In a previous paper, we pointed out the problem of missing data outside the detector range for continuous-variable entanglement verification and quantum key distribution, and we provided a straightforward solution based on entropic separability criteria (as those work better than variance-based criteria). We apply that solution here to the verification of time-frequency entanglement of photon pairs, particularly to the quantum key distribution scheme proposed by Nunn et al. [Opt. Express 21, 15959 (2013)]. We find that the scheme does lead to verifiable entanglement, but that transmission noise quickly destroys the ability to verify the entanglement.