Evolutionary Ecology Research Articles

Demographic turnover can be a leading driver of hierarchy dynamics, and social inheritance modifies its effects.

Individuals and societies are linked through a feedback loop of mutual influence. Demographic turnover shapes group composition and structure by adding and removing individuals, and social inheritance shapes social structure through the transmission of social traits from parents to offspring. Here I examine how these drivers of social structure feedback to influence individual outcomes. I explore these society-to-individual effects in systems with social inheritance of hierarchy position, as occur in many primates and spotted hyenas. Applying Markov chain models to empirical and simulated data reveals how demography and social inheritance interact to strongly shape individual hierarchy positions. In hyena societies, demographic processes-not status seeking-account for the majority of hierarchy dynamics and cause an on-average lifetime decline in social hierarchy position. Simulated societies clarify how social inheritance alters demographic effects-demographic processes cause hierarchy position to regress to the mean, but the addition of social inheritance modifies this pattern. Notably, the combination of social inheritance and rank-related reproductive success causes individuals to decline in rank over their lifespans, as seen in the hyena data. Further analyses explore how 'queens' escape this pattern of decline, and how variation in social inheritance generates variability in reproductive inequality. This article is part of the theme issue 'Evolutionary ecology of inequality'.

Inheritance and inequality among nomads of South Siberia.

At the headwaters of the Yenisei River in Tuva and northern Mongolia, nomadic pastoralists move between camps in a seasonal rotation that facilitates their animals' access to high-quality grasses and shelter. The use and informal ownership of these camps depending on season helps illustrate evolutionary and ecological principles underlying variation in property relations. Given relatively stable patterns of precipitation and returns to capital improvement, families generally benefit from reusing the same camps year after year. We show that locations with higher economic defensibility and capital investment-winter camps and camps located in mountain/river valleys-are claimed and inherited more frequently than summer camps and camps located in open steppe. Camps are inherited patrilineally and matrilineally at a ratio of 2 : 1. Despite its practical importance, camp inheritance is not associated with livestock wealth today, which is better predicted by education and wealth outside the pastoral economy. The relationship between the livestock wealth of parents and their adult children is significantly positive, but relatively low compared to other pastoralists. The degree of inequality in livestock wealth, however, is very close to that of other pastoralists. This is understandable considering the durability and defensibility of animal wealth and economies of scale common across pastoralists. This article is part of the theme issue 'Evolutionary ecology of inequality'.

Identifying key socioecological factors influencing the expression of egalitarianism and inequality among foragers.

Understanding how resource characteristics influence variability in social and material inequality among foraging populations is a prominent area of research. However, obtaining cross-comparative data from which to evaluate theoretically informed resource characteristic factors has proved difficult, particularly for investigating interactions of characteristics. Therefore, we develop an agent-based model to evaluate how five key characteristics of primary resources (predictability, heterogeneity, abundance, economy of scale and monopolizability) structure pay-offs and explore how they interact to favour both egalitarianism and inequality. Using iterated simulations from 243 unique combinations of resource characteristics analysed with an ensemble machine-learning approach, we find the predictability and heterogeneity of key resources have the greatest influence on selection for egalitarian and nonegalitarian outcomes. These results help explain the prevalence of egalitarianism among foraging populations, as many groups probably relied on resources that were both relatively less predictable and more homogeneously distributed. The results also help explain rare forager inequality, as comparison with ethnographic and archaeological examples suggests the instances of inequality track strongly with reliance on resources that were predictable and heterogeneously distributed. Future work quantifying comparable measures of these two variables, in particular, may be able to identify additional instances of forager inequality. This article is part of the theme issue 'Evolutionary ecology of inequality'.

The economics of early inequality.

We examine three recent frameworks that attempt to explain early inequality. One explanation involves the emergence of dense and predictable resource patches in the Holocene, together with differential asset accumulation and inheritance by individuals or households. In this view, agriculture and pastoralism led to greater inequality because farmland and animal herds were readily inherited. Another explanation involves the distinction between ideal free and ideal despotic population distributions, together with factors that could trigger a transition from the former to the latter. We offer a third framework based on economic concepts. In our view, inequality initially arose across locations (insider-outsider inequality) and reflected geographical differences in resource endowments at those locations. As population densities increased, the barriers to individual migration across locations included fewer kinship linkages and the use of force by insiders to exclude outsiders. These barriers became important with the transition from mobile to sedentary foraging and predate agriculture. Insider-outsider inequality was followed by stratification within settlements (elite-commoner inequality), which arose at still higher population densities. We see these three theoretical approaches as distinct but complementary. While they overlap, each emphasizes some phenomena and processes ignored by the other two. This article is part of the theme issue 'Evolutionary ecology of inequality'.

Playing the political game: the coevolution of institutions with group size and political inequality.

All societies need to form institutional rules to regulate their social interactions. These specify what actions individuals should take in particular situations, and what sanctions will apply if individuals violate these rules. However, forming these institutional rules involves playing a political game-a process of negotiation between individuals that is costly and time-consuming. Intuitively, this cost should be expected to increase as a group becomes larger, which could then select for a transition to hierarchy to keep the cost of playing the political game down as group size increases. However, previous work has lacked a mechanistic yet general model of political games that could formalize this argument and test the conditions under which it holds. We address this by formalizing the political game using a standard consensus formation model. We show that the increasing cost of forming a consensus over institutional rules selects for a transition from egalitarian to hierarchical organization over a wide range of conditions. Playing a political game to form institutional rules in this way captures and unites a previously disparate set of voluntary theories for hierarchy formation, and can explain why the increasing group size in the Neolithic would lead to strong political inequality. This article is part of the theme issue 'Evolutionary ecology of inequality'.

Why did foraging, horticulture and pastoralism persist after the Neolithic transition? The oasis theory of agricultural intensification.

Despite the global spread of intensive agriculture, many populations retained foraging or mixed subsistence strategies until well into the twentieth century. Understanding why has been a longstanding puzzle. One explanation, called the marginal habitat hypothesis, is that foraging persisted because foragers tended to live in marginal habitats generally not suited to agriculture. However, recent empirical studies have not supported this view. The alternative but untested oasis hypothesis of agricultural intensification claims that intensive agriculture developed in areas with low biodiversity and a reliable water source not reliant on local rainfall. We test both the marginal habitat and oasis hypotheses using a cross-cultural sample drawn from the 'Ethnographic atlas' (Murdock 1967 Ethnology 6, 109-236). Our analyses provide support for both hypotheses. We found that intensive agriculture was unlikely in areas with high rainfall. Further, high biodiversity, including pathogens associated with high rainfall, appears to have limited the development of intensive agriculture. Our analyses of African societies show that tsetse flies, elephants and malaria are negatively associated with intensive agriculture, but only the effect of tsetse flies reached significance. Our results suggest that in certain ecologies intensive agriculture may be difficult or impossible to develop but that generally lower rainfall and biodiversity is favourable for its emergence. This article is part of the theme issue 'Evolutionary ecology of inequality'.

The best of both worlds: no apparent trade-off between immunity and reproduction in two group-living African mole-rat species.

Co-operatively breeding mammals often exhibit a female reproductive skew and suppression of the subordinate non-breeding group members. According to evolutionary theory and the immunity-fertility axis, an inverse relationship between reproductive investment and survival (through immunocompetence) is expected. As such, this study investigated if a trade-off between immunocompetence and reproduction arises in two co-operatively breeding African mole-rat species, namely the Damaraland mole-rat (Fukomys damarensis) and common mole-rat (Cryptomys hottentotus hottentotus), which possess female reproductive division of labour. This study also attempted to investigate the relationship between the immune and endocrine systems in Damaraland mole-rats. There was no trade-off between reproduction and immunocompetence in co-operatively breeding African mole-rat species, and in the case of the Damaraland mole-rats, breeding females (BFs) possessed increased immunocompetence compared with non-breeding females (NBFs). Furthermore, the increased levels of progesterone possessed by Damaraland mole-rat BFs compared with NBFs appear to be correlated to increased immunocompetence. In comparison, BF and NBF common mole-rats possess similar immunocompetence. The species-specific differences in the immunity-fertility axis may be due to variations in the strengths of reproductive suppression in each species. This article is part of the theme issue 'Evolutionary ecology of inequality'.

Evolution of Industrial Ecology and Analysis of Influencing Factors: The Yellow River Basin in China

The Yellow River Basin is an important ecological function area and economic zone in China that faces the dual pressure of economic development and ecological protection. Industrial ecology designs industrial activities by imitating the ecosystem and would solve the dilemma in the development process of the Yellow River Basin. In this study, we evaluated the industrial ecology of 100 prefecture-level cities along the Yellow River Basin from 2003 to 2020 using the entropy weight method and analyzed their long-term spatial and temporal evolution trends. We also deconstructed the driving factors affecting the industrial ecology in the Yellow River Basin, regarding both internal and external aspects, using the coupled coordination model and the panel quantile model. We found the following: (1) The industrial ecology in the Yellow River Basin was slowly increasing in a “N”-type transformation trajectory, but the overall was still relatively low. (2) The slow improvement in ecosystem efficiency and the low coordination between the industrial system and the ecosystem are the main internal factors limiting the improvement in industrial ecology. (3) The population agglomeration, human capital accumulation, government guidance, and technology level are all important for improvements in industrial ecology in the Yellow River Basin. The impact of the financial level on industrial ecology in the Yellow River Basin was found to be negative. Therefore, it is necessary to take the correlation and coordination between the industrial system and the ecosystem as the main means and actively and positively promote the role of the external influencing factors to improve the industrial ecology in the Yellow River Basin.

A multifaceted framework to establish the presence of meaning in non-human communication.

Does non-human communication, like language, involve meaning? This question guides our focus through an interdisciplinary review of the theories and terminology used to study meaning across disciplines and species. Until now, it has been difficult to apply the concept of meaning to communication in non-humans. This is partly because of the varied approaches to the study of meaning. Additionally, while there is a scholarly acknowledgement of potential meaning in non-human cognition, there is also scepticism when the topic of communication arises. We organise some of the key literature into a coherent framework that can bridge disciplines and species, to ensure that aspects of meaning are accurately and fairly compared. We clarify the growing view in the literature that, rather than requiring multiple definitions or being split into different types, meaning is a multifaceted yet still unified concept. In so doing, we propose that meaning is an umbrella term. Meaning cannot be summed up with a short definition or list of features, but involves multiple complexities that are outlined in our framework. Specifically, three global facets are needed to describe meaning: a Signal Meaning Facet, an Interactant Meaning Facet, and a Resultant Meaning Facet. Most importantly, we show that such analyses are possible to apply as much to non-humans as to humans. We also emphasise that meaning nuances differ among non-human species, making a dichotomous approach to meaning questionable. Instead, we show that a multifaceted approach to meaning establishes how meaning appears within highly diverse examples of non-human communication, in ways consistent with the phenomenon's presence in human non-verbal communication and language(s). Therefore, without further recourse to 'functional' approaches that circumvent the critical question of whether any non-human meaning exists, we show that the concept of meaning is suitable for evolutionary biologists, behavioural ecologists, and others to study, to establish exactly which species exhibit meaning in their communication and in what ways.

A standard protocol to report discrete stage‐structured demographic information

Abstract Stage‐based demographic methods, such as matrix population models (MPMs), are powerful tools used to address a broad range of fundamental questions in ecology, evolutionary biology and conservation science. Accordingly, MPMs now exist for over 3000 species worldwide. These data are being digitised as an ongoing process and periodically released into two large open‐access online repositories: the COMPADRE Plant Matrix Database and the COMADRE Animal Matrix Database. During the last decade, data archiving and curation of COMPADRE and COMADRE, and subsequent comparative research, have revealed pronounced variation in how MPMs are parameterized and reported. Here, we summarise current issues related to the parameterisation and reporting of MPMs that arise most frequently and outline how they affect MPM construction, analysis, and interpretation. To quantify variation in how MPMs are reported, we present results from a survey identifying key aspects of MPMs that are frequently unreported in manuscripts. We then screen COMPADRE and COMADRE to quantify how often key pieces of information are omitted from manuscripts using MPMs. Over 80% of surveyed researchers (n = 60) state a clear benefit to adopting more standardised methodologies for reporting MPMs. Furthermore, over 85% of the 300 MPMs assessed from COMPADRE and COMADRE omitted one or more elements that are key to their accurate interpretation. Based on these insights, we identify fundamental issues that can arise from MPM construction and communication and provide suggestions to improve clarity, reproducibility and future research utilising MPMs and their required metadata. To fortify reproducibility and empower researchers to take full advantage of their demographic data, we introduce a standardised protocol to present MPMs in publications. This standard is linked to www.compadre‐db.org, so that authors wishing to archive their MPMs can do so prior to submission of publications, following examples from other open‐access repositories such as DRYAD, Figshare and Zenodo. Combining and standardising MPMs parameterized from populations around the globe and across the tree of life opens up powerful research opportunities in evolutionary biology, ecology and conservation research. However, this potential can only be fully realised by adopting standardised methods to ensure reproducibility.

ECR Spotlight – Chloe Fouilloux

ECR Spotlight is a series of interviews with early-career authors from a selection of papers published in Journal of Experimental Biology and aims to promote not only the diversity of early-career researchers (ECRs) working in experimental biology during our centenary year, but also the huge variety of animals and physiological systems that are essential for the ‘comparative’ approach. Chloe Fouilloux is an author on ‘ Visual environment of rearing sites affects larval response to perceived risk in poison frogs’, published in JEB. Chloe Fouilloux is a PhD researcher in the lab of Bibiana Rojas at University of Jyväskylä, Jyväskylä, Finland, investigating the evolutionary ecology of animals, especially with respect to decision-making and social relationships.

A tribute to Winfried Lampert: how he injected an integrative vision of evolutionary ecology into the aquatic sciences

A tribute to Winfried Lampert: how he injected an integrative vision of evolutionary ecology into the aquatic sciences

HerpSexDet: the herpetological database of sex determination and sex reversal

Wildlife exhibits various sex-determination systems where sex chromosomes and environmental temperatures may both contribute to individual sexual development. The causes and consequences of this variability are important questions for evolutionary ecology, especially in light of ongoing environmental change. Amphibians and reptiles are emerging as a key group for studying these questions, with new data accumulating acceleratingly. We collected empirical data from earlier databases, reviews and primary literature to create the most up-to-date database on herpetological sex determination. We named our database HerpSexDet, which currently features data on genetic and temperature-dependent sex determination as well as reports on sex reversal for a total of 192 amphibian and 697 reptile species. This dataset, which we will regularly update in the future, facilitates interspecific comparative studies on the evolution of sex determination and its consequences for species-specific traits such as life history and conservation status, and may also help guiding future research by identifying species or higher taxa that are potentially most enlightening for the study of environmentally driven sex reversal.

Evolutionary ecology of host competence after a chytrid outbreak in a naive amphibian community.

Naive multi-host communities include species that may differentially maintain, transmit and amplify novel pathogens; therefore, we expect species to fill distinct roles during infectious disease emergence. Characterizing these roles in wildlife communities is challenging because most disease emergence events are unpredictable. Here, we used field-collected data to investigate how species-specific attributes influenced the degree of exposure, probability of infection, and pathogen intensity, during the emergence of the fungal pathogen Batrachochytrium dendrobatidis (Bd) in a highly diverse tropical amphibian community. Our findings confirmed that ecological traits commonly evaluated as correlates of decline were positively associated with infection prevalence and intensity at the species level during the outbreak. We identified key hosts that disproportionally contributed to transmission dynamics in this community and found a signature of phylogenetic history in disease responses associated with increased pathogen exposure via shared life-history traits. Our findings establish a framework that could be applied in conservation efforts to identify key species driving disease dynamics under enzootics before reintroducing amphibians back into their original communities. Reintroductions of supersensitive hosts that are unable to overcome infections will limit the success of conservation programmes by amplifying the disease at the community level. This article is part of the theme issue 'Amphibian immunity: stress, disease and ecoimmunology'.

The seeds of ecological recovery in urbanization – Spatiotemporal evolution of ecological resiliency of Dianchi Lake Basin, China

As a result of years of monitoring the ecological resiliency of natural areas and cities, it has become clear that it is both important and often feasible to implement ecological and environmental restoration in conjunction with ongoing processes of landscape change development and urbanization. Ecological resiliency and spatiotemporal evolution studies can objectively reveal the resiliency of ecosystems to external disturbances. Ecological monitoring and assessment can also help planners understand regional ecological spatial differentiation patterns and provided data support for planning. In this paper we have analyzes quantitatively the interrelationships of ecological factors in Dianchi Lake Basin (DLB) over the past 30 years and explored the spatial and temporal dynamics of ecological resiliency. Based on remote sensing images and primary data in 1995, 2005, 2010, 2015, 2018, and 2022, we used the center of gravity migration and kernel density analysis to explore the spatial and temporal changes of ecological resiliency. We built the overall resiliency evaluation system using entropy weight in the TOPSIS model, and finally simulate the future changes based on CA-Markov (CA-MC) model. The results show that from 1995 to 2022, the ecological resiliency of land use and vegetation cover in DLB decreased substantially. An important finding was that the ecological resiliency of riparian buffer zone and landscape pattern were generally increasing. The distribution of barycenter movement and kernel density of different levels of ecological resiliency differed significantly and showed fluctuating changes. The extreme low resiliency and extremely resilient areas shift to the northeast, the mildly resilient areas shift to the northwest, and the highly resilient areas shift to the southeast. The overall resiliency level of DLB is predicted to slowly increase from 2022 to 2030 by deduction of the CA-MC model. Our analysis suggests that the study of the evolution of regional ecological resiliency can provide a timely understanding of regional ecological evolution patterns and propose ecological protection strategies.

Experimentally simulating the evolution-to-ecology connection: Divergent predator morphologies alter natural food webs

The idea that changing environmental conditions drive adaptive evolution is a pillar of evolutionary ecology. But, the opposite-that adaptive evolution alters ecological processes-has received far less attention yet is critical for eco-evolutionary dynamics. We assessed the ecological impact of divergent values in a key adaptive trait using 16 populations of the brown anole lizard (Anolis sagrei). Mirroring natural variation, we established islands with short- or long-limbed lizards at both low and high densities. We then monitored changes in lower trophic levels, finding that on islands with a high density of short-limbed lizards, web-spider densities decreased and plants grew more via an indirect positive effect, likely through an herbivore-mediated trophic cascade. Our experiment provides strong support for evolution-to-ecology connections in nature, likely closing an otherwise well-characterized eco-evolutionary feedback loop.

Adoption and feeding of fieldfare nestlings and fledglings by European blackbird.

Interspecific adoption is an intriguing topic in behavioral and evolutionary ecology. As it is a rare phenomenon, seldom documented in the literature, reports of interspecific adoption based on solid data are particularly valuable. A long-term and extensive monitoring programme involving a local population of European blackbirds (Turdus merula, hereafter blackbird) has yielded, among other things, observations of alloparental behavior exhibited by blackbirds toward fieldfare (Turdus pilaris) nestlings (a single nest, the first-ever record) and fledglings (12 cases in all). We discuss the observations in the context of the available literature.

Investigation of water quality and aquatic ecological succession of a newly constructed river replenished by reclaimed water in Beijing

The potential to create new ecosystems in rivers is possible through the use of reclaimed water as a replenishment source, although the long-term effects of this method are unknown. In this study, the water quality and aquatic ecological evolution of a newly constructed river replenished by reclaimed water in Beijing (the Jing River) were investigated, and the conventional water quality, phytoplankton indicators, and submerged plant growth conditions from October 2018 to December 2020 were analyzed. Spearman's correlation and redundancy analysis between possible influential environmental factors and algal indicators were conducted. The results show that the major water quality indicators could meet the water quality standards for landscape water. There were seven phyla present, including 322 species of phytoplankton. The phytoplankton density increased, followed by a decreasing trend. Phytoplankton densities at each monitoring site reached 10 × 106 to 25 × 106 cells/L in 2019 before decreasing in 2020, then ranging from 8 × 106 to 20 × 106 cells/L. Phytoplankton growth was influenced by changing water quality and ecosystems. Consequently, the submerged plant coverage rate gradually increased from 2018 (0%) to 2020 (26.27%–37.06%), as did biodiversity. Through the implementation of ecological restoration measures in the Jing River, the reclaimed water environment evolved into a more natural water environment, which could provide some reference for similar areas to use reclaimed water as a water replenishment source.

The draft genome sequence of the Japanese rhinoceros beetle Trypoxylus dichotomus septentrionalis towards an understanding of horn formation

The Japanese rhinoceros beetle Trypoxylus dichotomus is a giant beetle with distinctive exaggerated horns present on the head and prothoracic regions of the male. T. dichotomus has been used as a research model in various fields such as evolutionary developmental biology, ecology, ethology, biomimetics, and drug discovery. In this study, de novo assembly of 615 Mb, representing 80% of the genome estimated by flow cytometry, was obtained using the 10 × Chromium platform. The scaffold N50 length of the genome assembly was 8.02 Mb, with repetitive elements predicted to comprise 49.5% of the assembly. In total, 23,987 protein-coding genes were predicted in the genome. In addition, de novo assembly of the mitochondrial genome yielded a contig of 20,217 bp. We also analyzed the transcriptome by generating 16 RNA-seq libraries from a variety of tissues of both sexes and developmental stages, which allowed us to identify 13 co-expressed gene modules. We focused on the genes related to horn formation and obtained new insights into the evolution of the gene repertoire and sexual dimorphism as exemplified by the sex-specific splicing pattern of the doublesex gene. This genomic information will be an excellent resource for further functional and evolutionary analyses, including the evolutionary origin and genetic regulation of beetle horns and the molecular mechanisms underlying sexual dimorphism.

AraDiv: a dataset of functional traits and leaf hyperspectral reflectance of Arabidopsis thaliana

Data from functional trait databases have been increasingly used to address questions related to plant diversity and trait-environment relationships. However, such databases provide intraspecific data that combine individual records obtained from distinct populations at different sites and, hence, environmental conditions. This prevents distinguishing sources of variation (e.g., genetic-based variation vs. phenotypic plasticity), a necessary condition to test for adaptive processes and other determinants of plant phenotypic diversity. Consequently, individual traits measured under common growing conditions and encompassing within-species variation across the occupied geographic range have the potential to leverage trait databases with valuable data for functional and evolutionary ecology. Here, we recorded 16 functional traits and leaf hyperspectral reflectance (NIRS) data for 721 widely distributed Arabidopsis thaliana natural accessions grown in a common garden experiment. These data records, together with meteorological variables obtained during the experiment, were assembled to create the AraDiv dataset. AraDiv is a comprehensive dataset of A. thaliana’s intraspecific variability that can be explored to address questions at the interface of genetics and ecology.