The aim of this study was to investigate the mRNA expression of the two GABA B1 receptor isoforms and the GABA B2 subunit, in human postmortem control hippocampal sections and in sections resected from epilepsy patients using quantitative in situ hybridisation autoradiography. Utilising human control hippocampal sections it was shown that the oligonucleotides employed were specific to the receptor. Hippocampal slices from surgical specimens obtained from patients with hippocampal sclerosis and temporal lobe epilepsy were compared with neurologically normal postmortem control subjects for neuropathology and GABA B mRNA expression. Neuronal loss was observed in most of the hippocampal subregions, but in the subiculum no significant difference was detected. The localisation of GABA B1a and GABA B1b isoform mRNAs in human control hippocampal sections supported and extended earlier studies using the GABA B1 pan probe, which does not distinguish between the two GABA B1 isoforms. Moreover, the GABA B2 mRNA location confirmed the heterodimerisation of the receptor. Thus, although there was an apparent correlation between GABA B1b and GABA B2, GABA B1a exhibited no such relationship. GABA B1b and GABA B2 showed a similar intensity of expression whilst GABA B1a displayed a lower hybridisation signal. Comparison of the expression of the three mRNAs between control and epileptic subjects showed significant decreases or increases in different hippocampal subregions. GABA B isoforms and subunit mRNA expression per remaining neuron was significantly increased in the hilus and dentate gyrus. These results demonstrate that altered GABA B receptor mRNA expression occurs in human TLE; possibly the observed changes may also serve to counteract ongoing hyperexcitability.