Streams In England Research Articles

Long‐term amelioration of acidity accelerates decomposition in headwater streams

The secondary production of culturally acidified streams is low, with a few species of generalist detritivores dominating invertebrate assemblages, while decomposition processes are impaired. In a series of lowland headwater streams in southern England, we measured the rate of cellulolytic decomposition and compared it with values measured three decades ago, when anthropogenic acidification was at its peak. We hypothesized that, if acidity has indeed ameliorated, the rate of decomposition will have accelerated, thus potentially supporting greater secondary production and the longer food chains that have been observed in some well-studied recovering freshwater systems. We used cellulose Shirley test cloth as a standardized bioassay to measure the rate of cellulolytic decomposition, via loss in tensile strength, for 31 streams in the Ashdown Forest over 7 days in summer 2011 and 49 days in winter 2012. We compared this with data from an otherwise identical study conducted in 1978 and 1979. In a secondary study, we determined whether decomposition followed a linear or logarithmic decay and, as Shirley cloth is no longer available, we tested an alternative in the form of readily available calico. Overall mean pH had increased markedly over the 32 years between the studies (from 6.0 to 6.7). In both the previous and contemporary studies, the relationship between decomposition and pH was strongest in winter, when pH reaches a seasonal minimum. As in the late 1970s, there was no relationship in 2011/2012 between pH and decay rate in summer. As postulated, decomposition in winter was significantly faster in 2011/2012 than in 1978/1979, with an average increase in decay rate of 18.1%. Recovery from acidification, due to decreased acidifying emissions and deposition, has led to an increase in the rate of cellulolytic decomposition. This response in a critical ecosystem process offers a potential explanation of one aspect of the limited biological recovery that has been observed so far, an increase in larger bodied predators including fish, which in turn leads to an increase in the length of food chains.

Conservation Genetics of Remnant Coastal Brook Trout Populations at the Southern Limit of Their Distribution: Population Structure and Effects of Stocking

AbstractWe examined genetic variation within and among a group of remnant coastal brook trout Salvelinus fontinalis populations along the coast of the northeastern United States. These populations occur at the southern limits of anadromy for this species and could form the foundation of a restored anadromous metapopulation. We also tested for genetic introgression between these populations and the hatchery source that has been used to stock these sites. The overall FST for the natural populations at 12 microsatellite loci was 0.145 (95% confidence interval, 0.108–0.183), and D was 0.225 (0.208–0.243). On average, 94.6% of individuals were correctly assigned to the population where they were collected. Our results suggest that there is little gene flow even between geographically proximate populations. We found little evidence that repeated historic stocking from a known hatchery source has led to genetic introgression into these wild coastal brook trout populations. One hybrid individual appeared to be a backcross between an F1 and a hatchery individual. Another hybrid individual could not be classified. Our results suggest that nonintrogressed and potentially locally adapted populations of brook trout persist in several small coastal New England streams. These populations should be the focus of future efforts to restore anadromous brook trout in this region.

Evaluation of Nature‐Like and Technical Fishways for the Passage of Alewives at Two Coastal Streams in New England

AbstractNature‐like fishways have been designed with the intent to reconnect river corridors and provide passage for all species occurring in a system. The approach is gaining popularity both in Europe and North America, but performance of these designs has not been quantitatively evaluated in a field setting for any North American species. Two nature‐like fishways and three technical fishways in New England were evaluated for passage of anadromous adult alewivesAlosa pseudoharengusby using passive integrated transponder (PIT) telemetry. A perturbation boulder rock ramp (32 m long; 4.2% slope) constructed in Town Brook (Plymouth, Massachusetts) passed 94% of the fish that made passage attempts, with most fish ascending the ramp in less than 22 min. In the East River (Guilford, Connecticut), a step‐pool bypass design (48 m long; 7.1% slope) passed only 40% of attempting fish, with a median transit time of 75 min. In Town Brook, a technical pool‐and‐weir fishway (14 m long; 14.3% slope) exhibited poor entry and poor passage for the fish. In contrast, in the East River, two technical steeppass fishways (3 m long; 29.6% and 9.6% slopes) passed the majority of available fish, although one of these steeppass fishways may have lacked sufficient flow to attract fish to the entrance. In both Town Brook and the East River, tagged fish passed rapidly downstream through all fishways after spawning. In the East River, the amount of time fish spent in the spawning habitat before migrating downstream ranged from 1 to 41 d. These studies demonstrate that some nature‐like and technical fishway designs can effectively facilitate passage of alewives, but a fishway's location in relation to a spillway is important, and further evaluations are required to more precisely identify the influence of the vertical drop per pool and the specific local hydraulics on alewife behaviors and passage performance.

Evaluating effects of water withdrawals and impoundments on fish assemblages in southern New England streams, USA

Abstract Balancing aquatic conservation and water supply is becoming a major global issue for urban landscapes. The purpose of this study was to evaluate the ecological effects of stream‐flow alterations via water withdrawals and impoundments on fish assemblage structure. Electric fishing data were collected at 33 wadeable streams in Connecticut, located in the Southern New England region of USA. Fish sampling was conducted directly downstream of water withdrawals for municipal and agricultural water supply, and study sites differed in potential water withdrawal rates and the presence of impoundments. Regression analysis showed that water withdrawal rate was more important than other natural and anthropogenic factors (e.g. landcover and stream size) in explaining several fish assemblage metrics. Stream sites with high withdrawal rates were generally characterised by lower proportions of fluvial dependent fishes (fish which need flowing water to complete a portion of their life history) and benthic invertivores (fish which feed on bottom‐dwelling stream insects in riffle habitat), and had a greater percent composition of macrohabitat generalists, particularly members of the family Centrarchidae. Some assemblage metrics responded linearly with increasing magnitude of water withdrawals, but others were non‐linear. Results are consistent with ecological theory that alteration of the natural flow regime will impact stream biota.

Consumer body composition and community structure in a stream is altered by pH

Summary1. Low pH inhibits microbial conditioning of leaf‐litter, which forms the principal energy input to many headwater streams. This reduces food quality and availability for the shredder assemblage, thereby creating a potential bottleneck in the flux of energy and biomass through acidified food webs.2. We explored the consequences of acidity on the well‐characterised community of Broadstone Stream in southeast England, by quantifying the physiological condition (protein and lipid content) of three dominant shredder species (Leuctra nigra, L. hippopus and Nemurella pictetii) and relating this to changes in the numerical abundance and biomass of invertebrates across a longitudinal pH gradient (5.3–6.5).3. Total taxon richness increased with pH, as did shredder diversity. The acid‐tolerant stonefly, L. nigra, exhibited a positive correlation between pH and protein content, but its abundance was suppressed in the less acid reaches. These results suggest that the impacts of environmental stressors might be manifested differently at the population (i.e. numerical and biomass abundance) versus the physiological (i.e. protein content of individuals) levels of organisation. Body composition of L. hippopus and N. pictetii did not exhibit any significant relationship with stream pH in the field.4. The survey data were corroborated with a laboratory rearing experiment using N. pictetii, in which survival rate, growth rate, and protein and lipid content of individuals were measured in stream water of differing pH and acid versus circumneutral microbial conditioning regimes. Acid‐conditioned leaves were associated with increased mortality and reduced protein content in consumers’ tissues, with acid water also having the latter effect.5. Our results suggest that biochemical constraints within key taxa might create energy flux bottlenecks in detrital‐based food webs, and that this could ultimately determine the productivity of the entire system. Hence assays of the body composition of macroinvertebrates could be an effective new tool that complements population level studies of the impacts of stressors in fresh waters.

Judging a Brook by Its Cover: The Relation between Ecological Condition of a Stream and Urban Land Cover in New England

The US Geological Survey conducted an urban land-use study in the New England Coastal Basins (NECB) area during 2001 to determine how urbanization relates to changes in the ecological condition of streams. Thirty sites were selected that differed in their level of watershed development (low to high). An urban intensity value was calculated for each site from 24 landscape variables. Together, these 30 values reppresented a gradient of urban intensity. Among various biological, chemical, and physical factors surveyed at each site, benthic invertebrate assemblages were sampled from stream riffles and also from multiple habitats along the length of the sampling reach. We use some of the NECB data to derive a four-variable urbanintensity index (NECB-UII), where each variable represents a distinct component of urbanization: increasing human presence, expanding infrastructure, landscape development, and riparian vegetation loss. Using the NECB-UII as a characterization of urbanization, we describe how landscape fragmentation occurs with urbanization and how changes in the invertebrate assemblages, represented by metrics of ecological condition, are related to urbanization. Metrics with a strong linear response included EPT taxa richness, percentage richness of non-insect taxa, and pollution-tolerance values. Additionally, we describe how these relations can help in estimating the expected condition of a stream for its level of urbanization, thereby establishing a baseline for evaluating possible affects from specific point-source stressors.

Earlier Spring Warming of Coastal Streams and Implications for Alewife Migration Timing

AbstractSeasonal temperature increases have been shown to correlate with changes in the migration timing of fish. We looked at existing temperature and fish count data for anadromous alewives Alosa pseudoharengus in several southern New England streams. Run initiation, defined as occurring when the first 5% of the total annual run migrated, was associated with 9°C. A weighted‐mean migration temperature, considered an overall indicator of total run timing, revealed that 13°C was a consistent predictor of run timing for one historic and three recent alewife streams over several years. Because historical and recent daily water temperatures with concurrent fish counts were unavailable for any one site, we used the occurrence of 9°C and 13°C stream temperatures to determine the magnitude of any detectable shift in the migration timing of alewives between the 1970s and recent years. Stream temperatures in the spring warmed to 13°C about 12 d earlier in recent years than they did in the 1970s. This implied that alewife runs occurred about 12 d earlier on average. Run initiations occurred about 13 d earlier. Management of the water supply to fish passage facilities may need to be adjusted to accommodate these shifts in migration timing.

Influences of seasonal flow regime on the fate and transport of fine particles and a dissolved solute in a New England stream

Fine particles are necessary for biogeochemical cycling but pose a risk to water quality if they are present in excess or carry sorbed contaminants. The objective of this work is to elucidate the effects of flow on the transport and retention of fine particles within a mountain stream and to compare particulate matter transport processes to those of a conservative solute tracer. We measured the migration of bromide (a conservative solute tracer) and micrometer‐sized titanium‐dioxide particles under three seasonal flow regimes in second‐order stream in Connecticut. A one‐dimensional transport model based upon the transient storage model was applied in inverse mode to the measured data to quantify solute and particle transport processes. Rates of particle movement by advection and longitudinal dispersion matched those of bromide. Transient, or temporary, storage influenced conservative solute transport, while particle storage was irreversible on the time scale of our experiments and likely dominated by deposition within the sediments of the hyporheic zone. Both solute transient storage and particle deposition increased with decreasing discharge.

In Situ Speciation Measurements of Trace Metals in Headwater Streams

Concentrations of Al, Fe, Mn, Ni, Cu, Cd, Pb, and Zn were measured using DGT (diffusive gradients in thin-films) devices deployed in situ in 34 headwater streams in Northern England. Mean values of filtered samples analyzed by ICP-MS (inductively coupled plasma mass spectrometry) were used, along with DOC (dissolved organic carbon), pH and major ions, to calculate the distribution of metal species using the speciation code WHAM. DGT-measured concentrations, [Me]DGT, of Zn and Cd were generally similar to concentrations in filtered samples, [Me]filt. For the other metals, [Me]DGT was similar to or lower than [Me]filt. Calculation of the maximum dynamic metal from the speciation predicted using WHAM showed that most of the lower values of [Cu]DGT could be attributed to the dominance of Cu-fulvic acid complexes, which diffuse more slowly than simple inorganic species. Similar calculations for Al, Pb, and Mn were consistent with appreciable proportions of these metals being present as colloids that are not simple complexes with humic substances. Differences between WHAM predictions and the measured [Ni]DGT indicated that WHAM used with the default binding parameters underestimates Ni binding to natural organic matter. Plots of [Me]DGT versus the ratio of bound metal to DOC provided slight evidence of heterogeneous binding of Pb and Cu, while results for Mn, Cd, and Zn were consistent with weak binding and complete lability.

The effect of farming practices on phosphorus transfer to a headwater stream in England

Characterization of phosphorus (P) sources in catchments is critical to the restoration of stream integrity following eutrophication. To better understand the effects of farming practices on P transfer in a small rural mixed farming catchment (Rosemaund), spatial and temporal patterns in P delivered from a field-drain (Foxbridge, 6 ha), and to two downstream stations (Jubilee, 31 ha and Belmont, 150 ha) were investigated in relation to detailed records on cultivation practices and fertilizer/manure P inputs over a 3-year period (1997–2000) with above-average rainfall. The Belmont catchment also included a farmstead and a small sewage treatment works (STW). The main source of P in drainflow (December–April) was the soil with flow-weighted concentrations of particulate P (PP) up to 2 mg L −1 and concentrations of dissolved-reactive P (DRP) (0.1–0.4 mg DRP L −1) above current riverine targets to limit eutrophication. Agricultural operations carried out in autumn/early winter sporadically increased concentrations of DRP (fertilizer/manure applications) and PP (cultivations) in drain/stream discharge, but only during events that produced small amounts of stormflow. Occasionally large DRP and PP concentrations in drainflow were also recorded during the ecologically sensitive summer months, but this was unrelated to any farming practice. Stream P concentrations were further influenced by processes of baseflow dilution, in-stream retention/release and discharges from the STW and farmstead. The results highlight the disparity between the timing of farming operations at this site (autumn/early winter), the main period of land drainage (winter/spring) and the main period of biological activity (spring and summer). A greater understanding of the ecological significance of variably timed P inputs to headwater streams is needed to develop effective catchment management.

The effects of stream canopy management on macroinvertebrate communities and juvenile salmonid production in a chalk stream

Abstract The effects of changes in shading (through riparian canopy removal and re‐growth) on juvenile salmon, Salmo salar L., trout, Salmo trutta L., and grayling, Thymallus thymallus (L.) populations, and macroinvertebrate biomass and species composition in a chalk stream in southern England were examined. Low levels of in‐stream weed growth, because of shading by closed tree canopy, diminished macroinvertebrate production and diversity. 0+ salmon and trout had lower densities under closed canopy, relative to adjacent open sites with substantial weed cover, where fish were also found to be larger. Canopy removal positively affected the growth of aquatic macrophytes and the availability of potential prey for juvenile salmonids. The findings have implications for the management of chalk streams, in particular, that riparian tree canopy should be managed to prevent complete closure, and excessive cutting of weed should be avoided where salmon production is below sustainable levels.

Impacts of episodic acidification on in-stream survival and physiological impairment of Atlantic salmon (Salmo salar) smolts

We conducted field studies to determine the levels of acid and aluminum (Al) that affect survival, smolt development, ion homeostasis, and stress in Atlantic salmon ( Salmo salar ) smolts in restoration streams of the Connecticut River in southern Vermont, USA. Fish were held in cages in five streams encompassing a wide range of acid and Al levels for two 6-day intervals during the peak of smolt development in late April and early May. Physiological parameters were unchanged from initial sampling at the hatchery and the high water quality reference site (pH > 7.0, inorganic Al < 12 μg·L–1). Mortality, substantial loss of plasma chloride, and gill Na+/K+-ATPase activity, and elevated gill Al occurred at sites with the lowest pH (5.4–5.6) and highest inorganic Al (50–80 μg·L–1). Moderate loss of plasma chloride, increased plasma cortisol and glucose, and moderately elevated gill Al occurred at less severely impacted sites. Gill Al was a better predictor of integrated physiological impacts than water chemistry alone. The results indicate that Al and low pH under field conditions in some New England streams can cause mortality and impair smolt development in juvenile Atlantic salmon and provide direct evidence that episodic acidification is impacting conservation and recovery of Atlantic salmon in the northeastern USA.

Atlantic salmon (Salmo salar) smolt production: the relative importance of survival and body growth

The complex life history of Atlantic salmon ( Salmo salar ) coupled with interacting abiotic and biotic factors leads to extreme demographic variability across the species’ range. Our goal was to evaluate the relative importance of survival and body growth in determining smolt production across space and time. We used passive integrated transponder tags and capture–mark–recapture analyses to estimate survival, emigration, and growth for six cohorts of presmolt Atlantic salmon in two streams (three cohorts per stream) in New England, USA. We observed remarkable among-cohort consistency in mean monthly survival during a 17-month period from age-0+ autumn to age-2+ spring yet high variability in monthly survival over shorter time intervals (seasons). Despite this latter variability, survival did not translate into among-cohort differences in proportions of age-2+ versus age-3+ smolts. Alternatively, the high variability across seasons and cohorts in mean individual growth rate did lead to differences in within-cohort proportions of age-2+ versus age-3+ smolts (regardless of stream). We conclude that in our two small study streams, variability in growth and size impacted smolt age and, ultimately, smolt production. Density-dependent effects on growth at the scale of the entire study site represent a possible mechanism underlying our observations.

Acidity of machine-made snow and its effect on pH and aluminum speciation in New England streams during spring thaw

The pH of machine-made snow and its effect on an acid-sensitive watershed in Vermont were studied. Spring runoff from snowmaking was found to be less acidic and to contain less dissolved inorganic aluminum. Dissolved inorganic aluminum has been associated with damage to aquatic life. The extensive use of machine-made snow by the ski industry in most of the northeast region of the US may be beneficial to aquatic life.

Use of tolerance values to diagnose water-quality stressors to aquatic biota in New England streams

Abstract Identification of stressors related to biological impairment is critical to biological assessments. We applied nationally derived tolerance indicator values for four water-quality variables to fish and benthic macroinvertebrate assemblages at 29 sites along an urban gradient in New England. Tolerance indicator values (TIVs), as biologically based predictors of water-quality variables, were determined for dissolved oxygen, nitrite plus nitrate (nitrate), total phosphorus, and water temperature for each site based on observed biological assemblages (TIVO), and for expected assemblages (TIVE). The quotient method, based on a ratio of the TIVs for observed and expected assemblages (tolerance units), was used to diagnose potential water-quality stressors. In addition, the ratio of measured water-quality values to water-quality criteria (water-quality units) was calculated for each water-quality variable to assess measured water-quality stressors. Results from a RIVPACS predictive model for benthic macroinvertebrates and Bray-Curtis dissimilarity for fish were used to classify sites into categories of good or impaired ecological condition. Significant differences were detected between good and impaired sites for all biological tolerance units (fish and benthic macroinvertebrate assemblages averaged) except for nitrate (P = 0.480), and for all water-quality units except for nitrate (P = 0.183). Diagnosis of water-quality stressors at selected sites was, in general, consistent with State-reported causes of impairment. Tolerance units for benthic macroinvertebrate and fish assemblages were significantly correlated for water temperature (P = 0.001, r = 0.63), dissolved oxygen (P = 0.001, r = 0.61), and total phosphorus (P = 0.001, r = 0.61), but not for nitrate (P = 0.059, r = −0.35). Differences between the two assemblages in site-specific diagnosis of water-quality stressors may be the result of differences in nitrate tolerance.

Effects of mute swan grazing on a keystone macrophyte

Summary1. This study describes the early summer foraging behaviour of mute swans (Cygnus olor) on the River Frome, a highly productive chalk stream in southern England in which Ranunculus penicillatus pseudofluitans is the dominant macrophyte.2. A daily maximum of 41 ± 2.5 swans were present along the 1.1 km study reach during the study period (late May to the end of June). The river was the primary feeding habitat. Feeding activity on the river at dawn and dusk was much lower than during daylight, but we cannot rule out the possibility that swans fed during the hours of darkness.3. The effects of herbivory on R. pseudofluitans biomass and morphology were quantified. Biomass was lower in grazed areas and swans grazed selectively on leaves in preference to stems. A lower proportion of stems from grazed areas possessed intact stem apices and flowering of the plant was reduced in grazed areas.4. A model, based on the swans’ daily consumption, was used to predict the grazing pressure of swans on R. pseudofluitans. The model accurately predicted the number of bird days supported by the study site, only if grazing was assumed to severely reduce R. pseudofluitans growth. The proportion of the initial R. pseudofluitans biomass consumed by a fixed number of swans was predicted to be greater when the habitat area was smaller, initial R. pseudofluitans biomass was lower and R. pseudofluitans was of lower food value.5. We concluded that the flux of N and P through the study reach was largely unaffected by swan activity. The quality of R. pseudofluitans mesohabitat (the plant as habitat for invertebrates and fish) was significantly reduced by grazing which also indirectly contributed to reduced roughness (Manning's n) and by inference water depth. Wetted habitat area for fish and invertebrates would also be lowered over the summer period as a consequence of the reduction in water depth. It was estimated that, while grazing, an individual swan may eat the same mass of invertebrates per day as a 300‐g trout.6. There is a need to manage the conflict between mute swans and the keystone macrophyte, R. pseudofluitans, in chalk streams, and the modelling approach used here offers a potentially useful tool for this purpose.

Trout affect the density, activity and feeding of a larval plethodontid salamander

Summary1. Ecologists have struggled to describe general patterns in the impacts of predators on stream prey, particularly at large, realistic spatial and temporal scales. Among the confounding variables in many systems is the presence of multiple predators whose interactions can be complex and unpredictable.2. We studied the interactions between brook trout (Salvelinus fontinalis) and larval two‐lined salamanders (Eurycea bislineata), two dominant vertebrate predators in New England stream systems, by examining patterns of two‐lined salamander abundance in stream reaches above and below waterfalls that are barriers to fish dispersal, by measuring the effects of trout on salamander density and activity using a large‐scale manipulation of brook trout presence, and by conducting a small‐scale laboratory experiment to study how brook trout and larval two‐lined salamanders affect each other's prey consumption.3. We captured more salamanders above waterfalls, in the absence of trout, than below waterfalls where trout were present. Salamander density and daytime activity decreased following trout addition to streams, and salamander activity shifted from aperiodic to more nocturnal with fish. Analysis of stomach contents from our laboratory experiment revealed that salamanders eat fewer prey with trout, but trout eat more prey in the presence of salamanders.4. We suggest that as predators in streams, salamanders can influence invertebrate prey communities both directly and through density‐ and trait‐mediated interactions with other predators.

Habitat heterogeneity and disturbance influence patterns of community temporal variability in a small temperate stream

Both habitat heterogeneity and disturbance can profoundly influence ecological systems at many levels of biological and ecological organization. However, the joint influences of heterogeneity and disturbance on temporal variability in communities have received little attention despite the intense homogenizing influence of human activity. I performed a field manipulation of substrate heterogeneity in a small New England stream, and measured changes in benthic macroinvertebrate communities for 100 days—a period that included both a severe drought and a flood. Generally, community variability decreased with increasing substrate heterogeneity. However, within sampling intervals, this relationship tended to fluctuate through time, apparently tracking changes in hydrology. At the beginning of the experiment, community temporal variability clearly decreased along a gradient of increasing substrate heterogeneity—a result consistent with an observational study performed the previous year. During the subsequent weeks, droughts and flooding created exceptionally high variability in both hydrology and benthic macroinvertebrate community structure resulting in the disappearance of this relationship. However, during the last weeks of the experiment when hydrologic conditions were relatively more stable, the negatively sloped relationship between community temporal variability and habitat heterogeneity reemerged and mimicked relationships observed both early in the experiment and in the previous year’s study. High habitat heterogeneity may promote temporal stability through several mechanisms including stabilization of resources and increased refugia from minor disturbances or predation. However, the results of this experiment suggest that severe disturbance events can create large-scale environmental variability that effectively swamps the influence of habitat heterogeneity, illustrating that a thorough understanding of community temporal variability in natural systems will necessarily consider sources of environmental variability at multiple spatial and temporal scales.

Phosphatase activities of the aquatic moss Warnstorfia fluitans (Hedw.) Loeske from an acidic stream in North-East England

A study was made of the aquatic environment, tissue nutrient composition and surface phosphatase activities of the aquatic moss Warnstorfia fluitans in Brandon Pithouse Stream, a small acidic stream in N-E England. The water, which originates from an underground spring, had been pH 2.6 for at least 30 years, but about 3.9 during the present study. The moss was by far the most abundant phototroph during all this period. Seasonal changes in aqueous nitrogen and phosphorus fractions were measured over a 2-year period near the source. Most of the filtrable N and P were at times organic, but the very high N:P ratio (even if organic N is excluded) suggests that only organic phosphate is likely to be important for the moss. There was a high peak in organic phosphate in late spring in both study years. Surface phosphomonoesterase (PMEase) and phosphodiesterase (PDEase) activities were highly correlated in the field and in axenic culture, though there were some differences in response to environmental factors. Axenic material showed higher PMEase and PDEase activities when grown with organic P than with inorganic P. Although the data suggest that internal P content is an important factor influencing phosphatase activities, PDEase activity was especially marked when the moss was grown with the diester, DNA, as P source, indicating that at least one of its surface phosphatases can also respond directly to the environment.

The effects of sewage-treatment-works effluent on epilithic bacterial and algal communities of three streams in northern england

The responses of epilithic bacterial and algal communities to sewage-treatment-works (STW) effluent were studied in three streams in North Yorkshire, England, using both conventional microbiological techniques and the techniques of molecular genomics. Cod Beck, Thornton Beck and the River Wiske, were visited in May–June 2000 and January 2001 and the epilithic communities on submerged stones were sampled to determine chlorophyll-a, leucine assimilation, bacterial abundance, identity and abundance of microalgae, and epilithon dry and organic weights. Additionally, DNA from the epilithon of stones, collected in March–April and November 2000, was extracted, and samples were amplified using universal primers appropriate, respectively, for bacteria [Muyzer et al., 1993. Applied and Environmental Microbiology 59: 695–700] and microscopic phototrophs [Nubel et al., 1997. Applied and Environmental Microbiology 63: 3327–3332] followed by DGGE (Denaturing Gradient Gel Electrophoresis). Differences in algal community composition and abundance were greater between streams than between sites upstream and downstream of the STW outfalls. DGGE banding profiles of bacterial communities revealed grouping according to stream, and not the formation of communities characteristic of downstream sites; seasonal variation was also evident. Thus the discharge of STW effluent to the streams did not bring about the development of communities that are characteristically associated with organic pollution. Changes in composition and structure of bacterial and micro-algal epilithic communities were detected, but the relatively high quality effluents had only mild effects, not altering the environments sufficiently to override the natural differences between the three streams.