Endophyte Interactions Research Articles

Agronomic advantages conferred by endophyte infection of perennial ryegrass (Lolium perenne L.) and tall fescue (Festuca arundinacea Schreb.) in Australia

Perennial ryegrass and tall fescue are key grasses of sown pastures in the high-rainfall zone of south-eastern Australia. Ryegrass in naturalised pastures, and in sown seed, is widely infected with Neotyphodium fungal endophytes, with toxic endophyte strains occasionally causing toxicosis in livestock. Endophyte infection is also beneficial in sown grasslands, assisting ryegrass hosts to overcome biotic stresses, and tall fescue hosts to overcome biotic and abiotic stresses. We review the literature for Australia and present new data, to examine the agronomic effects of endophyte. Frequency of endophyte infection in old, perennial ryegrass pastures and ecotype-based cultivars is high and, in all pastures, increases with time, providing evidence for endophyte-infected plants having an agronomic advantage over endophyte-free plants. Within a cultivar, agronomic field experiments have compared endophyte-infected with endophyte-free swards. Endophyte significantly improved ryegrass establishment in seven of 19 measurements taken from 12 trials. In mature ryegrass pastures, over half of the experiments found advantages to endophyte infection. Tall fescues infected with a selected endophyte (‘AR542’) had improved agronomic performance relative to endophyte-free in a majority of experiments, and on occasions, the endophyte was essential for tall fescue persistence. Cultivar × endophyte interactions occurred but were inconsistent. In high-stress environments, endophyte was more important for agronomic performance than difference between cultivars. The relative importance of cultivar and endophyte is discussed, with elite cultivars that are adapted to the region and are infected with elite endophytes being the best avenue to capture the benefits and minimise detrimental endophyte effects on livestock. The major drivers are likely to be insect pests and drought, but evidence is limited.

Root endophyte symbiosis in vitro between the ectomycorrhizal basidiomycete Tricholoma matsutake and the arbuscular mycorrhizal plant Prunus speciosa

We previously reported that Tricholoma matsutake and Tricholoma fulvocastaneum, ectomycorrhizal basidiomycetes that associate with Pinaceae and Fagaceae, respectively, in the Northern Hemisphere, could interact in vitro as a root endophyte of somatic plants of Cedrela odorata (Meliaceae), which naturally harbors arbuscular mycorrhizal fungi in South America, to form a characteristic rhizospheric colony or "shiro". We questioned whether this phenomenon could have occurred because of plant-microbe interactions between geographically separated species that never encounter one another in nature. In the present study, we document that these fungi formed root endophyte interactions and shiro within 140days of inoculation with somatic plants of Prunus speciosa (=Cerasus speciosa, Rosaceae), a wild cherry tree that naturally harbors arbuscular mycorrhizal fungi in Japan. Compared with C. odorata, infected P. speciosa plants had less mycelial sheath surrounding the exodermis, and the older the roots, especially main roots, the more hyphae penetrated. In addition, a large number of juvenile roots were not associated with hyphae. We concluded that such root endophyte interactions were not events isolated to the interactions between exotic plants and microbes but could occur generally in vitro. Our pure culture system with a somatic plant allowed these fungi to express symbiosis-related phenotypes that varied with the plant host; these traits are innately programmed but suppressed in nature and could be useful in genetic analyses of plant-fungal symbiosis.

Endophyte-mediated effects on the growth and physiology of Achnatherum sibiricum are conditional on both N and P availability.

The interaction of endophyte–grass associations are conditional on nitrogen (N) availability, but the reported responses of these associations to N are inconsistent. We hypothesized that this inconsistency is caused, at least in part, by phosphorus (P) availability. In this experiment, we compared the performance of endophyte-infected (EI) and endophyte-free (EF) Achnatherum sibiricum subjected to four treatments comprising a factorial combination of two levels of N (N+ vs. N−, i.e. N supply vs. N deficiency) and two levels of P (P+ vs. P−, i.e. P supply vs. P deficiency) availability. The results showed that A. sibiricum–Neotyphodium associations were conditional on both N and P availability, but more conditional on N than P. Under N+P− conditions, endophyte infection significantly improved acid phosphatase activity of EI plants, such that the biomass of EI plants was not affected by P deficiency (i.e. similar growth to N+P+ conditions), and resulted in more biomass in EI than EF plants. Under N−P+ conditions, biomass of both EI and EF decreased compared with N+P+; however, EI biomass decreased slowly by decreasing leaf N concentration more rapidly but allocating higher fractions of N to photosynthetic machinery compared with EF plants. This change of N allocation not only improved photosynthetic ability of EI plants but also significantly increased their biomass. Under N−P− conditions, EI plants allocated higher fractions of N to photosynthesis and had greater P concentrations in roots, but there was no significant difference in biomass between EI and EF plants. Our results support the hypothesis that endophyte–grass interactions are dependent on both N and P availability. However, we did not find a clear cost of endophyte infection in A. sibiricum.

Root endophyte interaction between ectomycorrhizal basidiomycete Tricholoma matsutake and arbuscular mycorrhizal tree Cedrela odorata, allowing in vitro synthesis of rhizospheric “shiro”

The ectomycorrhizal basidiomycete Tricholoma matsutake associates with members of the Pinaceae such as Pinus densiflora (red pine), forming a rhizospheric colony or "shiro," which produces the prized "matsutake" mushroom. We investigated whether the host specificity of T. matsutake to conifers is innately determined using somatic plants of Cedrela odorata, a tropical broad-leaved tree (Meliaceae) that naturally harbors arbuscular mycorrhizal fungi. We found that T. matsutake could form in vitro shiro with C. odorata 140days after inoculation, as with P. densiflora. The shiro was typically aromatic like that of P. densiflora. However, this was a root endophytic interaction unlike the mycorrhizal association with P. densiflora. Infected plants had epidermal tissues and thick exodermal tissues outside the inner cortex. The mycelial sheath surrounded the outside of the epidermis, and the hyphae penetrated into intra- and intercellular spaces, often forming hyphal bundles or a pseudoparenchymatous organization. However, the hyphae grew only in the direction of vascular bundles and did not form Hartig nets. Tricholoma fulvocastaneum or "false matsutake" naturally associates with Fagaceae and was also able to associate with C. odorata as a root endophyte. With T. matsutake, C. odorata generated a number of roots and showed greatly enhanced vigor, while with T. fulvocastaneum, it generated a smaller number of roots and showed somewhat lesser vigor. We argue that the host-plant specificity of ectomycorrhizal matsutake is not innately determined, and that somatic arbuscular mycorrhizal plants have a great potential to form mutualistic relationships with ectomycorrhizal fungi.

Microscopy of some interactions between Botryosphaeriaceae species and grapevine tissues

This study investigated the endophytic interactions between Botryosphaeriaceae pathogens and their woody hosts and the role of wounds in development of infection of green tissues. At 2 and 3 months after inoculating trunks of 2 year old grapevine plants with Neofusiciccum australe, N. luteum, N. parvum or Diplodia mutila, sap samples provided no evidence of pathogen propagules, indicating that the dieback symptoms observed at a distance from the lesions on inoculated sections of the trunks were not due to internally transmitted propagules. However, longitudinal sections cut from beyond trunk lesions showed hyphae of the four fungi grew within xylem vessels, which was consistent with endophytic fungal development observed in previous experiments. When conidia of N. luteum were inoculated onto green shoots and leaves of potted grapevines, which were wounded or non-wounded, and excised or attached to living plants, scanning electron microscope studies showed that conidial development was significantly affected by the condition of tissues. On detached and wounded leaf and shoot surfaces, most conidia had germinated by 3 h after inoculation and by 24 h had developed into networks of mycelium. On attached and wounded leaf and shoot surfaces it took 24 h for most conidia to germinate. However, when green tissues were attached and non-wounded, conidia did not adhere or germinate, all conidia being shed from the tissues within 24 h. These studies have provided explanations for phenomena observed during infection studies and have demonstrated that the pathogen-host interactions are complex, warranting further examination of the physiology of the interactions.

The type III secretion system is necessary for the development of a pathogenic and endophytic interaction between Herbaspirillum rubrisubalbicans and Poaceae

BackgroundHerbaspirillum rubrisubalbicans was first identified as a bacterial plant pathogen, causing the mottled stripe disease in sugarcane. H. rubrisubalbicans can also associate with various plants of economic interest in a non pathogenic manner.ResultsA 21 kb DNA region of the H. rubrisubalbicans genome contains a cluster of 26 hrp/hrc genes encoding for the type three secretion system (T3SS) proteins. To investigate the contribution of T3SS to the plant-bacterial interaction process we generated mutant strains of H. rubrisubalbicans M1 carrying a Tn5 insertion in both the hrcN and hrpE genes. H. rubrisulbalbicans hrpE and hrcN mutant strains of the T3SS system failed to cause the mottled stripe disease in the sugarcane susceptible variety B-4362. These mutant strains also did not produce lesions on Vigna unguiculata leaves. Oryza sativa and Zea mays colonization experiments showed that mutations in hrpE and hrcN genes reduced the capacity of H. rubrisulbalbicans to colonize these plants, suggesting that hrpE and hrcN genes are involved in the endophytic colonization.ConclusionsOur results indicate that the T3SS of H. rubrisubalbicans is necessary for the development of the mottled stripe disease and endophytic colonization of rice.

Epicoccum nigrum P16, a sugarcane endophyte, produces antifungal compounds and induces root growth.

BackgroundSugarcane is one of the most important crops in Brazil, mainly because of its use in biofuel production. Recent studies have sought to determine the role of sugarcane endophytic microbial diversity in microorganism-plant interactions, and their biotechnological potential. Epicoccum nigrum is an important sugarcane endophytic fungus that has been associated with the biological control of phytopathogens, and the production of secondary metabolites. In spite of several studies carried out to define the better conditions to use E. nigrum in different crops, little is known about the establishment of an endophytic interaction, and its potential effects on plant physiology.Methodology/Principal FindingsWe report an approach based on inoculation followed by re-isolation, molecular monitoring, microscopic analysis, plant growth responses to fungal colonization, and antimicrobial activity tests to study the basic aspects of the E. nigrum endophytic interaction with sugarcane, and the effects of colonization on plant physiology. The results indicate that E. nigrum was capable of increasing the root system biomass and producing compounds that inhibit the in vitro growth of sugarcane pathogens Fusarium verticillioides, Colletotrichum falcatum, Ceratocystis paradoxa, and Xanthomomas albilineans. In addition, E. nigrum preferentially colonizes the sugarcane surface and, occasionally, the endophytic environment.Conclusions/SignificanceOur work demonstrates that E. nigrum has great potential for sugarcane crop application because it is capable of increasing the root system biomass and controlling pathogens. The study of the basic aspects of the interaction of E. nigrum with sugarcane demonstrated the facultative endophytism of E. nigrum and its preference for the phylloplane environment, which should be considered in future studies of biocontrol using this species. In addition, this work contributes to the knowledge of the interaction of this ubiquitous endophyte with the host plant, and also to a better use of microbial endophytes in agriculture.

An endophytic fungus reduces herbivory in its recently colonised grass host: a food-choice experiment on common voles, weeping alkaligrass and Epichloë typhina

The interactions of endophytes with plants are believed to evolve over time from parasitic to mutualistic, and in the seed-transmitted fungal endophytes, these interactions are conventionally treated as mutualistic. The weeping alkaligrass Puccinellia distans has recently dispersed to new habitats in Europe, where it was colonised by the seed-transmitted fungus Epichloe typhina. The E. typhina-infected weeping alkaligrass has a fertility advantage over -uninfected plants, but this advantage is held only over shorter time scales. We assess the antiherbivore value of E. typhina in mature weeping alkaligrass against common voles Microtus arvalis, a herbivore naturally co-occurring with weeping alkaligrass. In two consecutive food-choice tests conducted in a lab, we examined feeding by naive voles on E. typhina-infected (E+) and -uninfected grass (E−) originating from Central Europe. In the first test, all voles consumed comparable amounts of E+ biomass and E− biomass. In the subsequent test, the voles reduced their feeding rates by 57 %, but E+ food was avoided twice as frequently as E− food (75 vs. 33 % reduction). This result suggests that toxins produced by E. typhina repel herbivores soon after the first contact. We show that in addition to its direct fitness consequences, endophyte-mediated resistance to herbivory increases the fertility advantage of E. typhina-infected weeping alkaligrass. This effect can increase the ability of weeping alkaligrass to invade habitats with intense herbivory.

Consequences of simultaneous interactions of fungal endophytes and arbuscular mycorrhizal fungi with a shared host grass

Plants simultaneously associate with multiple microbial symbionts throughout their lifetimes. To address the question of whether the effects of simultaneous symbionts are contingent on the specific identities, we conducted a greenhouse experiment manipulating the presence and identities of arbuscular mycorrhizal fungi (AMF) and fungal endophytes on the shared host grass Elymus hystrix. Each plant host was inoculated with one of two AMF species having varying effects on host growth, or a sterile soil control. Further, we used naturally occurring endophyte‐infected (E+) and uninfected (E–) individuals from two populations of the endophyte Epichloë elymi that varied in their interaction with E. hystrix. We then measured responses of plants, AMF, and fungal endophytes. Overall, we found that the combined effects of AMF and fungal endophytes on plant growth were additive, reflecting the mutualistic quality of each symbiont independently interacting with host plants. However, fungal endophyte infection differentially altered hyphal colonization of the two AMF species and the identity of the coinfecting AMF species affected fungal endophyte fitness traits. The results of this study demonstrate that the outcome of interspecific symbiotic interactions varies with partner identity such that the effects of simultaneous symbioses can not be generalized.

A new currency for mutualism? Fungal endophytes alter antioxidant activity in hosts responding to drought

Fungal endophytes have significant effects on host performance including but not limited to changes in reproductive output, as well as, biotic and abiotic stress tolerance. The ultimate mechanisms for resistance to herbivory have been documented in a number of fungal-plant symbiota and involve the production of alkaloids by the fungus. Alkaloids have thus been defined as a currency responsible for increased host resistance to herbivory. We provide support for the hypothesis that another currency may be responsible for increased host tolerance to abiotic stress resulting from endophyte colonization; namely antioxidants. We report comparatively higher activity of antioxidants in endophyte colonized hosts resulting from abiotic stress and propose antioxidants are another currency via which mutualistic interactions between fungal endophytes and their hosts can occur. We recognize fungal endophyte interactions are diverse and complex and include antagonisms, commensalisms, and mutualisms.

Flagella Mediate Endophytic Competence Rather Than Act as MAMPS in Rice–Azoarcus sp. Strain BH72 Interactions

Azoarcus sp. strain BH72 is an endophytic betaproteobacterium able to colonize rice roots without induction of visible disease symptoms. BH72 possesses one polar flagellum. The genome harbors three copies of putative fliC genes, generally encoding the major structural protein flagellin. It is not clear whether, in endophytic interactions, flagella mediate endophytic competence or act as MAMPs (microbe-associated molecular patterns) inducing plant defense responses. Therefore, possible functions of the three FliC proteins were investigated. Only fliC3 was found to be highly expressed in pure culture and in association with rice roots and to be required for bacterial motility, suggesting that it encodes the major flagellin. Endophytic colonization of rice roots was significantly reduced in the in-frame deletion mutant, while the establishment of microcolonies on the root surface was not affected. Moreover, an elicitation of defense responses related to FliC3 was not observed. In conclusion, our data support the hypothesis that FliC3 does not play a major role as a MAMP but is required for endophytic colonization in the Azoarcus-rice interaction, most likely for spreading inside the plant.

Widespread occurrence of endophytic Labyrinthula spp. in northern European eelgrass Zostera marina beds

Seagrasses worldwide are commonly infected by endophytic protists of the genus Labyrinthula. To date, the nature of interaction of endophyte and host is not well understood. In eelgrass (Zostera marina) Labyrinthula zosterae may become virulent (pathogenic) and lead to the loss of entire sea grass beds. One of the best known examples of any marine epidemic were outbreaks of the ´wasting disease´ on both sides of the Atlantic in the 1930s, but smaller infestations have been reported until recently. Up to now, detection of infection by Labyrinthula was based on the wasting index, i.e. the relative area of leaf lesions or microscopy, while genetic data are virtually absent. We characterized a ~1400 base pair portion of the 18S small subunit rDNA in L. zosterae isolates (N=41) from six northern European sites and one southern location (Adriatic Sea) in order to assess identity and potential diversity of endophytic protists. Because there are indications that low salinity impedes Labyrinthula growth, sampling sites included a wide range of salinities from 5-34 psu. A search against the non-redundant GENBANK data base revealed that most isolates are 99% similar to the only L. zosterae 18S sequence available from the data base at all but the Finish site (salinity values 5-7 psu). At the latter site, a different Labyrinthula species occurred, which was also found in fully marine Wadden Sea cultures. A third species was detected in Skagerrak, south-western Baltic and North Sea samples (20-25 psu). We conclude that L. zosterae is widespread among northern European eelgrass sites across wide ranges of salinity.

Diversity of nodule-endophytic agrobacteria-like strains associated with different grain legumes in Tunisia

This study represents the first report describing the genetic diversity of nodule-endophytic agrobacteria isolated from diverse legumes and their phylogenetic relationships with the valid species of agrobacteria, as well as the non-recognized genomospecies of the former Agrobacterium tumefaciens ( Rhizobium radiobacter). The genetic diversity of a collection of 18 non-nodulating agrobacteria-like strains, previously isolated from root nodules of Vicia faba, Cicer arietinum and Phaseolus vulgaris from different geographical regions of Tunisia, was studied by REP-PCR and PCR-RFLP of the 16S-23S rDNA IGS, as well as by sequence analysis of the 16S rDNA and the housekeeping genes recA and atpD. The aim of the work was to study the genetic diversity of the different isolates and to check for any host-specificity. The results from the different techniques were congruent and suggested a specific interaction for P. vulgaris, whereas no specific endophytic interaction was observed for V. faba and C. arietinum. The phylogenetic analysis clearly indicated that some isolates were affiliated to R. radiobacter or to its non-recognized genomic species (genomovars G2, G4 and G9). However, the other isolates probably constitute new species within Rhizobium ( Agrobacterium) and Shinella.

Plant and Endophyte Effect on Fiber, N, and P Concentrations in Tall Fescue

Tall fescue (Lolium arundinaceum) infected with an endophyte (Neotyphodium spp.) generally has agronomic advantages over endophyte-free tall fescue. The objective of this study was to determine if endophyte presence (E+) or absence (E−) in three tall fescue genotypes affects concentrations of acid detergent fiber (ADF), neutral detergent fiber (NDF), nitrogen (N), and phosphorus (P) in field and greenhouse studies. E+ plants had higher concentrations of ADF and NDF (nonsignificant in one genotype) in the field study. Endophyte lowered N concentration in the field from 19.2 to 18.5 g . Various interactions between genotype, endophyte, and maturity were significant for NDF, N, and P in both field and greenhouse studies. This interaction occurred because the effect of the endophyte increased or decreased fiber, N, and P content of tall fescue depending upon plant genotype. This genotype by endophyte interaction should be kept in mind as novel endophytes are selected and placed into tall fescue cultivar selections, this interaction could alter fiber, N and P accumulation of the plants which depending upon plant genotype could result in a positive or negative response.

Endophytic fungal diversity in Theobroma cacao (cacao) and T. grandiflorum (cupuaçu) trees and their potential for growth promotion and biocontrol of black-pod disease

The endophytic niches of plants are a rich source of microbes that can directly and indirectly promote plant protection, growth and development. The diversity of culturable endophytic fungi from stems and branches of Theobroma cacao (cacao) and Theobroma grandiflorum (cupuaçu) trees growing in the Amazon region of Brazil was assessed. The collection of fungal endophytic isolates obtained was applied in field experiments to evaluate their potential as biocontrol agents against Phytophthora palmivora, the causal agent of the black-pod rot disease of cacao, one of the most important pathogens in cocoa-producing regions worldwide. The isolated endophytic fungi from 60 traditional, farmer-planted, healthy cacao and 10 cupuaçu plants were cultured in PDA under conditions inducing sporulation. Isolates were classified based upon the morphological characteristics of their cultures and reproductive structures. Spore suspensions from a total of 103 isolates that could be classified at least up to genus level were tested against P. palmivora in pods attached to cacao trees in the field. Results indicated that ∼70 % of isolates showed biocontrol effects to a certain extent, suggesting that culturable endophytic fungal biodiversity in this system is of a mostly mutualistic type of interaction with the host. Eight isolates from genera Trichoderma (reference isolate), Pestalotiopsis, Curvularia, Tolypocladium and Fusarium showed the highest level of activity against the pathogen, and were further characterized. All demonstrated their endophytic nature by colonizing axenic cacao plantlets, and confirmed their biocontrol activity on attached pods trials by showing significant decrease in disease severity in relation to the positive control. None, however, showed detectable growth-promotion effects. Aspects related to endophytic biodiversity and host–pathogen–endophyte interactions in the environment of this study were discussed on the context of developing sustainable strategies for biological control of black-pod rot of cacao.

The Use of Beneficial Microbial Endophytes for Plant Biomass and Stress Tolerance Improvement

Endophytes are microorganisms that live within host plants for at least part of their life and do not cause apparent symptoms of diseases. In general, beneficial endophytes promote host plant growth, increase plant nutrient uptake, inhibit plant pathogen growth, reduce disease severity, and enhance tolerance to environmental stresses. As sustainable and renewable agricultural production (including current biofuel and bioenergy crops) increases in prominence, endophytic microorganisms will play important roles and offer environmentally-friendly methods to increase productivity while reducing chemical inputs. This review discusses various aspects of beneficial fungal and bacterial endophyte interactions with plants, including the physiological and molecular mechanisms by which they benefit plant performance. We also discuss the potential for genetic modification of endophytes with useful genes, which could be used to impart additional traits following inoculation with the genetically engineered endophytes. Finally, we review US-issued patents over the past decade which relate to the use of fungal and bacterial endophytes for plant growth and stress tolerance improvement.

Proteome of Gluconacetobacter diazotrophicus co-cultivated with sugarcane plantlets

Gluconacetobacter diazotrophicus is a micro-aerobic bacterium able to fix atmospheric nitrogen in endophytic mode. A proteomic approach was used to analyze proteins differentially expressed in the presence and absence of sugarcane plantlets. Two-dimensional gel electrophoresis (2-DE) showed 42 spots with altered levels of expression. Analysis of these spots by matrix-assisted laser desorption ionization time-of-flight in tandem (MALDI-TOF-TOF) identified 38 proteins. Differentially expressed proteins were associated with carbohydrate and energy metabolism, folding, sorting and degradation processes, and transcription and translation. Among proteins expressed in co-cultivated bacteria, four belong to membrane systems; others, like a transcription elongation factor (GreA), a 60 kDa chaperonin (GroEL), and an outer membrane lipoprotein (Omp16) have also been described in other plant-bacteria associations, indicating a common protein expression pattern as a result of symbiosis. A high protein content of 60kDa chaperonin isoforms was detected as non-differentially expressed proteins of the bacteria proteome. These results allow the assessment of the physiological significance of specific proteins to G. diazotrophicus metabolism and to the pathways involved in bacteria-host endophytic interaction.

Endophytic Bacteria from Ocimum sanctum and Their Yield Enhancing Capabilities

Endophytes are beneficial microbes that reside intercellularly inside the plants. Interaction of endophytes with the host plants and their function within their host are important to address ecological relevance of endophyte. Four endophytic bacteria OS-9, OS-10, OS-11, and OS-12 were isolated from healthy leaves of Ocimum sanctum. These isolated microbes were screened in dual culture against various phytopathogenic fungi viz. Rhizoctonia solani, Sclerotium rolfsii, Fusarium solani, Alternaria solani, and Colletotrichum lindemuthianum. Of these, strain OS-9 was found to be antagonistic to R. solani, A. solani, F. solani, and C. lindemuthianum while OS-11 was found antagonistic against A. solani only. The growth-promoting benefits of the endophytes were initially evaluated in the glasshouse by inoculated seeds of O. sanctum. Treatment with endophytes OS-10 and OS-11 resulted in significant enhancement of growth as revealed by increase in fresh as well as dry weight. Further, field trials involving two genotypes OS Purple and CIM-Angana were conducted with strains OS-10 and OS-11. The growth-promoting effect was visible on both the genotypes tested as the endophytes significantly enhanced fresh herbage yield (t/ha). Interestingly, these endophytes increased the content of essential oil particularly in cultivar OS Purple and thereby increasing the total oil yields. Molecular characterization of strain OS-11 indicated the strain to be highly related to the type strain of Bacillus subtilis.

Role of Diverse Non-Systemic Fungal Endophytes in Plant Performance and Response to Stress: Progress and Approaches

Plant–fungal symbiotic associations are ubiquitously distributed in natural plant communities. Besides the well-studied mycorrhizal symbiosis and grass systemic clavicipitaceous endophytes, recently, nonsystemic and horizontally transmitted fungal endophytes serving as plant symbionts have been increasingly recognized. Pure culture isolation and culture-independent molecular methods indicate that all parts of healthy plant tissues potentially harbor diverse and previously unknown fungal lineages. Limited evidence also supports a hypothesis that endophytic mycobiota dynamics may have a role in evolution of plants. High variability or “balanced antagonism” can be generally characterized with host–endophyte interactions, which implies that the outcome of symbiotic interactions can fall within a continuum ranging from mutualism to commensalism, and ultimately pathogenicity. Despite this complicated system, admittedly, fungal endophytes really endow the host with an extended phenotype. Accumulating facts illustrate that plant nutrition acquisition, metabolism, and stress tolerance may be strengthened or modulated via fungal symbionts. Piriformospora indica, a member of the order Sebacinales, simultaneously confers host resistance to biotic and abiotic stress. The ecological relevance of other fungal groups, including foliar endophytes, root dark septate endophytes (DSEs), some opportunistic and avirulent microsymbionts (for example, Trichoderma and Fusarium), and even uncultured fungi structurally and physiologically integrated with host tissues, are also being deeply exploited. Production of bioactive metabolites by fungi, overexpression of stress-related enzymes, and induced resistance in hosts upon fungal colonization are responsible for direct or indirect beneficial effects to hosts. More knowledge of endophyte-mediated enhancement of host performance and fitness will offer alternatively valuable strategies for plant cultivation and breeding. Meanwhile, with unprecedented loss of biodiversity, discovery of indigenously novel symbiotic endophytes from natural habitats is urgently needed. In addition, we present some approaches and suggestions for studying host–endophyte interactions.

Properties of bacterial endophytes and their proposed role in plant growth

Bacterial endophytes live inside plants for at least part of their life cycle. Studies of the interaction of endophytes with their host plants and their function within their hosts are important to address the ecological relevance of endophytes. The modulation of ethylene levels in plants by bacterially produced 1-aminocyclopropane-1-carboxylate deaminase is a key trait that enables interference with the physiology of the host plant. Endophytes with this capacity might profit from association with the plant, because colonization is enhanced. In turn, host plants benefit by stress reduction and increased root growth. This mechanism leads to the concept of 'competent' endophytes, defined as endophytes that are equipped with genes important for maintenance of plant-endophyte associations. The ecological role of these endophytes and their relevance for plant growth are discussed here.