Evolutionarily Significant Units Research Articles

Genomic insights into isolation of the threatened Florida crested caracara (Caracara plancus).

We conducted a population genomic study of the crested caracara (Caracara plancus) using samples (n = 290) collected from individuals in Florida, Texas, and Arizona, United States. Crested caracaras are non-migratory raptors ranging from the southern tip of South America to the southern United States, including a federally protected relict population in Florida long thought to have been isolated since the last ice age. Our objectives were to evaluate genetic diversity and population structure of Florida's apparently isolated population and to evaluate taxonomic relationships of crested caracaras at the northern edge of their range. Using DNA purified from blood samples, we conducted double-digest restriction site associated DNA sequencing and sequenced the mitochondrial ND2 gene. Analyses of population structure using over 9,000 SNPs suggest that two major clusters are best supported, one cluster including only Florida individuals and the other cluster including Arizona and Texas individuals. Both SNPs and mitochondrial haplotypes reveal the Florida population to be highly differentiated genetically from Arizona and Texas populations, whereas, Arizona and Texas populations are moderately differentiated from each other. The Florida population's mitochondrial haplotypes form a separate monophyletic group, while Arizona and Texas populations share mitochondrial haplotypes. Results of this study provide substantial genetic evidence that Florida's crested caracaras have experienced long-term isolation from caracaras in Arizona and Texas and thus, represent a distinct evolutionary lineage possibly warranting distinction as an Evolutionarily Significant Unit (ESU) or subspecies. This study will inform conservation strategies focused on long-term survival of Florida's distinct, panmictic population.

Demographic history and conservation aspects of two relict shrubs (Daphnimorpha spp., Thymelaeaceae) showing disjunct and restricted distribution in the southern part of Japan

Climate relicts are of particular importance in evolutionary biology because of the strategies they may adopt for long-term survival despite climatic oscillations. However, because their current distribution is usually restricted and fragmented, many climatic relicts are at risk of extinction. Daphnimorpha (Thymelaeaceae) is a genus endemic to Japan that comprises two species (D. capitellata and D. kudoi) with a disjunct distribution in southern Japan. These two shrub species are endemic to a single mountain range. In this study, we conducted population genetic analyses using genome-wide single nucleotide polymorphisms obtained from multiplexed inter-simple sequence repeats genotyping by sequencing to reveal the phylogeographic history and obtain conservation implications for the two species. The results showed that these two species may have been isolated since the Tertiary period, supporting their status as climate relicts. In addition, D. kudoi showed clear genetic differentiation between the two mountains where it occurred (Mt. Nagata and Mt. Kuromi), with a decline in the effective population sizes inferred during the last glacial period. In contrast, D. capitellata showed no clear intraspecific genetic structure, and its effective population size was relatively stable. These differences could result in contrasting light tolerance between species. For conservation, we recommend managing these species as three evolutionarily significant units (ESUs): D. capitellata, D. kudoi population on Mt. Nagata, and D. kudoi population on Mt. Kuromi. Considering the limited gene flow among subpopulations and small population census, all ESUs require conservation attention to maintain or increase their effective population sizes.

Unveiling the Potential Distribution of the Highly Threatened Madeira Pipistrelle (Pipistrellus maderensis): Do Different Evolutionary Significant Units Exist?

The isolation of islands has played a significant role in shaping the unique evolutionary histories of many species of flora and fauna, including bats. One notable example is the Madeira pipistrelle (Pipistrellus maderensis), which inhabits the Macaronesian archipelagos of the Azores, Madeira, and the Canary Islands. Despite the high biogeographic and conservation importance of this species, there is limited information on its ecology and evolutionary history across different archipelagos. In our study, we employed species distribution models (SDMs) to identify suitable habitats for the Madeira pipistrelle and determine the environmental factors influencing its distribution. Additionally, we conducted molecular comparisons using mitochondrial DNA data from various Macaronesian islands. Molecular analyses provided compelling evidence for the presence of distinct Evolutionary Significant Units on the different archipelagos. We identified distinct haplotypes in the populations of Madeira and the Canary Islands, with a genetic distance ranging from a minimum of 2.4% to a maximum of 3.3% between samples from different archipelagos. In support of this, SDMs highlighted relevant dissimilarities between the environmental requirements of the populations of the three archipelagos, particularly the climatic niche. Our research demonstrates that deeper investigations that combine ecological, morphological, and genetic areas are necessary to implement tailored conservation strategies.

Strong Population Genetic Structure for the Endangered Micro-Trapdoor Spider Moggridgea rainbowi (Mygalomorphae, Migidae) in Unburnt Habitat after Catastrophic Bushfires

Catastrophic wildfires impacted large areas of western Kangaroo Island (KI), South Australia in 2019–2020, burning habitat for many species, including large proportions of the distributional range of the KI micro-trapdoor spider Moggridgea rainbowi, which led to it being listed as Endangered under Australia’s Environment Protection and Biodiversity Conservation Act (EPBC Act). In order to assess population genetic structure in M. rainbowi and detect diagnosable lineages and their distributional patterns across KI, 28 individuals were genotyped for 2495 loci, sampling from all known populations of the species. Population genetic and phylogenetic analyses of nuclear and mitochondrial sequence data provided strong support for three Evolutionarily Significant Units (ESUs) within M. rainbowi; two populations on eastern KI and a heavily fire-impacted western population. High levels of divergence and fixed allelic differences between 5 and 16% indicate a lack of gene flow between ESUs and long periods of isolation. Distributional patterns of these lineages match likely locations of isolation events caused by successive changes to sea level during the Quaternary (2.58 million years ago to present), which led to KI being intermittently connected to the mainland or separated into one or more islands. Our findings have strong conservation implications for M. rainbowi and highlight the importance of inclusion of population genetic structure to inform conservation strategies and to conserve lineage biodiversity at the species level and below.

A Synthesis of the Ecology and Conservation of Pseudoplatystoma Catfishes in the Neotropics

Species of the genus Pseudoplatystoma, the long-whiskered catfishes, are important in commercial and recreational fisheries in South America, and some species have become key to regional aquaculture. Some species of the genus are under pressure due to overfishing and the negative impacts of dams. Six questions are asked in this review: (i) What species are in the genus, and where are they distributed? (ii) What are the life histories and ecologies of Pseudoplatystoma species? (iii) What are the patterns of somatic growth for these species? (iv) What is known about the biomass, production, and population dynamics of Pseudoplatystoma? (v) What is the geographic distribution of genetic variation within Pseudoplatystoma species? (vi) What are the threats to the conservation of these species? The taxonomy of the genus currently includes eight species, respectively, distributed over the Orinoco, Amazon, Paraná, and São Francisco basins. Pseudoplatystoma catfishes typically exhibit longitudinal migrations for reproduction and lateral migration for feeding, but these patterns may vary among populations. The size of the first maturation of these catfishes varies between 57 cm to 82 cm in total length. Five of the eight species spawn during the rising water season. Pseudoplatystoma species can grow to about 130 cm in total length and 100 Kg in weight and live until 30 years of age, depending upon the species. Biomass production and population dynamics of these catfishes have not yet been fully described. Their life-history characteristics indicate that they are periodic strategists with associated population recruitment dynamics. Population genetic patterning varies among Pseudoplatystoma species, with some degree of homing behavior and genetic differentiation among populations, indicating the need for management by applying the Management Unit and perhaps Evolutionary Significant Unit concepts. The main threats to the persistence of these catfishes are overfishing and alterations in and obstruction of river flow due to the construction of hydropower dams. After synthesizing existing information on species of the genus Pseudoplatystoma, we offer suggestions for future research to fill critical gaps in the knowledge of this group.

Genetic evidence of population subdivision among Masai giraffes separated by the Gregory Rift Valley in Tanzania.

The Masai giraffe has experienced a population decline from 70,000 to 35,000 in the past three decades and was declared an endangered subspecies by the IUCN in 2019. The remaining number of Masai giraffe are geographically separated by the steep cliffs of the Gregory Rift escarpments (GRE) in Tanzania and Kenya dividing them into two populations, one west and one east of the GRE. The cliffs of the GRE are formidable barriers to east-west dispersal and gene flow and the few remaining natural corridors through the GRE are occupied by human settlements. To assess the impact of the GRE on Masai giraffe gene flow, we examined whole genome sequences of nuclear and mitochondrial DNA (mtDNA) variation in populations located east (Tarangire ecosystem) and west (Serengeti ecosystem) of the GRE in northern Tanzania. Evidence from mtDNA variation, which measures female-mediated gene flow, suggests that females have not migrated across the GRE between populations in the Serengeti and Tarangire ecosystems in the past ~289,000 years. The analysis of nuclear DNA variation compared to mtDNA DNA variation suggests that male-mediated gene flow across the GRE has occurred more recently but stopped a few thousand years ago. Our findings show that Masai giraffes are split into two populations and fulfill the criteria for designation as distinct evolutionary significant units (ESUs), which we denote as western Masai giraffe and eastern Masai giraffe. While establishing giraffe dispersal corridors across the GRE is impractical, conservation efforts should be focused on maintaining connectivity among populations within each of these two populations. The importance of these efforts is heightened by our finding that the inbreeding coefficients are high in some of these Masai giraffe populations, which could result in inbreeding depression in the small and fragmented populations.

Defining Evolutionary Conservation Units in the Macedonian Crested Newt, Triturus macedonicus (Amphibia; Salamandridae), in a Biodiversity Hotspot

In this study, we used genetic approaches to assess the conservation status of a protected amphibian species, the Macedonian crested newt, Triturus macedonicus, in Northern Pindos National Park (Epirus, Greece). Mitochondrial DNA sequences and multilocus genotypes of individuals from 38 breeding sites were used to infer their phylogenetic position and to detect and measure genetic variation patterns, population genetic structure, and levels of gene flow. The examined individuals fell within two major clades of the Macedonian crested newt phylogeny, being geographically separated by the Aoos River valley and Vikos Gorge. Both groups constitute separate gene pools, bearing private haplotypes and alleles, and the groups were found to be highly differentiated in both their mitochondrial and microsatellite markers. Thus, they meet all of the criteria needed to be characterized as evolutionary significant units (ESUs) that deserve a separate conservation status. Within each ESU, the particularly high inter-population differentiation and low migration rates imply a lack of connectivity between breeding sites and local isolation in favorable habitats. Our results can inform future programs and actions towards the conservation and management of the Macedonian crested newt in the area.

Genetic and Ecological Divergence of Cinnamon Hummingbird Amazilia rutila (Aves: Trochilidae) Continental Populations Separated by Geographical and Environmental Barriers

Background and Research Aims: Historical geological events and climatic changes have played important roles in shaping population differentiation and distribution within species. Amazilia rutila (Trochilidae) is a widespread hummingbird species in the tropical dry forest along the Pacific slope and the Yucatán Peninsula in Mexico. Methods: We used mitochondrial DNA sequence, ecological niche modelling and niche divergence tests to determine the effects of major geographic barriers and environmental variability on genetic and niche divergence of A. rutila continental populations. Results: Our results revealed three genetic groups without haplotype sharing corresponding to the distribution of individuals/populations from the Pacific slope W of the Isthmus of Tehuantepec (PAC), in Oaxaca and Chiapas E of the Isthmus of Tehuantepec (CHIS_OAX) and those from the Yucatán Peninsula and Guatemala (YUC). Values of neutrality tests suggest past demographic expansion without effective population size changes over time, and the time since the demographic expansion ranged between 39.4 and 84.45 ka BP. Each genetic group differed in their position in environmental space, with low-to-very limited overlap in the fundamental climatic niche dimensions of all groups analyzed, particularly between YUC and PAC. Analysis of climate differentiation and ecological niche comparisons showed that the environmental space occupied by these mtDNA groups is similar but not identical. Conclusion: We conclude that the genetic differentiation of A. rutila is consistent with a model of population isolation by geographical barriers and environmental differences. Inferences about the consequences of past demographic expansion and isolation underlying intraspecific evolutionary relationships await further study. Implications for Conservation: Our findings highlight the importance of preserving evolutionary significant units of this widespread hummingbird species. Conservation actions must consider intrinsic requirements of evolutionarily distinct populations and the environmental drivers that shape their distributions, maximizing preservation of intraspecific genetic variability and monitoring changes in genetic diversity.

Phylogeographic analysis revealed allopatric distribution pattern and biogeographic processes of the widespread pale chub Opsariichthys acutipinnis-evolans complex (Teleostei: Cyprinidae) in southeastern China

Understanding phylogeographic patterns of widespread species can provide insights into their speciation processes and guide the conservation and management measures. In the present study, Cyt b sequences were used to investigate the phylogeographic structure of the Opsariichthys acutipinnis-evolans complex in southeastern China. The gene tree revealed six major lineages (lineage A-F) which were distributed allopatrically, with lineage B distributed in the western part (middle Yangtze and Pearl River) and the other lineages in the eastern part (lower Yangtze and coastal waters of southeastern China). Dating of the lineage diversification revealed the early eastward-westward divergence separating lineage A, B, and C during the late Pliocene and early Pleistocene (3.00, 2.61, and 2.12 Ma, respectively), possibly due to the uplift of the Qinghai-Tibetan Plateau and subsequent orogenies in southeastern China. The following northward-southward diversification resulted in the separation of lineage D, E, and F in the early-middle Pleistocene (1.33 and 0.95 Ma), likely associated with the enhanced succession of glacial cycles during the Early-Middle Pleistocene transition. Although the genetic divergence of 0.017–0.070 among lineages indicated possible different species, morphological characters failed to separate them. Therefore, they were treated as a species complex. Given the distinct genetic divergence of the various lineages, they were suggested as different evolutionary significant units.

Conservation prioritisation through genomic reconstruction of demographic histories applied to two endangered suids in the Malay Archipelago

AbstractAimThe biodiversity of the Malay Archipelago is the product of the region's rich biogeographical history with periods of island connectivity and isolation during the Pleistocene glacial cycles. Here, the case of two endemic suid species, the Javan (Sus verrucosus) and Bawean (S. blouchi) warty pigs, was used to illustrate how biogeographic processes and recent anthropogenic pressures can shape demographic histories with significant implications for species conservation.LocationMalay Archipelago, with focus on Bawean and Java.MethodsWe employed genome‐wide single nucleotide polymorphisms from the Porcine SNP60 v2 BeadChip to assess interspecific genetic differentiation, to estimate divergence times and to perform demographic model selection.ResultsIn contrast to the hypothesis of recent divergence during the last glacial maximum, S. blouchi was found to have diverged from S. verrucosus at least 166 k years ago following a founder event. The contemporary S. blouchi population was characterised by a recent bottleneck that reduced the effective population size to less than 20. The genomic assessment supports the single species status of S. blouchi, as was previously proposed based on morphometrics. The demographic history of S. verrucosus showed evidence of secondary contact with the sympatric banded pig (S. scrofa vittatus) that colonised Java 70 k years ago.Main ConclusionsWhile the Javan and Bawean warty pigs have persisted throughout the Pleistocene climatic oscillations, contemporary pressures from human activities threaten their survival and immediate action should be taken to grant legal protection to both S. verrucosus and S. blouchi. This study highlighted the use of demographic history modelling using genomic data to identify evolutionary significant units and inform conservation.

A preliminary note on population structure in eastern South Pacific common bottlenose dolphins, Tursiops truncatus

Previous studies of eastern South Pacific common bottlenose dolphins, Tursiops truncatus, defined offshore and inshore ecotypes in Peru based on cranial and tooth morphology, documented the presence of a single resident inshore community (‘pod-R’) in central-north Chile, and confirmed the presence of offshore bottlenose dolphins off Chile. Here, mtDNA control region (331bp) was examined to evaluate genetic relationships between four geographic areas: inshore pod-R (n=8), Chilean offshore population (n=8), Peruvian inshore (n=3) and offshore (n=12) ecotypes. This is the first genetic analysis of T. truncatus in this ocean basin. Phylogenetic analysis grouped the three Peruvian specimens morphologically identified as inshore ecotype in an independent cluster, supported by 100% bootstrap value. The net genetic distance between Peruvian inshore and Peruvian offshore ecotypes was estimated at 2.9%, and even higher when compared with Chilean bottlenose dolphins. Morphological and mtDNA evidence combined argues for considering inshore and offshore ecotypes as evolutionary significant units, to be managed accordingly. Despite its inshore behavioural ecology, pod-R presented a high divergence from the Peruvian inshore ecotype and a relatively closer affinity with the Chilean offshore stock (3.41% and 0.87% net interpopulational distance, respectively). However, homogeneity tests showed significant genetic differences of pod-R with all other groups, including Chilean offshore. This, combined with a low nucleotide diversity (0.0069) and behavioural observations, suggest that pod-R may be reproductively isolated and active protection measures are recommended. Only one haplotype from a total of 21 was shared by Peruvian and Chilean offshore animals. Their net genetic distance was estimated at 0.024 and no significant differences were found in haplotype frequencies, suggesting a single, wide-ranging ‘Peru-Chile offshore stock’.

GENETIC DIVERSITY AND STRUCTURE OF THE WHITE-FRONTED PARROT (AMAZONA ALBIFRONS) IN MEXICO

In this study we assessed the genetic diversity and differentiation, and genealogical relationships in a group of individuals of A. albifrons distributed on the Pacific slope and in the Yucatan Peninsula, Mexico using mitochondrial DNA markers.Both range regions the species showed a high genetic diversity, suggesting population expansion from a small effective population size. Genealogical relationships revealed the presence of two genetic groups that have gone through different demographic events, one in the Yucatan Peninsula and the other in the Pacific slope. Considering that the individuals of the Yucatan Peninsula formed a genetic group exclusive to the region due to isolation events and a unique evolutionary history, we suggest its recognition as an evolutionarily significant unit (ESU). In addition, considering the presence of unique haplotypes in the localities of Sinaloa and Michoacan, we recommended that conservation plans focus on these regions.

Molecular phylogenetic assessment of three major taxa in the Asplenium scolopendrium complex (Aspleniaceae)

AbstractTaxonomic ambiguities of the Asplenium scolopendrium complex arise from multiple synonyms and reclassifications, subtle phenotypic variations, and a lack of information on phylogenetic relationships. This study thus aimed to resolve this taxonomic uncertainty and provide insight into identifying evolutionarily significant units (ESUs). We first utilized genomic approaches to resolve the phylogenetic position of the East Asian taxon, A. komarovii, which is currently treated as a separate species. Phylogenetic trees based on whole plastomes suggested that A. komarovii is a variant of A. scolopendrium most closely related to A. scolopendrium var. americanum, with A. scolopendrium var. scolopendrium as the sister to these in the clade. This three‐lineage relationship was also validated with the nuclear marker gapCp and newly developed infraspecific plastid markers. Asplenium komarovii should therefore be subsumed into A. scolopendrium, rather than remaining a distinct species. In addition, our phylogenetic analyses further revealed that A. scolopendrium var. americanum consisted of subclades with potential to be treated as distinct ESUs. Our results also grouped a newly discovered population from New Mexico (U.S.A.) as a member of A. scolopendrium var. americanum and identified a genetically admixed population in New York (U.S.A.) containing putative hybrids. Well‐defined taxonomy and ESUs can greatly improve the implementation of tailored conservation actions by adequately reflecting the underlying evolutionary potentials of the A. scolopendrium complex.

Mismatch between conservation needs and actual representation of lions from West and Central Africa in in situ and ex situ conservation

AbstractMismatches between conservation action and conservation needs have been highlighted for diverse species. Lion (Panthera leo) conservation is no exception, raising the question of whether current conservation strategies are always adequate to ensure the long‐term persistence of threatened taxa.To investigate the representation of different lion Evolutionary Significant Units in field research, captive populations, funding allocation, and education, we carried out a literature review and sent an online questionnaire to zoos worldwide. Over 75% of the publications focused on southern and eastern African populations. Uplisting the West African lion to Critically Endangered did not change this result. We received 88 responses from zoos, which reported 346 lions in 83 zoos. Only 14 individuals have West and Central African origins. Over 70% of the respondents reported that they do not include any information on the conservation status or taxonomy of lions from West and Central Africa in their education programs. The minority of zoos funding in situ lion projects did so in Eastern and Southern Africa. We provide recommendations to encourage role‐players involved in lion and other threatened species conservation to address this mismatch by shifting some of their attention and funding to West and Central Africa.

A complete COI library of Samoan butterflies reveals layers of endemic diversity on oceanic islands

AbstractWe investigated the entire butterfly fauna of the Samoan Archipelago (Pacific Ocean) by combining COI barcode sequences for specimens from these islands with those available in repositories at larger biogeographic scale. Haplotype networks and a generalized mixed Yule‐coalescent (GMYC) model were applied to identify evolutionary significant units (ESUs). The ESUs from Samoan islands were compared with ESUs of the same or sister taxa regionally and worldwide to explore the level of endemicity and of congruence between established taxonomy and COI barcodes. The level of ESUs endemicity was similar to that shown by species and subspecies. Australia was the most frequent origin for Samoan lineages, followed by Orient‐Asia. When comparing the agreement and mismatch between established taxonomy and ESUs between the Australia‐Oceania region and Europe and North America, the COI molecular marker revealed a similar performance in taxonomic identification. Despite this overall convergent pattern, the degree of mtDNA divergence and the analysis of functional traits suggested that the mechanisms producing patterns of genetic differentiation in temperate butterflies over ancient continental lands differ to those occurring across a vast ocean into geologically young islands. Mechanisms on Samoan islands include relatively recent and exceptional oceanic dispersal, possibly followed by repeated extinction events. In the Australia‐Oceania region we found a similar fraction of species showing introgression with the maintenance of phenotypic differences as it occurs on the mainland, but the phenomenon was limited to sectors of each species distribution area. Regular gene flow among the Samoan islands seems to prevent allopatric speciation within the archipelago.

A new species of jupati, genusMetachirusBurmeister 1854 (Didelphimorphia, Didelphidae) for the Brazilian Amazon

AbstractThe brown or pouchless four-eyed opossums or jupatis represent the genusMetachiruswith a wide geographical range in the Neotropics. Recent studies show distinct monophyletic clades with high genetic divergence and recognized two species,Metachirus nudicaudatusandMetachirus myosuros. Nevertheless, there is a need for systematic revision with multiple sources of evidence on the taxonomy ofMetachirus, which has never been fully revised. Here we describe a new species ofMetachirusfor the Brazilian Amazon from the Xingu/Tocantins interfluve using the unification of concepts and evolutionary significant units, morphological, genetic, and geographic data. Our analysis reveals a new species withinMetachirusas a differentiated Amazonian clade from the Serra dos Carajás region and the Caxiuanã National Forest, both in the Xingu endemism centre. This new species can be distinguished from the type species,M. nudicaudatusand fromM. myosurosthrough discrete external morphological characters, including cranium and dentition, and molecular data with an average degree of divergence, but ancient divergence time for the mitochondrial cytochromebgene. The Amazon River delimits the distribution of the new species, which also occurs in areas under strong anthropogenic pressure, reinforcing the importance to guide conservation strategies for the region.

Genomic divergence of hatchery- and natural-origin Chinook salmon (Oncorhynchus tshawytscha) in two supplemented populations

Captive propagation is widely used for the conservation of imperiled populations. There have been concerns about the genetic effects of such propagation, but few studies have measured this directly at a genomic level. Here, we use moderate-coverage (10X) genome sequences from 80 individuals to evaluate the genomic distribution of variation of several paired groups of Chinook salmon (Oncorhynchus tshawytscha). These include (1) captive- and natural-origin fish separated by at least one generation, (2) fish within the same generation having high fitness in captivity compared to those with high fitness in the wild, and (3) fish listed as different Evolutionarily Significant Units (ESUs) under the US Endangered Species Act. The distribution of variation between high-fitness captive and high-fitness natural fish was nearly identical to that expected from random sampling, indicating that differential selection in the two environments did not create large allele frequency differences within a single generation. In contrast, the samples from distinct ESUs were clearly more divergent than expected by chance, including a peak of divergence near the GREB1L gene on chromosome 28, a gene previously associated with variation in time of return to fresh water. Comparison of hatchery- and natural-origin fish within a population fell between these extremes, but the maximum value of FST was similar to the maximum between ESUs, including a peak of divergence on chromosome 8 near the slc7a2 and pdgfrl genes. These results suggest that efforts at limiting genetic divergence between captive and natural fish in these populations have successfully kept the average divergence low across the genome, but at a small portion of their genomes, hatchery and natural salmon were as distinct as individuals from different ESUs.

Phylogeography and karyotypic evolution of some Deuterodon species from southeastern Brazil (Characiformes, Characidae, Stethaprioninae).

Deuterodon is a genus of the subfamily Stethaprioninae, a group of Neotropical fish known as tetras. Deuterodon hastatus represents a species complex, which is supported by cytogenetic and molecular data. In this study, we show the results of comparative evolutionary analyses of the ATP synthase subunit 6 gene in four Deuterodon species, in addition to ribosomal markers (18S rDNA and 5S rDNA), of a new population of the D. hastatus species complex from the Angra dos Reis/RJ region. The study population comprised a new cytotype, which we refer to as cytotype D, in D. hastatus, with 2n = 50 = 6M+8SM+8ST+28A. We obtained three different clades of D. hastatus in our phylogeny, one of them composed only by specimens of cytotype D. By using molecular clock dating, we observed that the radiation of Deuterodon from southeastern Brazil seemed to be associated with neotectonic events that occurred during the Miocene-Pliocene and Pliocene-Pleistocene transitions, marked by the capture of headwater streams and marine transgressions. The results obtained reinforce the idea that D. hastatus is a species complex, and at least three evolutionary significant units were identified in this group.

Assessing Species Boundaries in the Freshwater Snail Family Physidae Using Coalescent-Based Delimitation Methods

A common issue for several freshwater snail families is the fact that, for some genera, the criteria for species delimitation are scarce, subjected to intraspecific and ontogenetic variation, or insufficiently discrete to allow a clear distinction between species. For these genera, the use of molecular approaches is decisive in recognizing valid species. Herein, we applied coalescent methods to delimit evolutionary significant units (ESUs) in Physidae. We used 496 sequences of the mitochondrial cytochrome oxidase subunit I (COI) gene available in GenBank, ascribed to six genera and 25 nominal species, and the algorithms GMYC (General Mixed Yule-Coalescent) with two criteria (single-threshold and multiple-threshold), PTP (Poisson Tree Process), and mPTP (multi-rate Tree Poisson Process). The method that presented the best performance was the mPTP. This method showed a higher frequency of taxonomic species recovery and has delimited a lower number of ESUs (25 ESUs from a dataset attributed to 25 nominal species). Physidae is a family of freshwater snails that presents several issues related to the recognition of species boundaries. Herein, the use of coalescent delimitation methods allowed us to address important taxonomic questions, opening new avenues for future taxonomic research. Our findings have shown that the morphological operational criteria used to delimit several valid species fall within the limits of intraspecific variability, demonstrating taxonomic inflation within this family. Our results also demonstrated the presence of cryptic diversity under the nominal species Physella acuta (Draparnaud, 1805), Beringophysa jennessi (Dall, 1919), Physella pomilia (Conrad, 1834), and Physella gyrina (Say, 1821).

Integrated taxonomy reveals new threatened freshwater mussels (Bivalvia: Hyriidae: Westralunio) from southwestern Australia

The freshwater mussel Westralunio carteri (Iredale, 1934) has long been considered the sole Westralunio species in Australia, limited to the Southwest and listed as vulnerable on the IUCN Red List and under Australian legislation. Here, we used species delimitation models based on COI mtDNA sequences to confirm existence of three evolutionarily significant units (ESUs) within this taxon and conducted morphometric analyses to investigate whether shell shape differed significantly among these ESUs. “W. carteri” I was found to be significantly larger and more elongated than “W. carteri” II and “W. carteri” II + III combined, but not different from “W. carteri” III alone. We recognise and redescribe “W. carteri” I as Westralunio carteri (Iredale, 1934) from western coastal drainages and describe “W. carteri” II and “W. carteri” III as Westralunio inbisi sp. nov. from southern and lower southwestern drainages. Two subspecies are further delineated: “W. carteri” II is formally described as Westralunio inbisi inbisi subsp. nov. from southern coastal drainages, and “W. carteri” III as Westralunio inbisi meridiemus subsp. nov. from the southwestern corner. Because this study profoundly compresses the range of Westralunio carteri northward and introduces additional southern and southwestern taxa with restricted distributions, new threatened species nominations are necessary.