Evolutionary Timescales Research Articles

Element abundances of galactic RGB stars in the APO-K2 catalogue

Aims. We conducted an investigation on the chemical abundances of 4316 stars in the red giant branch (RGB) phase from the recently released APO-K2 catalogue. Our aim was to characterize the abundance trends of the single elements with [α/Fe], mainly focusing on C, N, and O, which are the most relevant for the estimation of stellar ages. Methods. The chemical analysis of the RGB sample involved cross-matching data from the APO-K2 catalogue with individual element abundances from APOGEE DR17. Results. The analysis detected a statistically significant difference in the [(C+N+O)/Fe]–[α/Fe] trend with respect to the simple α-enhancement scenario. This difference remained robust across different choices for the reference solar mixture and potential zero-point calibrations of C and N abundances. The primary discrepancy was a steeper increase in [O/Fe] with [α/Fe], reaching a 0.1 dex difference at [α/Fe] = 0.3. Notably, the impact on the evolutionary timescale of such oxygen over-abundance with respect to the commonly adopted uniform α-enhancement is rather limited. We verified that stellar models computed using an ad hoc O-rich mixture sped up the evolution by only 1% at [α/Fe] = 0.3, due to the counterbalancing effects of O enrichment on both the evolutionary timescale and the Z-to-[Fe/H] relationship.

The Paradox of Predictability Provides a Bridge Between Micro- and Macroevolution.

The relationship between the evolutionary dynamics observed in contemporary populations (microevolution) and evolution on timescales of millions of years (macroevolution) has been a topic of considerable debate. Historically, this debate centers on inconsistencies between microevolutionary processes and macroevolutionary patterns. Here, we characterize a striking exception: emerging evidence indicates that standing variation in contemporary populations and macroevolutionary rates of phenotypic divergence are often positively correlated. This apparent consistency between micro- and macroevolution is paradoxical because it contradicts our previous understanding of phenotypic evolution and is so far unexplained. Here, we explore the prospects for bridging evolutionary timescales through an examination of this "paradox of predictability." We begin by explaining why the divergence-variance correlation is a paradox, followed by data analysis to show that the correlation is a general phenomenon across a broad range of temporal scales, from a few generations to tens of millions of years. Then we review complementary approaches from quantitative-genetics, comparative morphology, evo-devo, and paleontology to argue that they can help to address the paradox from the shared vantage point of recent work on evolvability. In conclusion, we recommend a methodological orientation that combines different kinds of short-term and long-term data using multiple analytical frameworks in an interdisciplinary research program. Such a program will increase our general understanding about how evolution works within and across timescales.

Prevalent Fast Evolution of Genes Involved in Heterochromatin Functions.

Heterochromatin is a gene-poor and repeat-rich genomic compartment universally found in eukaryotes. Despite its low transcriptional activity, heterochromatin plays important roles in maintaining genome stability, organizing chromosomes, and suppressing transposable elements. Given the importance of these functions, it is expected that genes involved in heterochromatin regulation would be highly conserved. Yet, a handful of these genes were found to evolve rapidly. To investigate whether these previous findings are anecdotal or general to genes modulating heterochromatin, we compile an exhaustive list of 106 candidate genes involved in heterochromatin functions and investigate their evolution over short and long evolutionary time scales in Drosophila. Our analyses find that these genes exhibit significantly more frequent evolutionary changes, both in the forms of amino acid substitutions and gene copy number change, when compared to genes involved in Polycomb-based repressive chromatin. While positive selection drives amino acid changes within both structured domains with diverse functions and intrinsically disordered regions, purifying selection may have maintained the proportions of intrinsically disordered regions of these proteins. Together with the observed negative associations between the evolutionary rate of these genes and the genomic abundance of transposable elements, we propose an evolutionary model where the fast evolution of genes involved in heterochromatin functions is an inevitable outcome of the unique functional roles of heterochromatin, while the rapid evolution of transposable elements may be an effect rather than cause. Our study provides an important global view of the evolution of genes involved in this critical cellular domain and provides insights into the factors driving the distinctive evolution of heterochromatin.

Giant molecular clouds and their type classification in M 74: Toward understanding star formation and cloud evolution

Abstract We investigated the giant molecular clouds (GMCs) in M 74 (NGC 628), using data obtained from the PHANGS (Physics at High Angular resolution in Nearby GalaxieS) project. We applied GMC types according to the activity of star formation: Type I without star formation, Type II with H$\alpha$ luminosity ($L_{\mathrm{H\alpha }}$) less than $10^{37.5}\ \rm{erg\ s ^{-1}}$, and Type III with $L_{\mathrm{H\alpha }}$ greater than $10^{37.5}\ \rm{erg\ s^{-1}}$. A total of 432 GMCs were identified, with 59, 201, and 172 GMCs, for Types I, II, and III, respectively. The size and mass of the GMCs range from 23 to 238 pc and $10^{4.9}$ to $10^{7.1}\, M_{\odot }$, indicating that the mass and radius increase from Types I to III. Clusters younger than 4 Myr and H ii regions are concentrated within 150 pc of a GMC, indicating a tight association between these young objects and GMCs. The virial ratio decreases from Type I to Type III, indicating that Type III GMCs are the most gravitationally relaxed among the three. We interpret that the GMCs evolve from Type I to Type III, as previously observed in the Large Magellanic Cloud. Based on a steady-state assumption, the estimated evolutionary timescales of Types I, II, and III are 1, 5, and 4 Myr, respectively. We assume that the timescale of Type III is equal to the age of the associated clusters, indicating a GMC lifetime of 10 Myr or longer. Although Chevance et al. (2020, MNRAS, 493, 2872) investigated GMCs using the same PHANGS dataset of M 74, they did not define a GMC, reaching an evolutionary picture with a 20 Myr duration of the non-star-forming phase, which is five times longer than 4 Myr. We compare the present results with those of Chevance et al. (2020, MNRAS, 493, 2872) and argue that defining individual GMCs is essential for understanding GMC evolution.

Formation of carbonyl sulfide (OCS) via SH radicals in interstellar CO-rich ice under dense cloud conditions

Carbonyl sulfide (OCS) is widely observed in the gas phase toward star-forming regions and was the first of the only two sulfur-bearing species to be detected in interstellar ices so far. However, the chemical network governing its formation is still not fully understood. While the sulfurization of CO and the oxidation of CS are often invoked to form OCS other mechanisms could have a significant contribution. In particular, the multistep reaction involving CO and SH is a good candidate for forming a significant portion of the OCS in dense cloud environments. We aim to constrain the viability of the $ CO SH $ route for forming solid OCS in the interstellar medium, in a similar manner as $ CO OH $ is known to produce CO2 ice. This is achieved by conducting a systematic laboratory investigation of the targeted reactions on interstellar ice analogs under dense cloud conditions. We used an ultrahigh vacuum chamber to simultaneously deposit CO H2S and atomic H at 10 K. SH radicals produced in situ via hydrogen abstraction from H2S reacted with CO to form OCS . We monitored the ice composition during deposition and subsequent warm-up by means of Fourier-transform reflection absorption infrared spectroscopy (RAIRS). Complementarily, desorbed species were recorded with a quadrupole mass spectrometer (QMS) during temperature-programmed desorption (TPD) experiments. Control experiments were performed to secure the product identification. We also explored the effect of different H2S CO mixing ratios---with decreasing H2S concentrations---on the OCS formation yield. OCS is efficiently formed through surface reactions involving CO H2S and H atoms. The suggested underlying mechanism behind OCS formation is $ CO SH HSCO $ followed by $ HSCO H OCS H2 $. The OCS yield reduces slowly, but remains significant with increasing CO H2S mixing ratios ( CO H2S = 1:1, 5:1, 10:1, and 20:1). Our experiments provide unambiguous evidence that OCS can be formed from $ CO SH $ in the presence of H atoms. This route remains efficient for large H2S dilutions ($5<!PCT!>$ with respect to CO ), suggesting that it is a viable mechanism in interstellar ices. Given that SH radicals can be created in clouds over a wide evolutionary timescale, this mechanism could make a non-negligible contribution to the formation of interstellar OCS ice.

How bipedalism shapes humans' actions with hand tools.

The task for an embodied cognitive understanding of humans' actions with tools is to elucidate how the human body, as a whole, supports the perception of affordances and dexterous action with objects in relation to other objects. Here, we focus on the relationship between humans' actions with handheld tools and bipedal posture. Posture plays a pivotal role in shaping animals' perception and action dynamics. While humans stand and locomote bipedally, other primates predominantly employ quadrupedal postures and locomotion, relying on both hands and feet to support the body. Drawing upon evidence from evolutionary biology, developmental psychology and performance studies, we elucidate the influence of bipedalism on our actions with objects and on our proficiency in using tools. We use the metaphor of cascades to capture the dynamic, nonlinear transformations in morphology and behaviour associated with posture and the use of tools across evolutionary and developmental timescales. Recent work illustrates the promise of multifractal cascade analysis to reveal nonlinear, cross-scale interactions across the entire body in real-time, supporting the perception of affordances for actions with tools. Cascade analysis enriches our comprehension of real-time performance and facilitates exploration of the relationships among whole-body coordination, individual development, and evolutionary processes.This article is part of the theme issue 'Minds in movement: embodied cognition in the age of artificial intelligence'.

Update on the 53Mn-53Cr ages of dolomite in the Ivuna CI chondrite and asteroid Ryugu sample

Aqueous alteration in planetesimals is one of the earliest geological processes in the solar system. The timing of aqueous alteration sheds light on the timescale of material evolution through water–rock interaction in small bodies. The 53Mn-53Cr decay system, where a short-lived radionuclide 53Mn decays to 53Cr with a half-life of 3.7 Myr, is a powerful tool for dating carbonates in primitive meteorites that formed during aqueous alteration. In CI chondrites and samples returned from asteroid Ryugu, a major carbonate mineral is dolomite (CaMg(CO3)2) and could be dated precisely because of their relatively high Mn abundances. However, the lack of a proper dolomite standard for secondary ion mass spectrometry (SIMS) hinders us from obtaining accurate Mn/Cr ratios of carbonates, resulting in erroneous formation ages. In this work, we synthesized Mn-, Cr-, and Fe-bearing crystalline dolomite as standard materials and evaluated the relative sensitivity factor (RSF) of Mn/Cr for SIMS analysis, namely, the ratio of Mn/Cr obtained using SIMS to true Mn/Cr. We found that the RSF values of the dolomite standards range from 0.8 to 0.9, slightly higher than that of calcite (CaCO3) (∼0.7), and increase with their Fe contents. We used the newly evaluated RSF values to date dolomite in the Ivuna CI chondrite and obtained an initial 53Mn/55Mn ratio of (3.95 ± 0.49) × 10−6 (95 % confidence interval) and the corresponding absolute age of 4564.0 + 0.6/−0.7 Ma. Our new initial 53Mn/55Mn ratio is 26 ± 19 % higher than that obtained by a previous study for the same dolomite grain using a calcite standard. This difference is consistent with the difference between the RSF values of dolomite and calcite. Based on these results, we updated the initial 53Mn/55Mn ratio previously reported for dolomite in the Ryugu sample A0058 to be (3.21 ± 0.66) × 10−6, which corresponds to an absolute age of 4562.8 + 1.0/−1.2 Ma. This age seems to be the best estimate for the formation age of dolomite in Ryugu currently available.

Structure of a fully assembled γδ T cell antigen receptor

T cells in jawed vertebrates comprise two lineages, αβ T cells and γδ T cells, defined by the antigen receptors they express—that is, αβ and γδ T cell receptors (TCRs), respectively. The two lineages have different immunological roles, requiring that γδ TCRs recognize more structurally diverse ligands1. Nevertheless, the receptors use shared CD3 subunits to initiate signalling. Whereas the structural organization of αβ TCRs is understood2,3, the architecture of γδ TCRs is unknown. Here, we used cryogenic electron microscopy to determine the structure of a fully assembled, MR1-reactive, human Vγ8Vδ3 TCR–CD3δγε2ζ2 complex bound by anti-CD3ε antibody Fab fragments4,5. The arrangement of CD3 subunits in γδ and αβ TCRs is conserved and, although the transmembrane α-helices of the TCR-γδ and -αβ subunits differ markedly in sequence, packing of the eight transmembrane-helix bundles is similar. However, in contrast to the apparently rigid αβ TCR2,3,6, the γδ TCR exhibits considerable conformational heterogeneity owing to the ligand-binding TCR-γδ subunits being tethered to the CD3 subunits by their transmembrane regions only. Reducing this conformational heterogeneity by transfer of the Vγ8Vδ3 TCR variable domains to an αβ TCR enhanced receptor signalling, suggesting that γδ TCR organization reflects a compromise between efficient signalling and the ability to engage structurally diverse ligands. Our findings reveal the marked structural plasticity of the TCR on evolutionary timescales, and recast it as a highly versatile receptor capable of initiating signalling as either a rigid or flexible structure.

Annelid Comparative Genomics and the Evolution of Massive Lineage-Specific Genome Rearrangement in Bilaterians.

The organization of genomes into chromosomes is critical for processes such as genetic recombination, environmental adaptation, and speciation. All animals with bilateral symmetry inherited a genome structure from their last common ancestor that has been highly conserved in some taxa but seemingly unconstrained in others. However, the evolutionary forces driving these differences and the processes by which they emerge have remained largely uncharacterized. Here, we analyze genome organization across the phylum Annelida using 23 chromosome-level annelid genomes. We find that while many annelid lineages have maintained the conserved bilaterian genome structure, the Clitellata, a group containing leeches and earthworms, possesses completely scrambled genomes. We develop a rearrangement index to quantify the extent of genome structure evolution and show that, compared to the last common ancestor of bilaterians, leeches and earthworms have among the most highly rearranged genomes of any currently sampled species. We further show that bilaterian genomes can be classified into two distinct categories-high and low rearrangement-largely influenced by the presence or absence, respectively, of chromosome fission events. Our findings demonstrate that animal genome structure can be highly variable within a phylum and reveal that genome rearrangement can occur both in a gradual, stepwise fashion, or rapid, all-encompassing changes over short evolutionary timescales.

53Mn-53Cr chronometry of ureilites: Implications for the timing of parent body accretion, differentiation and secondary reduction

Establishing the temporal evolution of the ureilite parent body(ies) is crucial for understanding the quantitative timescale of planetesimal formation and evolution in the protoplanetary disk. In order to establish a timeline for these early processes, age constraints on the accretion, differentiation and secondary reduction were obtained with the short-lived 53Mn-53Cr chronometer to whole-rock and sequentially digested fractions of main group ureilites. A whole-rock isochron dates the reservoir-scale Mn-Cr fractionation in the ureilite parent body(ies), associated with magmatic differentiation, to 2.89-0.51+0.56 Ma after CAI formation. This age implies that the ureilite parent body(ies) accreted no later than ∼1.5 Ma after CAI formation, at a time when the NC-CC dichotomy was already established. The 53Mn-53Cr systematics of fractions from chromite-bearing ureilites yield an age of 4.29-0.45+0.49 Ma after CAI formation for a secondary reduction event on the parent body. This event is commonly associated with the catastrophic disruption of the ureilite parent body while still hot. The chromite model ages are consistent with the isochron ages obtained from chromite-bearing ureilites. Collectively these ages indicate that chemical differentiation processes were underway on the ureilite parent body(ies) during the time interval when undifferentiated meteorite parent bodies were forming, and may have paused at the peak of planetesimal formation when planetary collisions were common.

Spindle architecture constrains karyotype evolution

The eukaryotic cell division machinery must rapidly and reproducibly duplicate and partition the cell’s chromosomes in a carefully coordinated process. However, chromosome numbers vary dramatically between genomes, even on short evolutionary timescales. We sought to understand how the mitotic machinery senses and responds to karyotypic changes by using a series of budding yeast strains in which the native chromosomes have been successively fused. Using a combination of cell biological profiling, genetic engineering and experimental evolution, we show that chromosome fusions are well tolerated up until a critical point. Cells with fewer than five centromeres lack the necessary number of kinetochore-microtubule attachments needed to counter outward forces in the metaphase spindle, triggering the spindle assembly checkpoint and prolonging metaphase. Our findings demonstrate that spindle architecture is a constraining factor for karyotype evolution.

Reliable biogeography requires fossils: insights from a new species-level phylogeny of extinct and living carnivores.

A central objective of historical biogeography is to understand where clades originated and how they moved across space and over time. However, given the dynamic history of ecosystem changes in response to climate change and geological events, the manifold long-distance dispersals over evolutionary timescales, and regional and global extinctions, it remains uncertain how reliable inferences based solely on extant taxa can be achieved. Using a novel species-level phylogeny of all known extant and extinct species of the mammalian order Carnivora and related extinct groups, we show that far more precise and accurate ancestral areas can be estimated by fully integrating extinct species into the analyses, rather than solely relying on extant species or identifying ancestral areas only based on the geography of the oldest fossils. Through a series of simulations, we further show that this conclusion is robust under realistic scenarios in which the unknown extinct taxa represent a biased subset of all extinct species. Our results highlight the importance of integrating fossil taxa into a phylogenetic framework to further improve our understanding of historical biogeography and reveal the dynamic dispersal and diversification history of carnivores.

From stochastic Hamiltonian to quantum simulation: exploring memory effects in exciton dynamics

The unraveling of open quantum system dynamics in terms of stochastic quantum trajectories offers a picture of open system dynamics that consistently considers memory effects stemming from the finite correlation time of environment fluctuations. These fluctuations significantly influence the coherence and energy transport properties of excitonic systems. When their correlation time is comparable to the timescale of the Hamiltonian evolution, it leads to the departure of open system dynamics from the Markovian limit. In this work, we leverage the unraveling of exciton dynamics through stochastic Hamiltonian propagators to design quantum circuits that simulate exciton transport, capturing finite memory effects. In addition to enabling the synthesis of parametrizable quantum circuits, stochastic unitary propagators provide a transparent framework for investigating non-Markovian effects on exciton transport. Our analysis reveals a nuanced relationship between environment correlation time and transport efficiency, identifying a regime of ‘memory-assisted’ quantum transport where time-correlated fluctuations allow the system to reach higher efficiency. However, this property is not universal and can only be realized in conjunction with specific features of the system Hamiltonian.

A suite of selective pressures supports the maintenance of alleles of a Drosophila immune peptide.

The innate immune system provides hosts with a crucial first line of defense against pathogens. While immune genes are often among the fastest evolving genes in the genome, in Drosophila , antimicrobial peptides (AMPs) are notable exceptions. Instead, AMPs may be under balancing selection, such that over evolutionary timescales multiple alleles are maintained in populations. In this study, we focus on the Drosophila antimicrobial peptide Diptericin A, which has a segregating amino acid polymorphism associated with differential survival after infection with the Gram-negative bacteria Providencia rettgeri . Diptericin A also helps control opportunistic gut infections by common Drosophila gut microbes, especially those of Lactobacillus plantarum . In addition to genotypic effects on gut immunity, we also see strong sex-specific effects that are most prominent in flies without functional diptericin A . To further characterize differences in microbiomes between different diptericin genotypes, we used 16S metagenomics to look at the microbiome composition. We used both lab reared and wild caught flies for our sequencing and looked at overall composition as well as the differential abundance of individual bacterial families. Overall, we find flies that are homozygous for one allele of diptericin A are better equipped to survive a systemic infection from P. rettgeri , but in general have a shorter lifespans after being fed common gut commensals. Our results suggest a possible mechanism for the maintenance of genetic variation of diptericin A through the complex interactions of sex, systemic immunity, and the maintenance of the gut microbiome.

Decadal timescale evolution of coral islands: insights from Lakshadweep Archipelago

Low–lying coral islands are susceptible to rising sea levels and climate change, posing risks to island habitability over the next century. The decadal timescale evolution of the islands can provide an understanding of the governing controls of change and island response. This study investigates variations in the shoreline morphology of the Lakshadweep coral islands (Northern Indian Ocean/Arabian Sea) using satellite datasets (2003–2022; CNES/Airbus;0.3m – 0.7m resolution) and sedimentological data. Of the thirty islands (ten inhabited), six islands (Bangaram, Thinnakara, Suheli, Minicoy, Androth and Bitra) have been studied. Most of these islands are less than 1 km2 in size except Androth and Minicoy (>4 km2). While the data is discontinuous for the islands due to cloud obscuring, the shoreline morphology depicts variations for all the islands’ studied, irrespective of habitation and size. Larger islands have undergone consistent erosion since 2007 (total land loss is approximately 3 - 5% cumulatively). Smaller islands have undergone lateral migration, with sediment erosion usually along the southern edge and sediment migration and accumulation northwards, however, overall, their size remains consistently stable. The migration of sediments is observed only from 2007–2017, which coincides with severe El–Nino Southern Oscillation (ENSO) and low amplitude positive Indian Ocean Dipole (IOD) events. Furthermore, sedimentological analysis along Bangaram’s (small island) accreting margin reveals unconsolidated bio-detrital grainstones with predominant sand-sized fractions (2 – 0.25mm). Corals (43%), molluscs (33%), forams (13%), and algae (8%) are the major sediment producers (with 3% unidentified bioclasts). The ongoing climate warming and ocean acidification will influence the carbonate sediment budget in addition to the changing hydrodynamics owing to monsoons, cyclones, and coupled ocean-atmospheric regional phenomenon, altering the sediment production, transport and accumulation on these islands. Furthermore, rising sea levels and consequent erosion by wave action might lead to rapid drowning in the next few centuries. Our study identifies the current status of the island size variability in the Lakshadweep Archipelago and how site-specific and global factors influence them, thus providing insights into assessing the habitability within these low-lying coral islands.

Prevalent fast evolution of genes involved in heterochromatin functions.

Heterochromatin is a gene-poor and repeat-rich genomic compartment universally found in eukaryotes. Despite its low transcriptional activity, heterochromatin plays important roles in maintaining genome stability, organizing chromosomes, and suppressing transposable elements (TEs). Given the importance of these functions, it is expected that the genes involved in heterochromatin regulation would be highly conserved. Yet, a handful of these genes were found to evolve rapidly. To investigate whether these previous findings are anecdotal or general to genes modulating heterochromatin, we compile an exhaustive list of 106 candidate genes involved in heterochromatin functions and investigate their evolution over short and long evolutionary time scales in Drosophila. Our analyses find that these genes exhibit significantly more frequent evolutionary changes, both in the forms of amino acid substitutions and gene copy number change, when compared to genes involved in Polycomb-based repressive chromatin. While positive selection drives amino acid changes within both structured domains with diverse functions and intrinsically disordered regions (IDRs), purifying selection may have maintained the proportions of IDRs of these proteins. Together with the observed negative associations between evolutionary rates of these genes and genomic TE abundance, we propose an evolutionary model where the fast evolution of genes involved in heterochromatin functions is an inevitable outcome of the unique functional roles of heterochromatin, while the rapid evolution of TEs may be an effect rather than cause. Our study provides an important global view of the evolution of genes involved in this critical cellular domain and provides insights into the factors driving the distinctive evolution of heterochromatin.

Building, Maintaining, and (re-)Deploying Genetic Toolkits during Convergent Evolution.

A surprising insight from the advent of genomic sequencing was that many genes are deeply conserved during evolution. With a particular focus on genes that interact with light in animals, I explore the metaphor of genetic toolkits, which can be operationalized as lists of genes involved in a trait of interest. A fascinating observation is that genes of a toolkit are often used again and again during convergent evolution, sometimes across vast phylogenetic distances. Such a pattern in the evolution of toolkits requires three different stages: origin, maintenance, and redeployment of the genes. The functional origins of toolkit genes might often be rooted in interactions with external environments. The origins of light interacting genes in particular may be tied to ancient responses to photo-oxidative stress, inspiring questions about the extent to which the evolution of other toolkits were also impacted by stress. Maintenance of genetic toolkits over long evolutionary timescales requires gene multifunctionality to prevent gene loss when a trait of interest is absent. Finally, the deployment of toolkit genes in convergently evolved traits like eyes sometimes involves the repeated use of similar, ancient genes but other times involves different genes specific to each convergent origin. How often a particular gene family is used time and again for the same function may depend on how many possible biological solutions are available. When few solutions exist and are maintained, evolution is constrained to use the same genes over and over. However, when many different solutions are possible, the innovative possibilities of evolution are often on display. Therefore, a focus on genetic toolkits highlights the combination of legacy-plus-innovation that drives the evolution of biological diversity.

Fully extremal black holes: A black hole graveyard?

While the standard point of view is that the ultimate endpoint of black hole evolution is determined by Hawking evaporation, there is a growing evidence that classical and semi-classical instabilities affect both black holes with inner horizons as well as their ultra-compact counterparts. In this paper we start from this evidence pointing towards extremal black holes as stable endpoints of the gravitational collapse, and develop a general class of spherical and axisymmetric solutions with multiple extremal horizons. Excluding more exotic possibilities, entailing regular cores supporting wormhole throats, we argue that these configurations could be the asymptotic graveyard, the end-point, of dynamical black hole evolution — albeit the timescale of such evolution are still unclear and possibly long and compatible with current astrophysical observations.

Transmission regulating immune genes- a potential strategy to control vector borne disease.

More than 1 million people die every year from vector-borne diseases, which constitute more than 17% of all infectious diseases. This study's primary focus is on the detailed evolutionary history and expression analysis of immune genes, one of the key gene families in the immune system of vectors that play a role in the regulation and interaction of parasites in vector bodies, particularly the mosquitoes that transmit malaria and dengue, significant vector borne disease. The vector potentiality and participation of TLR genes in vector parasite interaction in the Indian context will be explained by the differential expression study of this potential gene family in Indian populations of vector species. This knowledge is supportive undoubtedly for creating new pharmacological targets and inhibitors that can create insect-based transmission stopping techniques for many vector-borne diseases. However, the genetic diversity was found to be comparatively lower in the Toll1A gene than in the NOS immune gene in the malaria vector An. minimus population samples which supports the hypothesis of positive selection in recent evolutionary time scale in malaria vectors. This is one of the novel strategies to identify transmission regulating genetic traits that are controlling the vector-parasite interaction and co-evolution in vector borne disease.

Divergent evolution of NLR genes in the genus Glycine: impacts of annuals and perennials' life history strategies.

Within the family Fabaceae, the genus Glycine is composed of two subgenera annuals (2n=40) and perennials. This life strategy transition may have differentially affected the evolution of various gene families. Its cultivated species G. max has high level of susceptibility to major pathogens including viruses, bacteria and fungi. Understanding nucleotide-binding domain leucine-rich repeat (NLR) genes evolution in soybean is of paramount importance due to their central role in plant immunity and their potential in improving disease resistance in soybean cultivars. In this study, we investigated the significance of this annual-perennial transition on the macroevolution of NLR genes in the genus Glycine. Our results reveal a remarkable distinction between annual species such as Glycine max and Glycine soja, which exhibit an expanded NLRome compared to perennial species (G. cyrtoloba, G. stenophita, G.dolichocarpa, G. falcata, G. syndetika, G. latifolia and G. tomentella). Our evolutionary timescale analysis pinpoints recent accelerated gene duplication events for this expansion, which occurred between 0.1 and 0.5 million years ago, driven predominantly by lineage-specific and terminal duplications. In contrast, perennials initially experienced significant contraction during the diploidisation phase following the Glycine-specific whole-genome duplication event (~10 million years ago). Despite the reduction in the NLRome, perennial lineages exhibit a unique and highly diversified repertoire of NLR genes with limited interspecies synteny. The investigation of gene gain and loss ratios revealed that this diversification resulted from the birth of novel genes following individual speciation events. Among perennials, G. latifolia, a well-known resistance resource, has the highest ratio of these novel genes in the tertiary gene pool. Our study suggests evolutionary mechanisms, including recombination and transposition, as potential drivers for the emergence of these novel genes. This study also provides evidence for the unbalanced expansion of the NLRome in the Dt subgenome compared with the At subgenome in the young allopolyploid G.dolichocarpa. To the best of our knowledge, this is the first study to investigate the effect of annuality and perenniality life transition on the evolution of NLR genes in the genus Glycine to identify its genomics resources for improving the resistance of soybean crop with global importance on the economy and food security.