A novel ion exchange process combined with selective electrodialysis (SED) process has been demonstrated to not only efficiently recover low concentration rare-earth elements (REEs) and separate hydrochloric acid, but also significantly reduce membrane fouling. Two resins with different functional groups were selected for pretreatment and recovery of Y3+ from Y rare-earth oxalic precipitation (Y REOP) mother liquor. CH-93 resin showed a Y recovery rate of over 94 %, and the Y recovery efficiency remained above 90 % after 5 cycles. The mother liquor treated with resin (R-T) and the untreated mother liquor (W-R-T) were subjected to acid separation via SED, and membrane fouling was systematically evaluated. Compared with W-R-T group, the hydrochloric acid recovery efficiency of R-T group increased by 21.01 % (12 V), and the unit energy consumption decreased by 54.30 % (12 V). The results of 3D fluorescence excitation-emission matrix (3D-EEM) and fluorescent region integration (FRI) showed the dissolved organic matter (DOM) on AEM and CEM in R-T group both decreased by >45 %. The AEM of W-R-T group showed the highest fluorescence intensity ratio in V region (36 %), indicating humic acid-like substances were the main cause of AEM fouling. Generally, this study provides a new approach for the resource utilization of REOP mother liquor.