An airship is a lighter than air, aerial vehicle whose model is based on dynamic, aerodynamic, aerostatic and propulsion forces and torques. Apart from other, aerodynamic forces and toques are difficult to measure. In this work, an estimation scheme for aerodynamic forces and torques based on the Extended Kalman Filter (EKF) is presented. It is assumed that the airship attitude and position estimates are available. EKF estimates the airship body axes linear and angular velocities and aerodynamic forces and torques. As the method measures a complete aerodynamic model instead of measuring its individual parameters by utilizing minimum auxiliary state variables, it is computationally non-intensive and can provide online aerodynamic model information that can be used in controller implementation in a real-time environment. Nonlinear simulation environment is developed for the experimental airship and EKF performance is evaluated. For validating the estimator's performance, 3-σ uncertainty bounds and error analysis, estimator convergence analysis and it's closed-loop simulations with Sliding Mode Controller have been performed. The simulation results show that EKF successfully estimates the airship states and aerodynamic forces and torques with minimum estimation error enhancing the model-based nonlinear controller performance.