Transport and micro-instability analysis in a JET H-mode plasma discharge 53212 during the pellet fueling operation is carried out using the BALDUR integrated predictive modeling code with a combination of the NCLASS neoclassical transport model and an anomalous core transport model (either Mixed B/gB or MMM95 model). In this work, the evolution of plasma current, plasma density and temperature profiles is carried out and, consequently, the plasma’s behaviors during the pellet operation can be observed. The NGS pellet model with the Grad-B drift effect included is used to describe pellet ablation and its behaviors when a pellet is launched into hot plasma. The simulation shows that after each pellet enters the plasma, there is a strong perturbation on the plasma causing a sudden change of both thermal and particle profiles, as well as the thermal and particle transports. For the simulation using MMM95 transport model, the change of both thermal and particle transports during pellet injection are found to be dominated by the transport due to the resistive ballooning modes due to the increase of collisionality and resistivity near the plasma edge. For the simulation based on mixed B/gB transport model, it is found that the change of transport during the pellet injection is dominated by the Bohm term. Micro-instability analysis of the plasma during the time of pellet operation is also carried out for the simulations based on MMM95 transport model. It is found that the ion temperature gradient mode is destabilized due to an increase of temperature gradient in the pellet effective region, while the trapped electron mode is stabilized due to an increase of collisionality in that region.