The Nuclear Central American Highlands (NCAH) is a mountainous region located within a complex transition zone. Here, we analyzed the distribution patterns of 282 species of resident land birds of the NCAH. We gathered a database with records of presence of species, from which we generated realized ecological niche models using the Genetic Algorithm for Rule Set Production. These ecological niche models were used to obtain maps of each species’ potential distribution and generated species richness maps that were also compared to the map of protected areas. In addition, the maps were overlaid with a 0.25° diameter hexagonal grid to generate a presence–absence matrix to create regionalizations through (a) a Parsimony Analysis of Endemism and (b) a phenogram. Results show contrasting patterns of distribution between total species richness and endemic species richness. The regionalizations show groups influenced by slope and altitude. Species composition is mainly Mesoamerican and Neotropical species. Our results offer a new view of the regional understanding of bird diversity patterns and biogeographical processes that have shaped regional richness, like the effects of the Great American Biotic Interchange that are visible in the species composition of the NCAH. We believe that these maps of both species richness and regionalization can serve as useful tools for conservation biologists and authorities in implementing strategies for the protection of natural areas in the NCAH.
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