This study investigates botanical remains from the Takarkori site in the Tadrart Acacus region (SW Libya) to reconstruct socio-economic and cultural characteristics of human groups during the Holocene. By analyzing micro- and macrofossils of plant origin, we aim to understand the availability and management of environmental resources and how plant taxa were used by humans. The exceptional preservation of archaeobotanical material across all occupation levels, facilitated by the region's geomorphological and environmental conditions, provides a unique opportunity to study pre-Pastoral and Pastoral Neolithic activities within a comprehensive diachronic framework. Our research extends previous investigations by examining the spatial distribution of archaeobotanical remains in association with site furniture and material correlates, offering insights into the functional use of space within the site. Also, the features of plant assemblages and their distribution patterns indicate the planning in the use of plant resources and the diverse uses beyond subsistence, including ritual and cultural practices. The findings contribute to a deeper understanding of Holocene environmental and cultural dynamics, highlighting the importance of archaeobotanical data in archaeological research.