Interaction Energy Research Articles

Ab initio calculation of the interaction between neutral and charged silicon nanoclusters

In dusty plasmas, the formation of nanoclusters marks the beginning of the coagulation stage, leading to the rapid generation of larger particles. In this work, we present an overview of the interaction between silicon nanoclusters (SNCs) of about 1 nm diameter within the framework of density functional theory (DFT), taking into account chemical, van der Waals, and multipolar electrostatic interactions. Two types of SNCs are considered: particles composed entirely of silicon (Si30, Si40, Si50, Si60) and a particle whose dangling bonds are occupied by hydrogen atoms (Si29H24). The interaction energies obtained between two neutral or weakly charged SNCs all have a repulsive part at a short separation distance, followed by a minimum corresponding to a stable state of coagulation due to chemical bonds between the particles. In particular, our calculations show that: (1) the Hamaker constant (which characterizes the London-type van der Waals interaction) depends on the pair of identical SNCs, (2) the multipolar electrostatic contribution at large separation distances allows the extraction of the charged SNC polarization coefficient, and (3) the coagulation rates between SNCs are significantly higher than previously estimated.

Uncovering the toxic effects and adaptive mechanisms of aminated polystyrene nanoplastics on microbes in sludge anaerobic digestion system: Insight from extracellular to intracellular

The impacts of polystyrene nanoplastics (PS NPs) with amino functional groups on sludge anaerobic digestion process and the underlying microbial feedbacks remains unclear. Herein, PS NPs coated with and without amino functional groups were employed to explore their impacts on the sludge digestion performance. Experimental results showed that aminated PS NPs (PS-NH2) deteriorated the methane yield and hydrolysis rate. The Derjaguin-Landau-Verwey-Overbeek theory analysis suggested that the PS-NH2 decreased the interaction energy barrier, making it easier to contact with sludge and disrupting the structure of extracellular polymeric substances. Metagenomic analysis showed that the abundance of functional microbes (e.g., Longilinea, Leptolinea, and Methanosarcina) decreased, accompanied with lower network complexity and fewer keystone taxa. Molecular docking revealed that PS-NH2 occupy the antioxidant enzyme active binding sites through hydrogen bonding and hydrophobic interactions, impairing degradation of reactive oxygen species. The severe intracellular oxidative stress up-regulated genes associated with quorum sensing (e.g., luxI and luxR) and protein biosynthesis (e.g., algA, trpG and trpE), and further inducing compact tryptophan-like proteins as a defense against NPs. These findings provide new understanding of the toxic effects from PS-NH2 in biological systems and offer valuable insights into the regulation strategies aimed at alleviating NPs inhibition.

Compressive behaviors and deformation mechanism of carbon fiber reinforced epoxy composites: A microscopic and molecular dynamics perspective

AbstractInvestigating the macro‐mechanical properties of polymer composites at the nanoscale is a challenging topic. Here we report the compressive performances of carbon fiber‐reinforced epoxy composites using molecular dynamics (MD) simulations. The evolution of microstructure and microscopic energy, including free volume, radius of gyration, dihedral angle, potential energy, and interaction energy, has been investigated to characterize compressive behaviors at the nanoscale. Molecular chains gradually bend, and the movement space of the molecular chains decreases during compression loading. The radius of gyration and dihedral angle are deformed into a state of irreversible plasticity to accommodate the microstructural transformation. The interaction energy increases and subsequently declines as the carbon fiber/epoxy interface gets closer, reflecting the transition of the internal structure. The inhomogeneity and interfacial concentration distribution of stress, and local molecular stiffness under various strains have been obtained to reveal the nanoscopic mechanism of epoxy failure and interface delamination during compression. This study reveals the compression behaviors and deformation mechanism of carbon fiber‐reinforced epoxy composites at the molecular level, providing directions and possibilities for molecular design and structural optimization of composites.Highlights The nanoscopic compression deformation of CFRP composites is studied. Microstructural evolution and conformation transformation are revealed. The evolution and transition of microscopic energy are analyzed. Micro‐mechanism of epoxy deformation and interface delamination is elucidated.

Non-linear optical properties of hybrid materials of (OLi3) superalkali doped perylene diimide (PDI) derivative: comprehensively study via silico-technique

PDI-Imidazole and PDI-Imidazole combined with OLi3 (OLi3@PDI-Imidazole) were the two types of materials that we examined in this study to see how light behaved in each of the complex. To explore this, we employed the three different method such as rB3LYP/6–31G(d, p) DFT, CAM-B3LYP and WB97XD. The impact of PDI-Imidazole and OLi3@PDI-Imidazole geometries, maximum absorption ( λmax ), FMO, vertical ionization energies ( EVI ), Binding Energies ( Eb ), Hyperpolarizabilities, DOS, Dipole Moments (μ), ESP, EDDM, and Global Reactivity parameters have been examined. The type of contacts as well as the vibrational frequencies of PDI-Imidazole and OLi3@PDI-Imidazole were investigated using NCl, iso-surface, Raman spectroscopy, and IR research. The electron transport characteristics of the OLi3@PDI-Imidazole surface was significantly enhanced in comparison to the PDI-Imidazole surface by lowering the bandgap energies from 1.27 eV to 1.03 eV. In contrast to the pure PDI-Imidazole surface, which had lower values for linear polarizability ( α0 ) (547.08 au) and first hyperpolarizability ( β0 )(201.133au), OLi3@PDI-Imidazole surface displayed significant enhancements in linear polarizability ( α0 = 706.472 au) and first hyperpolarizability ( β0 = 21314.360 au). It was observed by TD-DFT calculations that all the compounds had appreciable improvements in their interaction energies, HOMO–LUMO and UV–vis absorption and vertical ionization potential. Future development of nonlinear optical (NLO) devices has been discovered to benefit from the addition of OLi3 to the PDI-Imidazole surface.

Experimental and theoretical studies of alkyl 2-(2,4,6,8-tetraaryl-3,7-diazabicyclo[3.3.1]nonan-9-ylidene)hydrazine carboxylates: Synthesis, spectroscopic, crystal structure, Hirshfeld surface, and antimicrobial studies

The nine alkyl 2-(2,4,6,8-Tetraaryl-3,7-diazabicyclo[3.3.1]nonan-9-ylidene)hydrazine carboxylates having bicyclic bispidine core were synthesized and characterized using FT-IR, NMR, and mass spectra. Further confirmation of the structure and positioning of the groups was obtained using single crystal XRD investigation. The analysis revealed that one piperidine ring adopts a chair and another a boat form. The aryl groups in the chair conformation are positioned equatorially, whereas those in the boat conformation are orientated axially. The carbazate group (C=N-NH-COOR) aligned the center of the two piperidine rings, with a small deviation towards the boat conformation piperidine ring. The dihedral angle between the chair and boat conformations of the piperidine ring (2f) is 48.51 Å and 45.12 Å, respectively. Hirshfeld and 2D fingerprint analysis show considerable H···H bonding interactions in the crystal. The intermolecular interaction and mechanical stability of crystals were investigated using interaction energy and crystal void analysis. Reduced density gradient and localized orbital locator analyses were used to investigate intramolecular interactions and electron delocalization. The molecule's higher and lower electron densities were investigated utilizing frontier molecular orbital analysis and Molecular Electrostatic Potential. The antimicrobial activity of the compounds was investigated using four bacterial and two fungus strains.

Model and Energy Bounds for a Two-Dimensional System of Electrons Localized in Concentric Rings.

We study a two-dimensional system of interacting electrons confined in equidistant planar circular rings. The electrons are considered spinless and each of them is localized in one ring. While confined to such ring orbits, each electron interacts with the remaining ones by means of a standard Coulomb interaction potential. The classical version of this two-dimensional quantum model can be viewed as representing a system of electrons orbiting planar equidistant concentric rings where the kinetic energy may be discarded when one is searching for the lowest possible energy. Within this framework, the lowest possible energy of the system is the one that minimizes the total Coulomb interaction energy. This is the equilibrium energy that is numerically determined with high accuracy by using the simulated annealing method. This process allows us to obtain both the equilibrium energy and position configuration for different system sizes. The adopted semi-classical approach allows us to provide reliable approximations for the quantum ground state energy of the corresponding quantum system. The model considered in this work represents an interesting problem for studies of low-dimensional systems, with echoes that resonate with developments in nanoscience and nanomaterials.

Local potential energy density – A DFT analysis and the local binding energy in complexes with multiple interactions

A recently developed method, so-called local potential energy density, LPED, provides the binding energy density of intra/intermolecular interactions. The LPED cannot directly give the binding energy of intra/intermolecular interactions. However, it can indirectly give the binding energy through the linear equation between LPED and supramolecular binding energy, SME. In addition, the LPED can be used to obtain the SME of local or individual interactions indirectly for the case of complexes with multiple interactions, which cannot be obtained for any other method to our knowledge. The calculation of the LPED was evaluated with three different levels of theory using density functional methods. The linearity of LPED and SME between the reference level of theory (ωB97X-D/aug-cc-pVTZ) and the other levels of theory are similar among the studied levels of theory. In addition, LPED was used indirectly to obtain the local binding energy of intermolecular interactions of complexes with multiple interactions, such as the EDTA-Ca+2 and the fosfomycin-Ca+2.

Revving Up a Designed Copper Catecholate Porous Organic Polymer for Its Potent Ethylene Adsorption than Ethane.

The potential to produce high-purity C2H4 has made ethylene-selective adsorbents for ethane (C2H6)/ethylene (C2H4) gas mixture separation appealing as viable substitutes for traditional cryogenic distillation. In this aspect, porous organic polymers (POPs) are anticipated to become the next-generation potential adsorbent due to their easily customizable functions and functional sites suitable for gas separation. This article reports the selective C2H4 adsorption over C2H6 using microporous copper(I)-coordinated POP (Cu@Di-POP) via fine-tuning of the π complexation and pore size. The specially designed adsorbent has the ideal pore size and coordinated Cu(I) ions to form π-complexation with C2H4 molecules, which enabled it to adsorb C2H4 (at 1 bar, 24.9, 18.9, and 13.4 cm3 g-1 at 273, 298, and 323 K, respectively) while significantly reducing C2H6 adsorption (at 1 bar, 16.9, 12.7, and 8.8 cm3 g-1 at 273, 298, and 323 K, respectively). At 1 bar, Cu@Di-POP exhibited IAST selectivities of 6.09, 5.60, and 4.13 for C2H4/C2H6 at 273, 298, and 323 K, respectively, suggesting its C2H4 selective behavior, which was further confirmed from the experimental breakthrough measurement. Furthermore, the computational studies carried out with density functional theory highlighted an enhanced charge distribution leading to dπ-pπ conjugation between C2H4 π-electrons and Cu d-electrons, thereby showing a relatively higher interaction energy of -37.23 kcal/mol with C2H4 as compared to -16.06 kcal/mol with C2H6 gas molecules.

Elucidation of the Decomplexation and Reverse Migration Mechanism of Uranyl Ions from the Oil Phase to the Aqueous Phase Using Microsecond (0.2 μs) Molecular Dynamics Simulations.

Interphase ion transfer is ubiquitous in chemistry, physics, biology, and various engineering sciences. Ion transfer from the aqueous phase to the oil phase or vice versa is a complex chemical phenomenon, and its fundamental understanding is crucial for efficient and economical mass transfer. This ion transfer is much more complex for radionuclide metal ions. Therefore, an attempt has been made to elucidate the decomplexation and mechanism of reverse migration of uranyl ions from the loaded oil phase to the aqueous phase using large time-scale molecular dynamics simulations (microseconds) and density functional theory (DFT). The strength of the metal-ligand complex is the key factor for stripping among other mass transfer parameters. Stronger the metal-ligand complex, the lower the tendency for reverse migration into the aqueous phase, which was demonstrated by three different ligands for reverse migration using water as the stripping agent. The interaction energy of the metal-ligand complex has been calculated using DFT. The reverse migration is validated by the distance between the centers of mass. Higher interface thickness and lower interfacial tension belong to N,N,N',N'-tetra-octyldiglycolamide (TODGA), which are favorable for mass transfer across the liquid-liquid interface. The computed distribution coefficient (KD) is favorable for tributyl phosphate (TBP) and tri-iso-amyl phosphate (TiAP), whereas TODGA shows a higher KD, indicating a less favorable value for reverse migration. The distance between the uranyl ion and the TODGA molecule confirms that the entrapment of uranyl ions in the TODGA phase might be attributed to aggregation. Further, the aggregation tendency of TODGA molecules reduces the back extraction and the recovery of uranyl ions into the aqueous phase. The present MD results might be important for predicting an efficient back-extracting agent for the recovery of the metal ions from the oil phase.

Semi-transparent boundary in Lee–Wick electrodynamics

In this paper, we investigate certain aspects of Lee–Wick electrodynamics near a semitransparent planar mirror. Specifically, we derive the modified propagator for the Lee–Wick gauge field in the presence of the mirror and conduct a detailed analysis of the interaction energy and the interaction force that arise between the mirror and a stationary point-like charge. We demonstrate that there are several peculiarities in this interaction compared to the results obtained for Maxwell electrodynamics. Our focus is on the divergences mitigated by the Podolsky mass term.

Charge-Assisted Anion-π Interaction and Hydrogen Bonding Involving Alkylpyridinium Cations.

Competition and cooperation of charge-assisted anion-π interactions and hydrogen bonding were explored in the solid state and in solutions of 1-ethyl-4-carbomethoxypyridinium iodide, the compound utilized by Kosower to calculate solvent polarity Z-indices. X-ray structural analysis of this salt revealed multiple short contacts of iodide anions with hydrogen atoms and aromatic rings of pyridinium cations. Geometric characteristics, quantum theory of atoms in molecules (QTAIM), and noncovalent interaction (NCI) analysis of these contacts indicated comparable interaction energies of the anion-π and hydrogen bonding between iodide and pyridinium cation. 1H NMR (indicating the presence of the hydrogen-bonded complexes) and UV-vis measurements (which were consistent with the formation of anion-π associations) pointed out that both these supramolecular interactions also coexist in solutions. The comparable interaction energies (ΔE) of these modes were confirmed by the DFT computations. Also, while the variations of ΔE with the dielectric constant of the solvents for the complexes of iodide with the neutral π-acceptors were related to the increase of the effective radii of hydrogen- or anion-π bonded iodides, the changes in ΔE for the complexes with pyridinium followed interaction energies between two unit charges. However, the distinction of the bonding in hydrogen-bonded and anion-π complexes of iodide with pyridinium led to a switch of their relative energies with an increase of the polarity of the medium.

Introducing KICK-MEP: exploring potential energy surfaces in systems with significant non-covalent interactions.

Exploring potential energy surfaces (PES) is fundamental in computational chemistry, as it provides insights into the relationship between molecular energy, geometry, and chemical reactivity. We introduce Kick-MEP, a hybrid method for exploring the PES of atomic and molecular clusters, particularly those dominated by non-covalent interactions. Kick-MEP computes the Coulomb integral between the maximum and minimum electrostatic potential values on a 0.001 a.u. electron density isosurface for two interacting fragments. This approach efficiently estimates interaction energies and selects low-energy configurations at reduced computational cost. Kick-MEP was evaluated on silicon-lithium clusters, water clusters, and thymol encapsulated within Cucurbit[7]uril, consistently identifying the lowest energy structures, including global minima and relevant local minima. Kick-MEP generates an initial population of molecular structures using the stochastic Kick algorithm, which combines two molecular fragments (A and B). The molecular electrostatic potential (MEP) values on a 0.001 a.u. electron density isosurface for each fragment are used to compute the Coulomb integral between them. Structures with the lowest Coulomb integral are selected and refined through gradient-based optimization and DFT calculations at the PBE0-D3/Def2-TZVP level. Molecular docking simulations for the thymol-Cucurbit[7]uril complex using AutoDock Vina were performed for benchmarking. Kick-MEP was validated across different molecular systems, demonstrating its effectiveness in identifying the lowest energy structures, including global minima and relevant local minima, while maintaining a low computational cost.

Electrostatically embedded symmetry-adapted perturbation theory.

Symmetry-adapted perturbation theory (SAPT) is an abinitio approach that directly computes noncovalent interaction energies in terms of electrostatics, exchange repulsion, induction/polarization, and London dispersion components. Due to its high computational scaling, routine applications of even the lowest order of SAPT are typically limited to a few hundred atoms. To address this limitation, we report here the addition of electrostatic embedding to the SAPT (EE-SAPT) and ISAPT (EE-ISAPT) methods. We illustrate the embedding scheme using water trimer as a prototype example. Then, we show that EE-SAPT/EE-ISAPT can be applied for efficiently and accurately computing noncovalent interactions in large systems, including solvated dimers and protein-ligand systems. In the latter application, particular care must be taken to properly handle the quantum mechanics/molecular mechanics boundary when it cuts covalent bonds. We investigate various schemes for handling charges near this boundary and demonstrate which are most effective in the context of charge-embedded SAPT.

End Group Effects on Anion Binding in Tetraglycine Peptide: A Computational Study.

The importance of anions in various processes has led to a search for molecules that can effectively recognize and interact with these anions. This study explores how the tetraglycine (Gly)4 peptide in its zwitterionic, neutral, and terminally capped forms acts as a receptor for H2PO4- and HSO4- anions within the framework of supramolecular host-guest chemistry. Using molecular dynamics (MD) simulations, we obtained the conformations of the receptor-anion complexes. Density functional theory (DFT), quantifies the complexes' interaction energies in both gas and solvent phases. Proton transfer within the zwitterionic complex with H2PO4- anion alters peptide charge distribution, affecting its conformation and binding site arrangement, as analysed by quantum mechanics/molecular mechanics (QM/MM) methods. Symmetry-adapted perturbation theory (SAPT) and noncovalent interactions analysis highlight the role of electrostatic interactions in these receptor-anion complexes. It emphasizes the key interactions such as N-H···O and O-H···O=C between the peptide backbone and anions and elucidates the molecular recognition mechanism driven by crucial noncovalent interactions. The termination of the peptide's end groups modulates anion binding sites from the backbone to the charged N-terminal, resulting in distinct binding sites. Our findings provide insights for designing peptides tailored to function as anion receptors in diverse supramolecular chemistry applications.

On the Potential Energy Surface of the Pyrene Dimer

Knowledge of reliable geometries and associated intermolecular interaction energy () values at key fragments of the potential energy surface (PES) in the gas phase is indispensable for the modeling of various properties of the pyrene dimer (PYD) and other important aggregate systems of a comparatively large size (ca. 50 atoms). The performance of the domain-based local pair natural orbital (DLPNO) variant of the coupled-cluster theory with singles, doubles and perturbative triples in the complete basis set limit [CCSD(T)/CBS] method for highly accurate predictions of the at a variety of regions of the PES was established for a representative set of pi-stacked dimers, which also includes the PYD. For geometries with the distance between stacked monomers close to a value of such a distance in the minimum structure, an excellent agreement between the canonical CCSD(T)/CBS results and their DLPNO counterparts was found. This finding enabled us to accurately characterize the lowest-lying configurations of the PYD, and the physical origin of their stabilization was thoroughly analyzed. The proposed DLPNO-CCSD(T)/CBS procedure should be applied with the aim of safely locating a global minimum of the PES and firmly establishing the pertaining of even larger dimers in studies of packing motifs of organic electronic devices and other novel materials.

Synthesis, vibrational, thermal, topological, electronic, electrochemical stability and DFT studies of new DABCO based ionic liquids

The design of new ILs with different anions could provide interesting physico-chemical properties and for these reasons, the knowledge about the synthesis, the thermal, vibrational, topological, electronic, electrochemical properties and interaction between the selected cation-anion in these ILs are important subjects. Therefore, the understanding about these properties of these compounds is an important subject of study. In this work, we studied three ionic liquids based on the 1-decyl-1,4-diazabicyclo[2.2.2]octane, DABCO-cation, where the corresponding anions were [Br]-, [PF6]-, and [N(SO₂CF₃)₂]-. The syntheses of these bicyclic DABCO ionic liquids are based on an alkylation reaction of 1,4-diazabicyclo[2.2.2] octane and 1-bromodecanefollowed by anion exchange. The obtained ILs are characterized by 1H, 13C, 19F and 31P-NMR spectroscopy. Vibrational spectroscopy studies are conducted by infrared (FTIR/ATR) and Raman spectroscopy in the wavenumber range 600–4000 cm-1 and 45–3500 cm-1, respectively. Furthermore, the thermal stabilities were investigated using the thermogravimetric analysis (TGA) and differential scanning calorimetry (DSC) methods. Results indicate that the thermal stability follow the order [C10DABCO][Br]<[C10DABCO][PF6]<[C10DABCO][N(SO₂CF₃)₂]. Additionally, the structural parameters, electrostatic potential (ESP) maps, interaction energies, non-covalent interaction (NCI), atoms in molecule (AIM) analysis, natural bond orbital (NBO), frontier molecular orbital (FMO) analysis and Electrochemical window (ECW) are studied and analyzed by means of DFT calculations at the M06–2X-GD3/AUG–cc–pVDZ level of theory.

Binary imidazolium based aqueous ionic liquid droplet on a rough surface: a molecular dynamics study

Ionic liquids (ILs) have garnered immense attention due to their tunable physicochemical properties. In this study, we delve into the wetting behaviour and interfacial properties of aqueous binary IL mixtures containing [EMIM] [BF4] and [HMIM] [BF4] on both smooth and rough graphite surfaces. Employing classical molecular dynamics simulations, we systematically explored the effects of IL concentration and surface morphology on wetting phenomena. To ensure the equilibrium of the systems, we began by calculating the interaction energies between the components. Subsequently, contact angles were computed, shedding light on the wetting characteristics of the aqueous binary IL mixtures. We meticulously examined the density profiles of the IL systems from the substrate to unravel the dominance of one IL over the other, exploiting the hydrophilic nature of [EMIM] [BF4] and the hydrophobic nature of [HMIM] [BF4]. A comprehensive analysis of hydrogen bond distribution allowed us to discern the intricate nature of these aqueous binary IL droplets. We probed the changes in intermolecular forces within the aqueous IL solution by investigating surface tensions. The tunability of these ILs emerges as a significant aspect of our study, paving the way for their tailored application in engineering and scientific domains. Schematic diagram showing the density distribution of hydrophilic and hydrophobic ILs ([EMIM] [BF4] and [HMIM] [BF4]) in water and also the hydrogen bond (HB) distribution of anion ([BF4]−) water inside the droplet on a pillared surface with a surface fraction ( f ) of 0.4 and pillar height of H = 4 .

Validation of experimental results for polyhedral oligomeric silsesquioxane, carbon nanotube and functionalized carbon nanotube/polymer nanocomposites through density functional theory study

The mechanical and thermal properties of polymer nanocomposites could be influenced by different parameters. Interfacial interaction between nanomaterial and polymer composite can effectively influence the properties of nanocomposite. In this paper, the interaction between carbon nanotube (CNT), functionalized carbon nanotube with Amin (CNT-Amin), and Polyhedral Oligomeric Silsesquioxane (POSS), absorbing on PA/EVA composite surface theoretically were investigated based on the density functional theory (DFT) calculations. The interaction energy of −36.64 kJ/mol between PA and CNT-Amin and −22.31 kJ/mol between EVA and CNT-Amin means that the absorption of CNT-Amin on PA and EVA monomer are stronger than CNT and POSS which could affect the mechanical and thermal properties of the nanocomposites. However, the interaction between the polymer composite and the nanomaterials was physisorption. Additionally, thermal and mechanical tests were conducted on nanocomposite samples. Thermal and mechanical results show that the DFT calculations are in good agreement with the experiment. DSC analysis shows that the melting temperature for PA in PA/EVA/CNT-Amin changed from 221.6 to 225.2 °C and crystallization temperature from 188.8 to 191.9 °C which illustrates that the CNT-Amin nanomaterial adsorbed to PA in PA/EVA composite. Finally, mechanical properties show that the modulus of PA/EVA/CNT-Amin nanocomposite changed from 307.4 to 327.2 MPa compared to neat PA/EVA composite emphasizing that the interaction between CNT-Amin nanomaterial and PA improves the strength of the nanocomposite and in addition, EVA adsorbs the CNT which affected the strain of the nanocomposite at break by 16 % which corresponds to the calculation result prediction.

Synthesis, characterization, biological activity, computational evaluation and molecular docking simulation of dimeric Cu(II) carboxylate complexes

Copper(II) carboxylate complexes are important in biological fields. In this study, five new dinuclear Cu(II) complexes having the general formulae [Cu2(Cl-PAA)2(DMSO)2] (1), [Cu2(Cl-PAA)2(phen)2] (2), [Cu2(Cl-PAA)2(bipy)2] (3), [Cu2(Cl-PAA)2(py)2] (4), [Cu2(Cl-PAA)2(Cl-Py)2] (5) were synthesized and characterized by FTIR and UV–Vis spectrophotometry. FTIR study supported the monodentate nature of the carboxylate in complexes 2 and 3 while bidentate bridging behavior of carboxylate was observed in complexes 1, 4 and 5. UV–Vis study revealed the presence of d-d transition in visible region, while charge transfer band was observed in ultraviolet region. Antimicrobial activities of complexes 1–5 were studied among which complexes 1, 2 and 4 showed good activities. The results of antioxidant assay demonstrated that free radical scavenging activity by Cu(II) complex containing 1,10-phenanthroline was higher compared to other complexes. All the synthesized complexes were optimized by DFT-d-based DMol3 module in Material Studio. After that, the quantum chemical parameters containing hardness, softness, and electrophilicity were calculated. Based on value of (ω), complex 2 showed the best biological activity that supported experimental studies. All complexes were investigated by molecular docking with cytochrome P450 14 alpha-sterol demethylase (1ea1), the docking findings demonstrated that complex 2 had the highest interaction with cytochrome P450 due to the biggest interaction energy of complex 2 as compared with other complexes. In addition, according to corrosion studies, complex 2 showed highest coating on the iron (110) surface protecting the iron from corrosion due to high adsorption value.

Peculiar trapping behavior of porous organic nanocage CC1 towards H2S, SF6, SF4, SOCl2 and SO2; A DFT Perspective

The current study explores the trapping of harmful gases using porous organic cage CC1, a covalently bound imine cage with accessible voids. Using WB97XD/6-311G(d, p) theory level, the research computes CC1 and its complexes with pollutants like H2S, SF6, SF4, SOCl2, and SO2. DOS and FMO analyses are performed at DFT/ B3LYP/6-311G(d, p) theoretical level. Interaction energy, NCI, QTAIM, EDD, NBO, charge dissociation, FMO, DOS, and MEP studies provide a detailed insight into the analytes@CC1 complexation. Interaction energies (−4.49 to −0.34 eV) show strong trapping of SOCl2 and SF4 while, slight trapping of H2S within the cavity of CC1. Thermodynamic parameters confirm these findings. Analyses (NCI, QTAIM) indicate strong non-covalent interactions, especially for SOCl2 and SF4. NBO analysis reveals charge transfer from analytes to the cage, except for H2S. EDD analysis is also implemented to verify NBO charge transfer. This study highlights CC1′s peculiar trapping behaviour for the considered analytes.