Experimental Manipulation Research Articles

Soil warming effects on the transpiration of trees and shrubs in a subtropical secondary forest: A manipulative experiment

The climate warming can increase the productivity of some species while decrease that of others, therefore, knowledge of species-specific responses to warming is helpful to understand the possible trajectory of forest ecosystems. Despite the importance of the subtropical secondary broadleaf forests developed from afforestation in South China, our understanding of how the transpiration of trees and shrubs co-growing in these forests responds to soil warming is limited. To explore the effects of soil warming on transpiration and associated ecophysiological traits of trees and shrubs in wet and dry seasons, as well as to clarify respective contributions of trees and shrubs transpiration to the stand total, we conducted a manipulative experiment of soil warming (+2 ℃, WA) and control (CK) in a subtropical secondary broadleaf forest in South China, and continuously monitored the transpiration (based on sap flow) of trees, Schima superba and Acacia auriculiformis, and that (derived from leaf temperature and microclimate) of shrubs, Psychotria asiatica and Castanopsis chinensis, from 2021 to 2022. We also measured leaf water potentials, leaf nutrient status, and δ13C-derived intrinsic water use efficiency (WUEi). Soil warming did not significantly alter the transpiration of trees, with the exception of A. auriculiformis in 2022, whereas it notably increased transpiration of both shrubs. We attributed the stimulation of shrubs’ transpiration mainly to the more favorable leaf water potentials under warming condition. Due to the increased transpiration, the contribution of shrubs to stand transpiration was consequently increased, highlighting the potential role of shrubs in the hydrological dynamics of forest ecosystems. Additionally, the WUEi, soil main macro-nutrients, and leaf nutritional status of all species were not significantly affected by soil warming. These findings indicated that the carbon-water exchange and nutrient status of the studied plants can be maintained even when exposed to moderate increases in soil temperature and relatively drier condition, reflecting the resilience of the subtropical secondary broadleaf forest to possible climate warming. Further research on the interaction and competition of co-existing trees and shrubs under soil warming will improve the prediction of forest dynamics under future climate change, which benefits the efforts to conserve such forests in order to address the environmental pressure in the region.

Does Sleep Reduce Intrusive Memories After Analogue Trauma? Recent Findings of Experimental Sleep Manipulations Using the Trauma Film Paradigm

Abstract Purpose of Review Intrusive memories are common in the aftermath of trauma, and these can develop into a pervasive, distressing symptom of posttraumatic stress disorder (PTSD). Sleep disturbances have been shown to contribute to later development and maintenance of overall PTSD symptoms, including intrusive memories of trauma. This paper summarises recent research examining the role of sleep in the development of trauma-related intrusive memories. Recent Findings There have been initial conflicting results across a small number of studies, namely, whether sleep following experimental analogue trauma results in increased or decreased frequency of later intrusive memories. However, the results of three recent meta-analyses suggest a beneficial effect of sleep early after analogue trauma exposure. Summary The relationship between sleep following analogue trauma and reduction in intrusive memory frequency may be due to the role of sleep in the consolidation and integration of traumatic memories into existing autobiographical knowledge. More research is needed to investigate the mechanism of action for this relationship.

Vaccinium dwarf shrubs responses to experimental warming and herbivory resistance treatment are species- and context dependent

Climate change impacts on species and ecosystem functioning may depend on climatic context and study systems. Climate warming and intensified herbivory are two stressors to plants that often appear in combination and are predicted to increase in cold environments. Effects of multiple drivers on plant performance are difficult to predict and warrant studies that use experimental manipulations along climatic gradients to produce more realistic knowledge. Our three study sites by the Sognefjord in Norway, that differed mainly in climatic conditions (ca. 5°C growing season difference), ranged from hemi-boreal lowland (100 masl, Low), via boreal mid-montane (500 masl) to alpine timberline (900 masl, High) bioclimates. At each site, in a randomized block design, we simulated growing-season warming using open-top chambers (OTCs) and experimentally induced herbivory resistance using the plant hormone methyl jasmonate (MeJA). We recorded growth, mortality, flower and fruit numbers, and insect herbivory on tagged ramets in permanent plots across three years (2016-2018) in three open woodland populations of two functionally important plant species with contrasting traits, Vaccinium myrtillus (bilberry) and V. vitis-idaea (lingonberry). Growth of both dwarf shrubs decreased with warming in the warm lowland populations (Low) but increased in the alpine populations (High). Shoot mortality increased most with warming at Low but was reduced at High. Reproduction, both flowering and fruiting, decreased with induced resistance treatment, but the effect was larger when warmed for bilberry and increased with elevation for both species. Leaf herbivory in bilberry increased with warming at Low but decreased at High. The combined warming and resistance treatment had only synergistic negative interaction effects on fruit numbers in bilberry. The clear context- and species-dependent effects of climate warming and increased resistance in this study may predict a potential decline in performance, as well as abundance and distribution, of these functionally important Vaccinium species at our lowest site. Bilberry reproduction appeared to be particularly susceptible to both climate warming and induced resistance in the manipulated populations. Such combined negative effects on plant performance are likely to have considerable knock-on effects via altered species’ interactions and ecosystem functioning.

Integrating population genetics, stem cell biology and cellular genomics to study complex human diseases.

Human pluripotent stem (hPS) cells can, in theory, be differentiated into any cell type, making them a powerful in vitro model for human biology. Recent technological advances have facilitated large-scale hPS cell studies that allow investigation of the genetic regulation of molecular phenotypes and their contribution to high-order phenotypes such as human disease. Integrating hPS cells with single-cell sequencing makes identifying context-dependent genetic effects during cell development or upon experimental manipulation possible. Here we discuss how the intersection of stem cell biology, population genetics and cellular genomics can help resolve the functional consequences of human genetic variation. We examine the critical challenges of integrating these fields and approaches to scaling them cost-effectively and practically. We highlight two areas of human biology that can particularly benefit from population-scale hPS cell studies, elucidating mechanisms underlying complex disease risk loci and evaluating relationships between common genetic variation and pharmacotherapeutic phenotypes.

Retinal metabolism displays evidence for uncoupling of glycolysis and oxidative phosphorylation via Cori-, Cahill-, and mini-Krebs-cycle

The retina consumes massive amounts of energy, yet its metabolism and substrate exploitation remain poorly understood. Here, we used a murine explant model to manipulate retinal energy metabolism under entirely controlled conditions and utilised 1H-NMR spectroscopy-based metabolomics, in situ enzyme detection, and cell viability readouts to uncover the pathways of retinal energy production. Our experimental manipulations resulted in varying degrees of photoreceptor degeneration, while the inner retina and retinal pigment epithelium were essentially unaffected. This selective vulnerability of photoreceptors suggested very specific adaptations in their energy metabolism. Rod photoreceptors were found to rely strongly on oxidative phosphorylation, but only mildly on glycolysis. Conversely, cone photoreceptors were dependent on glycolysis but insensitive to electron transport chain decoupling. Importantly, photoreceptors appeared to uncouple glycolytic and Krebs-cycle metabolism via three different pathways: (1) the mini-Krebs-cycle, fuelled by glutamine and branched chain amino acids, generating N-acetylaspartate; (2) the alanine-generating Cahill-cycle; (3) the lactate-releasing Cori-cycle. Moreover, the metabolomics data indicated a shuttling of taurine and hypotaurine between the retinal pigment epithelium and photoreceptors, likely resulting in an additional net transfer of reducing power to photoreceptors. These findings expand our understanding of retinal physiology and pathology and shed new light on neuronal energy homeostasis and the pathogenesis of neurodegenerative diseases.

Retinal metabolism displays evidence for uncoupling of glycolysis and oxidative phosphorylation via Cori-, Cahill-, and mini-Krebs-cycle.

The retina consumes massive amounts of energy, yet its metabolism and substrate exploitation remain poorly understood. Here, we used a murine explant model to manipulate retinal energy metabolism under entirely controlled conditions and utilised 1H-NMR spectroscopy-based metabolomics, in situ enzyme detection, and cell viability readouts to uncover the pathways of retinal energy production. Our experimental manipulations resulted in varying degrees of photoreceptor degeneration, while the inner retina and retinal pigment epithelium were essentially unaffected. This selective vulnerability of photoreceptors suggested very specific adaptations in their energy metabolism. Rod photoreceptors were found to rely strongly on oxidative phosphorylation, but only mildly on glycolysis. Conversely, cone photoreceptors were dependent on glycolysis but insensitive to electron transport chain decoupling. Importantly, photoreceptors appeared to uncouple glycolytic and Krebs-cycle metabolism via three different pathways: (1) the mini-Krebs-cycle, fuelled by glutamine and branched chain amino acids, generating N-acetylaspartate; (2) the alanine-generating Cahill-cycle; (3) the lactate-releasing Cori-cycle. Moreover, the metabolomics data indicated a shuttling of taurine and hypotaurine between the retinal pigment epithelium and photoreceptors, likely resulting in an additional net transfer of reducing power to photoreceptors. These findings expand our understanding of retinal physiology and pathology and shed new light on neuronal energy homeostasis and the pathogenesis of neurodegenerative diseases.

Effectiveness of smart LED strips at mid-block crosswalks under distracted driving conditions

We investigated the effectiveness of an LED-based smart mid-block crosswalk system in mitigating the detrimental effects of driver engagement in non-driving-related tasks (NDRTs) with behavioural, performance, and subjective measurements. We designed a 2 (Crosswalk: smart vs conventional) by 2 (Task complexity: low vs. high NDRT) within-subjects experiment. Thirty-six drivers drove along four urban scenarios in a static driving simulator. We collected data on driving behaviour (speed, reaction distance), and safety (minimum time-to-collision [MTTC]), as well as subjective driver ratings on the perceived task load and their trust in the technology used, and performance levels achieved while performing the NDRTs.Behavioural and performance observations showed that the smart mid-block crosswalk resulted in greater reaction distances and MTTC values when drivers interacted with pedestrians, thus indicating improved safety. Remarkably, the results also revealed that increased NDRT complexity does not negatively affect the smart crosswalk effectiveness in terms of driver-pedestrian collision prevention (i.e., MTTC does not decrease significantly). However, the NDRT complexity influenced driving performance in terms of speed and reaction distance at brake pedal pressure, with drivers exhibiting lower speeds and lower reaction distances with higher task loads. Moreover, the subjective ratings and performance levels while performing a NDRT reflected the experimental manipulation, with drivers perceiving higher task loads and performing worse in the higher NDRT complexity condition. Overall, the smart mid-block crosswalk led to a safer driver-pedestrian interaction compared to conventional crosswalks and achieved a good acceptance level both of which augur well for the widespread future installation of this technology.

Coupling and uncoupling of midline morphogenesis and cell flow in amniote gastrulation

Large-scale cell flow characterizes gastrulation in animal development. In amniote gastrulation, particularly in avian gastrula, a bilateral vortex-like counter-rotating cell flow, called ‘polonaise movements’, appears along the midline. Here, through experimental manipulations, we addressed relationships between the polonaise movements and morphogenesis of the primitive streak, the earliest midline structure in amniotes. Suppression of the Wnt/planar cell polarity (PCP) signaling pathway maintains the polonaise movements along a deformed primitive streak. Mitotic arrest leads to diminished extension and development of the primitive streak and maintains the early phase of the polonaise movements. Ectopically induced Vg1, an axis-inducing morphogen, generates the polonaise movements, aligned to the induced midline, but disturbs the stereotypical cell flow pattern at the authentic midline. Despite the altered cell flow, induction and extension of the primitive streak are preserved along both authentic and induced midlines. Finally, we show that ectopic axis-inducing morphogen, Vg1, is capable of initiating the polonaise movements without concomitant PS extension under mitotic arrest conditions. These results are consistent with a model wherein primitive streak morphogenesis is required for the maintenance of the polonaise movements, but the polonaise movements are not necessarily responsible for primitive streak morphogenesis. Our data describe a previously undefined relationship between the large-scale cell flow and midline morphogenesis in gastrulation.

Coupling and uncoupling of midline morphogenesis and cell flow in amniote gastrulation.

Large-scale cell flow characterizes gastrulation in animal development. In amniote gastrulation, particularly in avian gastrula, a bilateral vortex-like counter-rotating cell flow, called 'polonaise movements', appears along the midline. Here, through experimental manipulations, we addressed relationships between the polonaise movements and morphogenesis of the primitive streak, the earliest midline structure in amniotes. Suppression of the Wnt/planar cell polarity (PCP) signaling pathway maintains the polonaise movements along a deformed primitive streak. Mitotic arrest leads to diminished extension and development of the primitive streak and maintains the early phase of the polonaise movements. Ectopically induced Vg1, an axis-inducing morphogen, generates the polonaise movements, aligned to the induced midline, but disturbs the stereotypical cell flow pattern at the authentic midline. Despite the altered cell flow, induction and extension of the primitive streak are preserved along both authentic and induced midlines. Finally, we show that ectopic axis-inducing morphogen, Vg1, is capable of initiating the polonaise movements without concomitant PS extension under mitotic arrest conditions. These results are consistent with a model wherein primitive streak morphogenesis is required for the maintenance of the polonaise movements, but the polonaise movements are not necessarily responsible for primitive streak morphogenesis. Our data describe a previously undefined relationship between the large-scale cell flow and midline morphogenesis in gastrulation.

Multiple‐stressor effects on leaf litter decomposition in freshwater ecosystems: A meta‐analysis

Abstract Recent years have witnessed a surge in research on the effects of multiple stressors in freshwater ecosystems. While studies have increased, the synthesis of their findings into a broader understanding of ecosystem‐level effects remains an ongoing endeavour. Leaf litter decomposition, a frequently investigated and pivotal ecosystem function in freshwaters, is sensitive to changes in abiotic conditions and biotic communities, and therefore susceptible to multiple‐stressor effects. Here, we synthesize findings from 27 manipulative experimental studies encompassing 61 responses of litter decomposition to paired stressors such as warming, nutrient enrichment and emerging pollutants in freshwater ecosystems. We calculated the individual and overall interaction effect sizes resulting from two stressors occurring simultaneously. Furthermore, we analysed the effect of moderator variables in the size and direction of interaction effect sizes using a meta‐analytical approach. Although the vote‐counting method showed additive interactions to dominate individual observations (91.8%), weighted random‐effects meta‐analysis revealed an overall antagonistic interaction between stressors (i.e. the cumulative effect of paired stressors on litter decomposition was less than the sum of their single effects). Our results emphasized the influence of experimental characteristics such as macroinvertebrate involvement, habitat type (lentic vs. lotic) and litter quality (assumed from plant mycorrhizal association) in shaping the responses of litter decomposition to multiple stressors. Our meta‐analysis highlights the need to incorporate local ecological complexities in manipulative experiments to improve predictions of multiple‐stressor effects on biodiversity and ecosystem functions. The present study underscores the importance of considering biotic interactions and adopting the metacommunity framework in conservation and restoration actions to support the management of freshwater ecosystems in an era of rapid global change. Read the free Plain Language Summary for this article on the Journal blog.

Developmental stage‐dependent effects of perceived predation risk on nestling tree swallows (Tachycineta bicolor)

AbstractThe risk of predation directly affects the physiology, behavior, and fitness of wild birds. Strong social connections with conspecifics could help individuals recover from a stressful experience such as a predation event; however, competitive interactions also have the potential to exacerbate stress. Few studies have investigated the interaction between environmental stressors and the social landscape in wild bird populations. In 2 years of field studies, we experimentally simulated predation attempts on breeding female tree swallows (Tachicyneta bicolor). At the same time, we manipulated female breast plumage color, a key social signal. Simulated predation events on tree swallows early in the nestling period reduced young nestlings' mass by approximately 20% and shortened telomere lengths. Ultimately, only 31% of nestlings in the predation group fledged compared with 70% of control nestlings. However, the effects of experimental manipulations were timing dependent: the following year when we swapped the order of the experimental manipulations and simulated predation during incubation, there were no significant effects of predation on nestling condition or fledging success. Contrary to our expectations, manipulation of the social environment did not affect the response of tree swallows to simulated predation. However, manipulating female plumage during the nestling period did reduce nestling skeletal size and mass, although the effects depended on original plumage brightness. Our data demonstrate that transient stressors on female birds can have carry‐over effects on their nestlings if they occur during critical periods in the breeding season.

Effects of seasonal precipitation regimes on microbial biomass and extracellular enzyme activity during shrub foliar litter decomposition in a subtropical forest

Elucidating the mechanisms underlying microbial biomass and extracellular enzyme activity responses to the seasonal precipitation regime during foliar litter decomposition is highly important for understanding the material cycle of forest ecosystems in the context of global climate change; however, the specific underlying mechanisms remain unclear. Hence, a precipitation manipulation experiment involving a control (CK) and treatments with decreased precipitation in the dry season and extremely increased precipitation in the wet season (IE) and decreased precipitation in the dry season and proportionally increased precipitation in the wet season (IP) was conducted in a subtropical evergreen broad-leaved forest in China from October 2020 to October 2021. The moisture, microbial biomass, and extracellular enzyme activities of foliar litter from two dominant shrub species, Phyllostachys violascens and Alangium chinense, were measured at six stages during the dry and wet seasons. The results showed that (1) both IE and IP significantly decreased the microbial biomass carbon and microbial biomass nitrogen content and the activities of β-1,4-glucosidase, β-1,4-N-acetylglucosaminidase, acid phosphatase and cellulase in the dry season, while the opposite effects were observed in the wet season. (2) Compared with those of IE, the effects of IP on foliar litter microbial biomass and extracellular enzyme activity were more significant. (3) The results from the partial least squares model indicated that extracellular enzyme activity during foliar litter decomposition was strongly controlled by the foliar litter water content, microbial biomass nitrogen, the ratio of total carbon to total phosphorus, foliar litter total carbon, and foliar litter total nitrogen. These results provide an important theoretical basis for elucidating the microbial mechanisms driving litter decomposition in a subtropical forest under global climate change scenarios.

Phyllosphere fungal diversity generates pervasive nonadditive effects on plant performance.

Plants naturally harbor diverse microbiomes that can dramatically impact their health and productivity. However, it remains unclear how fungal microbiome diversity, especially in the phyllosphere, impacts intermicrobial interactions and consequent nonadditive effects on plant productivity. Combining manipulative experiments, field collections, culturing, microbiome sequencing, and synthetic consortia, we experimentally tested for the first time how foliar fungal community diversity impacts plant productivity. We inoculated morning glories (Ipomoea hederifolia L.) with 32 phyllosphere consortia of either low or high diversity or with single fungal taxa, and measured effects on plant productivity and allocation. We found the following: (1) nonadditive effects were pervasive with 56% of fungal consortia interacting synergistically or antagonistically to impact plant productivity, including some consortia capable of generating acute synergism (e.g. > 1000% increase in productivity above the additive expectation), (2) interactions among 'commensal' fungi were responsible for this nonadditivity in diverse consortia, (3) synergistic interactions were approximately four times stronger than antagonistic effects, (4) fungal diversity affected the magnitude but not frequency or direction of nonadditivity, and (5) diversity affected plant performance nonlinearly with the highest performance in low-diversity treatments. These findings highlight the importance of interpreting plant-microbiome interactions under a framework that incorporates intermicrobial interactions and nonadditive outcomes to understand natural complexity.

Effect of the mitochondrial membrane potential on the absorbance of the reduced form of cytochrome c oxidase

The effect of mitochondrial membrane potential (ΔΨm) on the absorbance of the reduced cytochrome c oxidase (COX) was evaluated in isolated rabbit heart mitochondria using integrating sphere optical spectroscopy. Maximal reduction of the mitochondrial cytochromes was achieved by either blowing nitrogen to remove oxygen, or by adding cyanide. Gradual depolarization of ΔΨm by adding increasing concentrations of uncoupler resulted in an increase of up to 50 % in the absorbance of cytochrome aa3 under nitrogen saturation, and of 25 % with cyanide. Cytochrome aa3 absorbance increases were also observed in the presence of cyanide with apyrase (20 %) or oligomycin (12 %). The bL heme absorbance also decreased as expected from ΔΨm depolarization. A ~ 1 nm red shift in the peak wavelength of cytochrome aa3 was observed under anoxic conditions as ΔΨm was depolarized. Importantly, cytochrome c and c1 absorbances remained constant at levels corresponding to full reduction under all experimental manipulations of ΔΨm, especially with cyanide. These data suggest that ΔΨm-dependent changes in the absorbance of reduced COX were due to a variable extinction coefficient of heme a and/or a3 as a function of ΔΨm. A similar increase in the reduced cytochrome aa3 absorbance without changes in cytochrome c and c1 was observed in the perfused rabbit heart when decreasing ΔΨm with uncoupler. Our results imply that COX absorbance in its fully reduced state does not simply reflect the oxygen tension but also the ΔΨm. This may prove useful in monitoring ΔΨm under anoxic or ischemic conditions in intact tissue.

Effects of microclimate on disease prevalence across an urbanization gradient.

Increased temperatures associated with urbanization (the "urban heat island" effect) have been shown to impact a wide range of traits across diverse taxa. At the same time, climatic conditions vary at fine spatial scales within habitats due to factors including shade from shrubs, trees, and built structures. Patches of shade may function as microclimate refugia that allow species to occur in habitats where high temperatures and/or exposure to ultraviolet radiation would otherwise be prohibitive. However, the importance of shaded microhabitats for interactions between species across urbanized landscapes remains poorly understood. Weedy plants and their foliar pathogens are a tractable system for studying how multiple scales of climatic variation influence infection prevalence. Powdery mildew pathogens are particularly well suited to this work, as these fungi can be visibly diagnosed on leaf surfaces. We studied the effects of shaded microclimates on rates of powdery mildew infection on Plantago host species in (1) "pandemic pivot" surveys in which undergraduate students recorded shade and infection status of thousands of plants along road verges in urban and suburban residential neighborhoods, (2) monthly surveys of plant populations in 22 parks along an urbanization gradient, and (3) a manipulative field experiment directly testing the effects of shade on the growth and transmission of powdery mildew. Together, our field survey results show strong positive effects of shade on mildew infection in wild Plantago populations across urban, suburban, and rural habitats. Our experiment suggests that this relationship is causal, where microclimate conditions associated with shade promote pathogen growth. Overall, infection prevalence increased with urbanization despite a negative association between urbanization and tree cover at the landscape scale. These findings highlight the importance of taking microclimate heterogeneity into account when establishing links between macroclimate or land use context and prevalence of disease.

Functional traits of predators and decomposer prey determine context dependency in trophic control over ecosystems.

Research Highlight: Piccoli, G. C. d. O., Antiqueira, P. A. P., Srivastava, D. S., & Romero, G. Q. (2024). Trophic cascades within and across ecosystems: The role of anti-predatory defences, predator type and detritus quality. Journal of Animal Ecology, 00, 1-14. https://doi.org/10.1111/1365-2656.14063. Ecosystem functioning is controlled by the interplay between bottom-up supply of limiting nutrients and top-down animal feedback effects. However, the degree of animal versus nutrient control is context-dependent. A key challenge lies in characterizing this context dependency which is hypothesized to depend on differences in animal functional traits. Reporting on an important experiment, Piccoli etal. (2014) evaluate how interactions among functionally different predators and decomposer prey create context dependency in top-down control of a model system-tropical bromeliad tank ecosystems. Bromeliad plants hold water in their tanks supporting microcosm ecosystems containing terrestrial and aquatic insect larvae and arachnids. The ecosystems are supported by nutrients in plant litter that rains down from forest canopies into the tanks. Nutrients are released after litter is decomposed by a functionally diverse community of larval insect decomposers that differ in feeding mode and antipredator defence strategy. This decomposer community is preyed upon by an exclusively narrowly ranging aquatic insect larval predator and widely ranging spider predator that crosses between the aquatic and surrounding terrestrial ecosystems. Experimental manipulation of the animal community to test for the degree of control by predators mediated by the functionally diverse prey community included four treatments: (i) a control with the detritivores composing different function groups but without predators, (ii) the cross-ecosystem spider predator added, (iii) the purely aquatic damselfly larvae predator added and (iv) both predator types added to capture their interacting effect on ecosystem function (decomposition, nutrient release, and plant growth). Notably, the study resolved the causal pathways and strengths of direct and indirect control using structural equation modelling. These findings reveal how context dependency arises due to different capacities of the predators alone and together to overcome prey defences and control their abundances, with attendant cascading effects that diminished as well as enhanced decomposition and nutrient release to support bromeliad plant production. The study reveals that predators have a decided, albeit qualitatively and quantitatively different, hand in shaping the degree of bottom-up control through feedback effect on the release of limiting nutrients. This ground-breaking study provides a way forward in understanding the mechanisms determining context dependency in the control over ecosystem functioning.

Experimental manipulation of food availability and macroparasite prevalence reveal differential effects on space use in wild rodents.

Research Highlight: Mistrick, J., Veitch, J. S. M., Kitchen, S. M., Clague, S., Newman, B. C., Hall, R. J., Budischak, S. A., Forbes, K. M., & Craft, M. E. (2024). Effects of food supplementation and helminth removal on space use and spatial overlap in wild rodent populations. Journal of Animal Ecology. http://doi.org/10.1111/1365-2656.14067. The spread of pathogens has been of long-standing interest, even before dramatic outbreaks of avian influenza and the coronavirus pandemic spiked broad public interest. However, the dynamics of pathogen spread in wild populations are complex, with multiple effects shaping where animals go (their space use), population density and, more fundamentally, the resultant patterns of contacts (direct or indirect) among individuals. Thus, experimental studies exploring the dynamics of contact under different sets of conditions are needed. In the current field study, Mistrick etal. (2024) used a multifactorial experimental design, manipulating food availability and individual pathogen infection state in wild bank voles (Clethrionomys glareolus). They found that while food availability, individual traits and seasonality can affect how far individual voles moved, the degree of overlap between individual voles remained largely the same despite a high variation in population density-which itself was affected by food availability. These results highlight how biotic and abiotic factors can shape patterns of space use and balance the level of spatial overlap through multiple pathways.

Divergent controlling factors of freeze–thaw-induced changes in dissolved organic carbon and microbial biomass carbon between topsoil and subsoil of cold alpine grasslands

Freeze-thaw (FT) processes in cold regions significantly influence the mineralization and sequestration of soil organic carbon (SOC), particularly in its active pools, such as dissolved organic carbon (DOC) and microbial biomass carbon (MBC). However, manipulation experiments often amplify the effects of natural FT processes and overlook soils below 20 cm depth. To investigate carbon responses to seasonal FT events across soil depths (0–80 cm) and identify controlling factors, field sampling was conducted before freezing and after thawing in alpine grassland soils on the Qinghai-Tibet Plateau. Results are as follows: 1) After soil thawing, the entire soil profile showed insignificant changes in SOC (−4.46%) and MBC (3.21%), but DOC (45.27%) and DOC/SOC (160.08%) increased significantly, and strong associations were observed in DOC changes between adjacent soil layers. 2) FT indicators (number and temperature amplitude of daily FT cycles, frozen temperature, and frozen days) influenced SOC changes differently in the topsoil (0–10 cm) and subsoil (20–30 cm). Contrary to the impact of frozen temperature, other FT indicators largely facilitated the production of DOC0–10 and DOC20–30. The effects of FT indicators on MBC were nonlinear. 3) Structural equation models indicated that average soil water governed FT-induced changes in both DOC0–10 and DOC20–30. The varying effects of porosity and pH from topsoil to subsoil, along with the weakening relationship between changes in DOC and MBC, favored a stronger increase in DOC20–30. Increases in soil water and DOC after thawing stimulated the increment of MBC0–10, while porosity (positively) and sand content (negatively) regulated the MBC20–30 change. It indicates that, influenced by soil structure and biogeochemical environment, DOC and MBC in grassland soils are more sensitive to natural FT processes than SOC. Nevertheless, changes in FT patterns due to long-term climate change may cumulatively affect SOC.

Exploring the Dynamics of Dark and Singular Solitons in Optical Fibers Using Extended Rational Sinh–Cosh and Sine–Cosine Methods

Exploring the Dynamics of Dark and Singular Solitons in Optical Fibers Using Extended Rational Sinh–Cosh and Sine–Cosine Methods

Value-based decision-making in regular alcohol consumers following experimental manipulation of alcohol value

BackgroundDevaluation of alcohol leads to reductions in alcohol choice and consumption; however, the cognitive mechanisms that underpin this relationship are not well-understood. In this study we applied a computational model of value-based decision-making (VBDM) to decisions made about alcohol and alcohol-unrelated cues following experimental manipulation of alcohol value. Method: Using a pre-registered within-subject design, thirty-six regular alcohol consumers (≥14 UK units per week) completed a two-alternative forced choice task where they chose between two alcohol images (in one block) or two soft drink images (in a different block) after watching videos that emphasised the positive (alcohol value), and separately, the negative (alcohol devalue) consequences of alcohol. On each block, participants pressed a key to select the image depicting the drink they would rather consume. A drift–diffusion model (DDM) was fitted to reaction time and choice data to estimate evidence accumulation (EA) processes and response thresholds during the different blocks in each experimental condition. Findings: In the alcohol devalue condition, soft drink EA rates were significantly higher compared to alcohol EA rates (p = 0.04, d = 0.31), and compared to soft drink EA rates in the alcohol value condition (p = 0.01, d = 0.38). However, EA rates for alcoholic drinks and response thresholds (for either drink type) were unaffected by the experimental manipulation. Conclusions: In line with behavioural economic models of addiction that emphasise the important role of alternative reinforcement, experimentally manipulating alcohol value is associated with changes in the internal cognitive processes that precede soft drink choice.