This paper investigates the impact of equatorial wind stress on the equatorial Ekman transport during the Indian Ocean Dipole (IOD) mature phase. The results show that the equatorial zonal wind stress directly drives the meridional motion of seawater at the upper levels. In normal years, the zonal wind stress south of the equator is easterly and that north of the equator is westerly, which contributes to southward Ekman transport at the upper levels to form the climatological Indian Ocean shallow meridional overturning circulation. During the years of positive IOD events, abnormal easterly winds near the equator bring southward Ekman transport south of the equator while they bring northward Ekman transport north of the equator. This causes the seawater to move away from the equator and hence induces upwelling near the equator, which forms a pair of small circulation cells that are symmetric about the equator at the upper levels (approximately 100 m deep). The abnormal circulation cell south (north) of the equator strengthens (weakens) the southward (southward) motion south (north) of the equator. During years with negative IOD events, the opposite occurs. In addition, during the mature period of IOD, the remote sea surface temperature anomaly (SSTA) such as El Niño–Southern Oscillation (ENSO) may exert some influence on Ekman transport anomaly near the equator during the mature period of IOD.