Context.Accurate prediction of within-field crop yield in response to spatial and temporal variability provides essential information for farm managers to improve productivity and ensure optimal use of inputs. Understanding yield spatial and temporal variability cannot be solely addressed by crop modelling or remote sensing but by integrating the instantaneous spatial information from remote sensing and the temporal information from crop modelling. Sequential data assimilation techniques allow wheat and soil observations to be assimilated into the crop model while it evolves and evaluate model and observational uncertainties to improve the accuracy of crop monitoring and yield prediction. ObjectivesThe objective of this study was to comprehensively explore the potential yield estimation improvement by assimilating observations of all prognostic wheat and soil states, including various repeat intervals and accuracy, allowing recommendations on implementation to be made. MethodsThis study develops an Ensemble Kalman filter (EnKF) data assimilation framework for the APSIM-Wheat model and illustrates potential improvements in wheat yield estimation through a synthetic study. Through several scenarios, assimilation of wheat and soil observations into APSIM was explored, by assimilating these variables solely or collectively, and in various phenological stages.Results and conclusions.The results showed, under the specific weather and soil conditions assumed in this study, that while open-loop (no data assimilation) provided a yield estimation with a bias of 10.1%, assimilation in the flowering to end of grain filling stage reduced the bias to 1.4%, 2.9%, 4.4%, and 1.0% when constraining with leaf area index, leaf weight, stem weight, surface soil moisture observations, respectively. When assimilating in the floral initiation to the flowering stage, the yield estimation bias was reduced to 7.1%, 9.8%, 1.1%, and 1.2% when constraining with leaf nitrogen, stem nitrogen, top-layer soil ammonium‑nitrogen and nitrate‑nitrogen, respectively. Leaf area index, biomass and surface soil moisture are recommended for data assimilation especially with observations from remote sensing. SignificanceThis study developed a data assimilation framework for the APSIM-Wheat model and can be extended to over 20 crop modules integrated with APSIM. This synthetic study provided a exhaustive data assimilation experiment for wheat and soil states that are measurable by current techniques with a rigorous justification on uncertainties. It thus provides a guide for future agricultral data assimilation practices in choosing crop and soil states for assimilation, and for planning the timing and frequency of data collection. It should also inspire researchers to develop new techniques for measuring wheat states.
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