Habitat Expansion Research Articles

Evidence of increasing juvenile white sharks' (Carcharodon carcharias) habitat use at the Northern Channel Islands.

Juvenile white sharks (Carcharodon carcharias) typically aggregate along coastal beaches; however, high levels of recruitment and shifting oceanographic conditions may be causing habitat use expansions. Telemetry data indicate increased habitat use at the Northern Channel Islands (California, USA) by juvenile white shark that may be in response to increased population density at aggregation locations, or anomalous oceanographic events that impact habitat use or expand available habitat. Findings illustrate the need for long-term movement monitoring and understanding drivers of habitat use shifts and expansion to improve ecosystem management.

Prediction of Suitable Habitat Distribution of Cryptosphaeria pullmanensis in the World and China under Climate Change.

Years of outbreaks of woody canker (Cryptosphaeria pullmanensis) in the United States, Iran, and China have resulted in massive economic losses to biological forests and fruit trees. However, only limited information is available on their distribution, and their habitat requirements have not been well evaluated due to a lack of research. In recent years, scientists have utilized the MaxEnt model to estimate the effect of global temperature and specific environmental conditions on species distribution. Using occurrence and high resolution ecological data, we predicted the spatiotemporal distribution of C. pullmanensis under twelve climate change scenarios by applying the MaxEnt model. We identified climatic factors, geography, soil, and land cover that shape their distribution range and determined shifts in their habitat range. Then, we measured the suitable habitat area, the ratio of change in the area of suitable habitat, the expansion and shrinkage of maps under climate change, the direction and distance of range changes from the present to the end of the twenty-first century, and the effect of environmental variables. C. pullmanensis is mostly widespread in high-suitability regions in northwestern China, the majority of Iran, Afghanistan, and Turkey, northern Chile, southwestern Argentina, and the west coast of California in the United States. Under future climatic conditions, climate changes of varied intensities favored the expansion of suitable habitats for C. pullmanensis in China. However, appropriate land areas are diminishing globally. The trend in migration is toward latitudes and elevations that are higher. The estimated area of possible suitability shifted eastward in China. The results of the present study are valuable not only for countries such as Morocco, Spain, Chile, Turkey, Kazakhstan, etc., where the infection has not yet fully spread or been established, but also for nations where the species has been discovered. Authorities should take steps to reduce greenhouse gas emissions in order to restrict the spread of C. pullmanensis. Countries with highly appropriate locations should increase their surveillance, risk assessment, and response capabilities.

Africa as an evolutionary arena for large fruits.

Strong paleoclimatic change and few Late Quaternary megafauna extinctions make mainland Africa unique among continents. Here, we hypothesize that, compared with elsewhere, these conditions created the ecological opportunity for the macroevolution and geographic distribution of large fruits. We assembled global phylogenetic, distribution and fruit size data for palms (Arecaceae), a pantropical, vertebrate-dispersed family with > 2600 species, and integrated these with data on extinction-driven body size reduction in mammalian frugivore assemblages since the Late Quaternary. We applied evolutionary trait, linear and null models to identify the selective pressures that have shaped fruit sizes. We show that African palm lineages have evolved towards larger fruit sizes and exhibited faster trait evolutionary rates than lineages elsewhere. Furthermore, the global distribution of the largest palm fruits across species assemblages was explained by occurrence in Africa, especially under low canopies, and extant megafauna, but not by mammalian downsizing. These patterns strongly deviated from expectations under a null model of stochastic (Brownian motion) evolution. Our results suggest that Africa provided a distinct evolutionary arena for palm fruit size evolution. We argue that megafaunal abundance and the expansion of savanna habitat since the Miocene provided selective advantages for the persistence of African plants with large fruits.

Global spatial distribution of Chromolaena odorata habitat under climate change: random forest modeling of one of the 100 worst invasive alien species

Anthropogenic activities and global climate change increase the risk of Chromolaena odorata invasion and habitat expansion. To predict its global distribution and habitat suitability under climate change, a random forest (RF) model was employed. The RF model, utilizing default parameters, analyzed species presence data and background information. The model revealed that the current spatial distribution of C. odorata covers 7,892,447 km2. Predictions for 2061– 2080 indicate expansion of suitable habitat (42.59 and 46.30%), reduction of suitable habit (12.92 and 12.20%), and preservation of suitable habitat (87.08 and 87.80%) under the SSP (Shared Socio-economic Pathway) 2-4.5 and SSP5-8.5 scenarios, respectively, in comparison to the present distribution. Currently, C. odorata is predominantly found in South America, with limited presence in other continents. However, the data suggest that climate change will elevate the global invasion risk of C. odorata worldwide, particularly in Oceania, Africa, and Australia. Countries such as Gambia, Guinea-Bissau, and Lesotho, which currently have unsuitable habitats, are predicted to have highly suitable habitats with climate change, supporting the idea that global habitat expansion for C. odorata will occur due to climate change. This study indicates that proper management of C. odorata is crucial during the early invasion phase.

A review of the late Cenozoic genus Bohra (Diprotodontia: Macropodidae) and the evolution of tree-kangaroos.

Tree-kangaroos of the genus Dendrolagus occupy forest habitats of New Guinea and extreme northeastern Australia, but their evolutionary history is poorly known. Descriptions in the 2000s of near-complete Pleistocene skeletons belonging to larger-bodied species in the now-extinct genus Bohra broadened our understanding of morphological variation in the group and have since helped us to identify unassigned fossils in museum collections, as well as to reassign species previously placed in other genera. Here we describe these fossils and analyse tree-kangaroo systematics via comparative osteology. Including B. planei sp. nov., B. bandharr comb. nov. and B. bila comb. nov., we recognise the existence of at least seven late Cenozoic species of Bohra, with a maximum of three in any one assemblage. All tree-kangaroos (Dendrolagina subtribe nov.) exhibit skeletal adaptations reflective of greater joint flexibility and manoeuvrability, particularly in the hindlimb, compared with other macropodids. The Pliocene species of Bohra retained the stepped calcaneocuboid articulation characteristic of ground-dwelling macropodids, but this became smoothed to allow greater hindfoot rotation in the later species of Bohra and in Dendrolagus. Tree-kangaroo diversification may have been tied to the expansion of forest habitats in the early Pliocene. Following the onset of late Pliocene aridity, some tree-kangaroo species took advantage of the consequent spread of more open habitats, becoming among the largest late Cenozoic tree-dwellers on the continent. Arboreal Old World primates and late Quaternary lemurs may be the closest ecological analogues to the species of Bohra.

Predicting the potential impacts of climate change on the endangered endemic annonaceae species in east africa

Globally, endemic species and natural habitats have been significantly impacted by climate change, and further considerable impacts are predicted. Therefore, understanding how endemic species are impacted by climate change can aid in advancing the necessary conservation initiatives. The use of niche modeling is becoming a popular topic in biological conservation to forecast changes in species distributions under various climate change scenarios. This study used the Australian Community Climate and Earth System Simulator version 1 (ACCESS-CM2) general circulation model of coupled model intercomparison project phase 6 (CMIP6) to model the current distribution of suitable habitat for the four threatened Annonaceae species endemic to East Africa (EA), to determine the impact of climate change on their suitable habitat in the years 2050 (average for 2041–2060) and 2070 (average for 2061–2080). Two shared socio-economic pathways (SSPs) SSP370 and SSP585 were used to project the contraction and expansion of suitable habitats for Uvariodendron kirkii, Uvaria kirkii, Uvariodendron dzomboense and Asteranthe asterias endemic to Kenya and Tanzania in EA. The current distribution for all four species is highly influenced by precipitation, temperature, and environmental factors (population, potential evapotranspiration, and aridity index). Although the loss of the original suitable habitat is anticipated to be significant, appropriate habitat expansion and contraction are projections for all species. More than 70% and 40% of the original habitats of Uvariodendron dzombense and Uvariodendron kirkii are predicted to be destroyed by climate change, respectively. Based on our research, we suggest that areas that are expected to shrink owing to climate change be classified as important protection zones for the preservation of Annonaceae species.

Challenges, successes, and recommendations for management of coastal sandplain grasslands as regional biodiversity hotspots in the northeastern United States

A high proportion of regional plant biodiversity occurs in hotspots of species richness that cover small areas created and maintained by disturbance. Sustaining plant diversity in these areas requires region‐ and habitat‐specific management of disturbance and, increasingly, habitat expansion or restoration to offset species losses. Coastal sandplain grasslands are threatened, disturbance‐controlled plant biodiversity hotspots in the northeastern United States. We formed a network of grassland managers and scientists to review the published and unpublished sandplain grassland literature. Additionally, we conducted interviews with grassland managers about management challenges and successes. Principal concerns of managers were increases in woody plant cover, losses of rare species, increased cover and variety of invasive species, and constraints on the ability to use prescribed fire. The literature review and managers' experiences together led to the following recommendations: (1) increase applications of prescribed burning and mowing during the growing season when possible; (2) expand selective removal of woody plants including herbicide use; (3) test the application of harrowing or disking to reduce woody plant density especially in places where invasive plant densities are low; and (4) increase applications of combinations of disturbances in rotations with occasional fire. At regional scales, monitoring of management effects, identification of parcels for potential grassland expansion and restoration, and increased supplies of native seeds of plant ecotypes to use for restoration ahead of climate change are badly needed. Formation of networks of managers and scientists to share information and experiences has the potential to greatly improve land management within other biodiversity hotspots.

Architectural Renovation of Industrial Buildings on the Example of Large Cities of Kazakhstan

The realities of the modern city dictate the conditions for the expansion of human habitats. A number of industrial buildings erected in the last century occupies large territories, often in the center of cities. This causes environmental and aesthetic problems. In the historical centers of large cities of Kazakhstan, the problem of industrial zones renovation is especial urgent. At the same time, it is necessary to consider the economic feasibility of such activities, their profitability, and ways to preserve the architectural ensemble of historical buildings. Moreover, one of the fundamental factors is the psychological component, that is, the need to preserver the history of industrial buildings. At the same time, it is necessary to modernize and renovate enterprises, move production out of the city, and preserve existing buildings, changing their function to a more relevant one, while forming a unique ecosystem. To resolve this issue, a government program of Kazakhstan was considered, which in every possible way contributes to the renovation policy. However, for its optimal implementation, it is necessary to consider economic aspects, select the best ways and methods of renovation, and also study foreign experience, critically compare it with domestic renovation projects and formulate recommendations necessary for the renovation of industrial buildings.

Electrochemical Detection of Borrelia burgdorferi Using a Biomimetic Flow Cell System.

Lyme disease, caused by infection with pathogenic Borrelia bacteria, has emerged as a pervasive illness throughout North America and many other regions of the world in recent years, owing in part to climate-mediated habitat expansion of the tick vectors. Standard diagnostic testing has remained largely unchanged over the past several decades and is indirect, relying on detection of antibodies against the Borrelia pathogen, rather than detection of the pathogen itself. The development of new rapid, point-of-care tests for Lyme disease that directly detects the pathogen could drastically improve patient health by enabling faster and more frequent testing that could better inform patient treatment. Here, we describe a proof-of-concept electrochemical sensing approach to the detection of the Lyme disease-causing bacteria, which utilizes a biomimetic electrode to interact with the Borrelia bacteria that induce impedance alterations. In addition, the catch-bond mechanism between bacterial BBK32 protein and human fibronectin protein, which exhibits improved bond strength with increased tensile force, is tested within an electrochemical injection flow-cell to achieve Borrelia detection under shear stress.

Evolution of family Arecaceae on the Indian Plate modulated by the Early Palaeogene climate and tectonics

Arecaceae (palms) is a pantropical plant family with an ancient origin. It shows distinct spatial patterns of species richness in tropical regions having greatest diversity within the Neotropical regions and Southeast Asia. The wider palaeobiogeographic records of palms in relation to current distribution requires a re–examination of their palaeobiogeographic history. The present study reports eleven fossil pollen form–species from the early Palaeogene of India, enhancing our understanding of the evolution of four palm subfamilies: Arecoideae, Calamoideae, Coryphoideae and Nypoideae, on the Indian Plate prior to the India–Asia collision. We suggest the dispersal of diverse palms from Africa to India via the Kohistan– Ladakh Island Arc during Maastrichtian–Palaeocene as part of the Africa–India Floristic Interchange. Subsequently, with wet and humid climates across much of the Indian Plate during the Palaeocene–early Eocene, they underwent a phase of diversification and adaptation leading to habitat expansion. Thus, Indian Plate served as an evolutionary hotspot for the diversification of palms during the early Palaeogene. An in–depth investigation of Palaeogene palm fossils revealed that many palms, currently endemic to Southeast Asia, initially evolved and diversified on the Indian Plate and later dispersed to Southeast Asia following India–Asia collision. The present study thus favours the “Out–of–India” dispersal hypothesis for the Asian palms. The expansion of seasonal climates, and aridification during Neogene and Quaternary led extinction in numerous palm lineages on the Indian subcontinent. This study proposes that deep time climate change and plate tectonism have highly influenced the heterogeneity in spatial and temporal distribution of Asian palms.

Environmental drivers inducing habitat expansion and shift of introduced alien trout in the Himalayan ecosystem and management concerns

There is a concern of the spread of introduced trout Salmo trutta and Oncorhynchus mykiss which might have potential effects on native fish species in the Himalaya. We present the first assessment of current habitat expansion of introduced trout induced by environmental drivers and posing threats to the local fish diversity. Maximum Entropy (MaxEnt) model was used and overlaid with presence-only data onto bioclimatic and environmental layers to characterize the conditions most suitable for the habitat expansion of trout. Mean AUC value for S. trutta was 0.919 and 0.881 for O. mykiss respectively showing that the MaxEnt model was highly accurate and statistically significant. The precipitation of driest quarter (Bio_17) alone accounted for 71.4% habitat expansion of S. trutta across rivers’ length and 61.1% in the case of O. mykiss. The Jackknife test of different environmental variable particularly Bio_17 and the coldest quarter (Bio_19) depicted their potential role in habitat expansion. The occurrences of trout in the Himalayan streams predicted trade-offs between few environmental variables and habitat expansion. The findings suggested that habitat expansion of trout was induced by identified environmental drivers impacting the array of biological and ecological integrity in the new geographic spaces concerning trout invasion.

Addressing the impact of canine distemper spreading on an isolated tiger population in northeast Asia.

The continuation of the isolated Amur tiger (Panthera tigris altaica) population living along the China-Russia border is facing serious challenges due to factors such as its small size (including 38 individuals) and canine distemper virus (CDV). We use a population viability analysis metamodel, which consists of a traditional individual-based demographic model linked to an epidemiological model, to assess options for controlling the impact of negative factors through domestic dog management in protected areas, increasing connectivity to the neighboring large population (including more than 400 individuals), and habitat expansion. Without intervention, under inbreeding depression of 3.14, 6.29, and 12.26 lethal equivalents, our metamodel predicted the extinction within 100 years is 64.4%, 90.6%, and 99.8%, respectively. In addition, the simulation results showed that dog management or habitat expansion independently will not ensure tiger population viability for the next 100 years, and connectivity to the neighboring population would only keep the population size from rapidly declining. However, when the above three conservation scenarios are combined, even at the highest level of 12.26 lethal equivalents inbreeding depression, population size will not decline and the probability of extinction will be <5.8%. Our findings highlight that protecting the Amur tiger necessitates a multifaceted synergistic effort. Our key management recommendations for this population underline the importance of reducing CDV threats and expanding tiger occupancy to its former range in China, but re-establishing habitat connectivity to the neighboring population is an important long-term objective.

The Pandemic Puzzle—Reviewing the Existing Pieces, Searching for the Missing Ones

The research carried out on socioeconomic implication models of (re)emerging infectious diseases triggering pandemics has shown us that these largely depended on infection transmission, conditioned by the type of pathogen and the human host. Also, these depended on certain external factors, such as the phenomenon of globalization, pollution, fragile health systems, modification of human behaviors, expansion of human habitat near the outbreaks, favorable vectors involved in the transmission and development of new pandemics and last but not least of wars or civil revolts. The present research attempts to provide some responses to the following questions: 1. What have been the most recent and important emerging infectious disease pandemics and what were the risk factors? 2. What was the socioeconomic impact generated by these pandemics and what important lessons did we learn/identify? 3. What measures and/or directions must be implemented/addressed to prevent/possibly stop a future wave of infections or a new pandemic? The answers to these questions are substantiated by different indicators (transmission potential and pathogen severity) through which we focused to offer some suggestions/directions regarding the way in which these pandemics could be anticipated or prevent, indicators that otherwise are already used by public authorities in the development and exploration of intervention strategies. However, through the elaboration and staged presentation of how these pandemics acted as well as the socioeconomic implications and human reactions, this research could be useful in leading to the development of new, effective ways to prevent the transmission of (re)emerging infectious diseases.

The Forest of Biologists - for biologists, for biology.

The Forest of Biologists - for biologists, for biology.

The Forest of Biologists - for biologists, for biology.

The Forest of Biologists - for biologists, for biology.

Urchin Gonad Response to Kelp Forest Restoration on the Palos Verdes Peninsula, California

Along the Palos Verdes Peninsula in southern California, high densities of Strongylocentrotus purpuratus (purple sea urchin) have consumed almost all macroalgae on large expanses (61 ha) of rocky reef habitat, creating “urchin barrens.” Mesocentrotus franciscanus (red sea urchin) harvesting comprises an important fishery in the region, as their gonads are sold as a high-value sushi product called “uni.” However, with a lack of macroalgal food resources, urchins in barrens are smaller and exist in a starved state, meaning little, if any, gonad product is available to the fishery. To restore local kelp forests and increase gonad biomass available to the M. franciscanus fishery, beginning in October 2013, S. purpuratus were culled in barrens to a target density of 2 per m2 across 5.2 ha of rocky reef on the Palos Verdes Peninsula. Mesocentrotus franciscanus were collected from urchin barren, restoration, and kelp reference sites from April to November 2014 to compare differences in gonad production among the three site types. Culling S. purpuratus resulted in the recovery of normal seasonal M. franciscanus gonad production throughout the 8-month study. Mesocentrotus franciscanus gonad weights at a given test diameter length in restoration sites were equivalent to, and sometimes exceeded, the gonad production of those from the kelp reference sites. The urchin test length distributions of collected M. franciscanus were consistently smaller at urchin barren sites than at kelp reference sites, while those in restoration sites generally fell in between.

Comparative Mitogenome Analyses Uncover Mitogenome Features and Phylogenetic Implications of the Parrotfishes (Perciformes: Scaridae).

In order to investigate the molecular evolution of mitogenomes among the family Scaridae, the complete mitogenome sequences of twelve parrotfish species were determined and compared with those of seven other parrotfish species. The comparative analysis revealed that the general features and organization of the mitogenome were similar among the 19 parrotfish species. The base composition was similar among the parrotfishes, with the exception of the genus Calotomus, which exhibited an unusual negative AT skew in the whole mitogenome. The PCGs showed similar codon usage, and all of them underwent a strong purifying selection. The gene rearrangement typical of the parrotfishes was detected, with the tRNAMet inserted between the tRNAIle and tRNAGln, and the tRNAGln was followed by a putative tRNAMet pseudogene. The parrotfish mitogenomes displayed conserved gene overlaps and secondary structure in most tRNA genes, while the non-coding intergenic spacers varied among species. Phylogenetic analysis based on the thirteen PCGs and two rRNAs strongly supported the hypothesis that the parrotfishes could be subdivided into two clades with distinct ecological adaptations. The early divergence of the sea grass and coral reef clades occurred in the late Oligocene, probably related to the expansion of sea grass habitat. Later diversification within the coral reef clade could be dated back to the Miocene, likely associated with the geomorphology alternation since the closing of the Tethys Ocean. This work provided fundamental molecular data that will be useful for species identification, conservation, and further studies on the evolution of parrotfishes.

Species Richness of Papilionidae Butterflies (Lepidoptera: Papilionoidea) in the Hengduan Mountains and Its Future Shifts under Climate Change.

The family of Papilionidae (Lepidoptera: Papilionoidea) is a group of butterflies with high ecological and conservation value. The Hengduan Mountains (HMDs) in Southwest China is an important diversity centre for these butterflies. However, the spatial distribution pattern and the climate vulnerability of Papilionidae butterflies in the HDMs remain unknown to date. The lack of such knowledge has already become an obstacle in formulating effective butterfly conservation strategies. The present research compiled a 59-species dataset with 1938 occurrence points. The Maxent model was applied to analyse the spatial pattern of species richness in subfamilies Parnassiinae and Papilioninae, as well as to predict the response under the influence of climate change. The spatial pattern of both subfamilies in the HDMs has obvious elevation prevalence, with Parnassiinae concentrated in the subalpine to alpine areas (2500-5500 m) in western Sichuan, northwestern Yunnan and eastern Tibet, while Papilioninae is concentrated in the low- to medium-elevation areas (1500-3500 m) in the river valleys of western Yunnan and western Sichuan. Under the influence of climate change, both subfamilies would exhibit northward and upward range shifts. The majority of Parnassiinae species would experience drastic habitat contraction, resulting in lower species richness across the HDMs. In contrast, most Papilioninae species would experience habitat expansion, and the species richness would also increase significantly. The findings of this research should provide new insights and a clue for butterfly diversity and climatic vulnerability in southwestern China. Future conservation efforts should be focused on species with habitat contraction, narrow-ranged distribution and endemicity with both in situ and ex situ measures, especially in protected areas. Commercialised collecting targeting these species must also be regulated by future legislation.

A comparison of methods for estimating juvenile salmon habitat capacity to assist with restoration planning and evaluation

AbstractObjectiveA variety of analytical approaches have been developed in recent years to estimate salmon Oncorhynchus spp. freshwater habitat capacity to assist with planning and evaluating habitat restoration. We compared and contrasted seven different methods for estimating juvenile Chinook Salmon O. tshawytscha habitat rearing capacity (total number of fish that a given area of habitat can support), abundance, and habitat suitability in a 3.2‐km reach of the Grande Ronde River, Oregon.MethodsThis included approaches that used statistical methodologies applied to existing empirical data sets, including quantile random forests (QRFs) and spatial stream networks (i.e., Fish Data Analysis Tool [FDAT]), and deterministic models that included the habitat suitability index, the unit characteristic method (UCM), and three habitat expansion methods.ResultWe hypothesized that the methods would provide comparable estimates. However, the approaches provided very divergent estimates for the same stream reach, ranging from 1048 to 24,530 juvenile Chinook Salmon. The simple habitat expansion methods appeared to be the most similar to the actual parr (juvenile) abundance obtained from recent snorkel surveys (4179 juveniles). The fish density data (fish/m2) and habitat data used in the models were likely the main drivers of the differences between the UCM and habitat expansion methods.ConclusionThe habitat expansion approaches, which are based on detailed habitat surveys, appear to be particularly suitable for estimating capacity within a reach; thus, they may be suitable for evaluating changes due to habitat restoration. The model‐based approaches (QRF and FDAT) appear to yield coarser estimates, in part because they use various inputs at the reach and landscape scales. As such, they are more useful for relative comparisons among reaches in watersheds to assist with watershed‐scale restoration planning and prioritization. Because all of the methods rely on fish density in different types of habitats, regional or local data on fish densities would improve their accuracy.

The Forest of Biologists – for biologists, for biology

The Forest of Biologists – for biologists, for biology