Using molecular data from three protein encoding genes and 49 taxa (98 specimens from 20 African countries), we provide an extended phylogeny of Ceratitis and investigate the evolution of stenophagy across clades. Bayesian tree reconstructions support previously proposed monophyletic lineages ( Pardalaspis, Pterandrus section A, Pterandrus section B + Ceratitis sensu stricto) and reveal the occurrence of two new monophyletic groups including Ceratalaspis/ Hoplolophomyia ( viz. Cl(A), and Cl(B) + H). The reconstruction of ancestral character states shows that stenophagy evolved repeatedly and independently in five different clades ( Podocarpus, Solanum, Strychnos, Tabernaemontana and Vepris feeders). The evolution of feeding preferences is closely related to the phylogenetic patterns of Ceratalaspis/ Hoplolophomyia whose sections include either polyphagous species ( Cl(A)) or stenophagous taxa ( Cl(B) + H) that are further subdivided in Vepris and Solanum feeders. The evolution of stenophagy in the genus Ceratits appears as the result of a process leading to the exploitation of “unconventional” fruits ( viz. toxic and/or not fleshy) and involving either metabolic adaptation to toxic plant compounds and/or the capability of penetrating fruits with thick cuticles.
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