was collected from Kunthukal fish landing centre. The external morphological characteristics showed a curved tail that had vertebral column deformities with severe scoliosis–kyphosis–lordosis starting from the pectoral girdle to the tail region

Phylogenetic analysis of Aciagrion Selys (Odonata: Coenagrionidae)

ABSTRACT Odonates are useful biological indicators of environmental health because of their pollution-free habitat requirements and amphibiotic life cycle. Due to habitat destruction by industrial development, there is a need to name these odonates and obtain their genetic data to be used in understanding their evolutionary history for biodiversity conservation. Aciagrion is a poorly known and taxonomically difficult genus of oriental damselflies. Species of this genus cannot be distinguished on the basis of morphological characters alone as they are morphologically similar to the damselflies of other genera (Ischnura and Amphiallagma) and may also be referred to as cryptic species. Here, therefore, molecular studies are carried out to distinguish the species of this genus. The phylogenetic relationships of five species of genus Aciagrion have been explored using molecular (based on concatenated sequences of mitochondrial genes- COI, ND1 and 16S rRNA genes) as well as external morphological characters. Single-linkage cluster analysis of morphological data sets did not explain the relationships appropriately among the species of this genus as outgroup species were also retrieved within ingroup species. Interspecific genetic divergence, conserved, variable, parsimony-informative sites, nucleotide base composition and transition/transversion bias based on concatenated gene sequences have been calculated for these species. It is found that a multigene concatenation approach interprets phylogeny more appropriately than the morphological data alone. Presently, a COI gene fragment sequence for one species (the endemic Aciagrion hisopa), 16S rRNA gene fragments for four species and ND1 gene fragments for five species have been submitted for the first time to GenBank, and phylogenetic relationships based on three genes have also been determined for the first time. Aciagrion migratum is a new record from India.

Step-by-step Dissection Protocol of Apicotermitinae Worker (Blattaria: Isoptera)

Apicotermitinae are soldierless termites highly abundant in tropical forests. The taxonomy of this subfamily is based on characters of worker cast and winged forms when present. However, the procedures necessary to dissect termite workers to observe their external and internal morphological characteristics are not well detailed in any study. Here, we describe a step-by-step protocol for worker dissection of soldierless termite species. We suggest the use of Polyvinyl Alcohol (PVA) for cleaning and visualization of the gizzard and enteric valve, and glycerin to remove tergites and sternites and describe in detail the dissection of the gizzard and enteric valve, and how visualize the insertion of Malpighian tubules.

Morphological Characteristics and Occurrence of an Important Stem-Boring Pest, Nassophasis sp. (Coleoptera: Rhynchophorinae)

Dendrobium plays a key role in the orchid industry, with ornamental, medicinal, and economic value. Recently, we found a newly recorded boring pest damaging Dendrobium in Guizhou Province, China. The species is identified as Nassophasis sp. (Coleoptera: Curculionidae: Rhynchophorinae) by morphological and anatomical features. The occurrence and biological characteristics of this species were verified through field investigation and indoor experiments. The results showed that detailed external morphological and genitalia characters and male-female differences are described to identify Nassophasis sp. The pest produces three generations per year, with overlapping generations. The adults overwinter in the root stains of Dendrobium and emerge in mid-March of the following year. Adults feed on stems, leaves, and flowers, often laying their eggs inside the stems; larvae then bore into the stems causing decaying and hollowing until complete immature development. There are three larval instars, grouped according to their head capsule width and body length, which were measured following Dyar’s law and Crosby’s law of growth and showed a significant linear regression (p < 0.0001). The results of this study provide a theoretical basis for the prediction and comprehensive control of the insect.

Two New Shellear Species (Gonorhynchiformes: Kneriidae), from the Luansa River (Upper Congo Basin): Hidden Diversity Revealed by Integrative Taxonomy

Two new Kneria species, K. luansaensis sp. nov. and K. maxi sp. nov., are described from the Luansa River, a left bank tributary of the lower Luapula in the Bangweulu–Mweru ecoregion, based on an integrative approach using morphological and COI barcoding evidence. While K. luansaensis sp. nov. occurs from the source of the Luansa further downstream to above the last of the three Sanshifolo Falls, K. maxi sp. nov. only occurs downstream of all these three major falls. In Kneria, males of about ≥ 33 mm LS have an opercular and a postopercular organ. The number of lamellae on the latter seems to contain some alpha-taxonomic information, although this requires further study as allometric changes occur at about ≤ 45 mm LS. Additional external morphological characters differ between sexes, i.e., the (i) pectoral fin width (wider in males than females), (ii) dorsal fin height (longer in males than females), and (iii) length of the longest ray of the lower caudal fin lobe (longer in males than females). Agriculture, fishing with ichthyotoxines, and logging are the most pressing threats on the Luansa and thus to both the new species. Their discovery in one of the rivers of the Kundelungu Plateau and its surroundings located outside the present-day boundaries of the Kundelungu National Park highlights the need for a refined and improved protection strategy for this freshwater key biodiversity area.

Studies on the Ennominae Fauna and Taxonomy of the Dağlıca (Geometridae, Lepidoptera)

Ennominae is an important group in the Geometridae family that contains problematic species with very similar external morphological characters. In this study, Ennominae species collected from Yüksekova Dağlıca town of Hakkari Province between April and September 2017 were evaluated from a faunistic and taxonomic perspective. 28 species were identified in the study. Charissa onustaria, C. subtaurica and Crocallis tusciaria species were identified for the first time from Hakkari Province. C. loebeli, Neognopharmia cataleucaria, and Ramitia kufrana were detected in the region are also important endemic taxa for the Turkish fauna. Rhoptria mardinata and Eumera hoferi, known only in Türkiye and Iran, are other rare species found in the region. R. mardinata was presented with photographs of male genitalia for the first time. Morphological and taxonomic aspects of the species under the genera Dicrognophos, Gnopharmia, Crocallis, Bellachima, Charissa, Synopsia and Nychiodes are discussed

Deepest known novel species of the genus Ophiuroglypha Hertz, 1927 (Echinodermata: Ophiuroidea) from the central rift zone, Philippine Sea

A new species of brittle star was collected in 2021 by the manned submersible “Fendouzhe” from the central rift zone deep waters, Philippine Sea, at a depth of 7729 m. It is described as Ophiuroglypha fendouzhe sp. nov., and is distinguished from its congeners based on the following features: slender arms, separated dorsal and ventral arm plates, overlapping large disc scales, and distally contiguous radial shields. We provide comprehensive descriptions of the external morphological features, including characteristics of the arm skeleton, and a phylogenetic analysis based on COI sequences. The interspecific genetic distance variation in the genus Ophiuroglypha found in this study was 3.89% to 24.25%. The new species constitutes the deepest known record for the genus Ophiuroglypha.

Integrative taxonomy of theIphisa elegansspecies complex (Squamata: Gymnophthalmidae) leads to the description of five new species

AbstractWe reassessed the taxonomic status of lizards of the Iphisa elegans complex, a monotypic genus of Gymnophthalmidae, based on the congruence between mitochondrial DNA (Cytb) and nuclear DNA (c-mos and prlr) and characters of internal and external morphology, both quantitative and qualitative (meristic, morphometric and hemipenial), throughout its wide Amazonian distribution. The congruence of three species delimitation analyses (mPTP, bGMYC and ASAP), nuclear DNA topology and morphological evidence resulted in nine operational taxonomic units in the genus Iphisa. Besides being recovered as monophyletic groups in mitochondrial and nuclear phylogenetic trees, these nine operational taxonomic units can be distinguished by external and hemipenial morphology. Finally, we propose a new taxonomic rearrangement of the genus, whereby we: (i) restrict I. elegans to north-east Amazonia in the Guiana Shield and southwards, west from the Purus–Madeira interfluvium, on the right bank of the Amazon River; (ii) elevate Iphisa elegans soinii Dixon, 1974 to the specific level Iphisa soinii Dixon, 1974 comb. nov.; and (iii) name and describe five new species.