Endemic Fish Species Research Articles

Chromosome-Level Genome Assembly and Genetic Maker System of the Endangered Largemouth Bronze Gudgeon (Coreius guichenoti) with Focus on Conservation Applications.

The largemouth bronze gudgeon (Coreius guichenoti), an endemic fish species, is distributed in the upper Yangtze River drainage. Due to anthropogenetic factors such as water pollution, overfishing, and dam construction, the wild populations of C. guichenoti have dramatically declined in recent decades. In this study, we generated a reference chromosomal-level genome assembly of C. guichenoti on the basis of PacBio HiFi sequencing and Hi-C scaffolding technologies. The final genome assembly was 1.10 Gb in length (contig N50: 28.64 Mb; scaffold N50: 42.39 Mb) with 25 chromosomes. The completeness score of the C. guichenoti genome was 96.4%, and high synteny was detected compared with Danio rerio and Ictalurus punctatus genomes. A total of 24325 PCGs were annotated for the C. guichenoti genome. Comparative genomics analysis identified 986 expanded gene families in C. guichenoti, which were significantly enriched in GO items associated with the development and interaction of sperm and egg as well as immunity. Furthermore, positively selected genes (PSGs) detected in C. guichenoti were mainly associated with DNA repair, ATP binding, mitochondrion, and lipid homeostasis. Based on the reference genome and resequencing data, the polymorphic microsatellite (SSR) loci were comprehensively analyzed for C. guichenoti, and the top 15 tetra-nucleotide SSR loci were selected for the construction of the genetic maker system after validation through PCR and genotyping. All of these 15 tetra-nucleotide SSR loci without Hardy-Weinberg equilibrium (HWE) deviation showed high polymorphism, good amplification stability, and selective neutrality. The PID (sibs) curves revealed that the subset of four tetra-nucleotide SSR loci (cgui1, cgui5, cgui3, cgui13) was sufficient for accurate identification of C. guichenoti individuals (PIDsib < 0.01). These 15 tetra-nucleotide SSR loci could also serve as genetic markers in subsequent parentage identification and genetic diversity analysis. The chromosome-level genome assembly and findings laid solid foundations for molecular breeding, genomic research, and biological conservation of C. guichenoti.

Analisis Potensi Pengembangan Produk Makanan Fungsional Berbahan Dasar Ikan Depik (Rasbora Tawarensis) untuk Meningkatkan Kesehatan dan Kesejahteraan Masyarakat

This study aims to identify the potential for developing functional food products based on Depik fish (Rasbora awareness), an endemic fish species in Lake Laut Tawar, Central Aceh, Aceh Province. The urgency of this study is based on the utilization of Depik fish nutrition and the need to manage local food ingredients that have not been optimally utilized. The research method uses a qualitative and quantitative descriptive approach with an online survey of potential consumers. The results of literature studies and interviews conducted with health practitioners show that Depik fish has a protein content of 15-20% and significant omega-3 fatty acids. The survey revealed that consumer knowledge of the nutritional content of Depik fish reached 50-75%. The survey results were based on consumer interest and interest in trying Depik fish products, which reached 60-65%. The resulting time series analysis shows that Depik fish product sales data experienced stable growth of 15% per year from 2018-2022. The development of Depik fish products with various flavors has the potential to reach the consumer market aged 25-45 years who care about health. This product's development offers health benefits and supports utilizing local resources and improving community welfare. The results are used as a baseline for research sustainability, providing a basis for developing compelling products and marketing strategies.

Fishway assessment and monitoring for endemic migratory fish using multiple techniques in high-altitude river systems: A case study from the Yarlung Zangbo River, Southeastern Tibetan Plateau

The Yarlung Zangbo River (YZR) on the Tibetan Plateau is a prime hotspot for hydropower development in China, yet this inevitably poses risks to river connectivity and the survival of its unique endemic fish species. Fishway installations are often adopted to mitigate the impacts on fish, but their effectiveness especially in high-altitude regions remains inadequately studied. Our study offers the first comprehensive evaluation of a fishway installed on a primary tributary of the YZR from 2019 to 2021, using multiple methods including fish sampling, video monitoring, hydroacoustic detection, and passive integrated transponder telemetry technology. The below-dam fish community was dominated by cold-water rheophilic Schizopygopsinae, Schizothoracinae, and Nemacheilidae. Fish movements exhibited distinct seasonal and diel patterns, with activity rising in April and peaking in May. Approximately 75.0 % of fish movements within the fishway were recorded during daytime (7:00–19:00), whereas the fish assemblage near the fishway entrance primarily occurred during nighttime (20:00–6:00). Telemetric trials on five endemic species revealed upstream- and downstream passage efficiencies of 31.0 % and 61.7 %, respectively. Passage efficiency, transit time, and speed varied substantially among species and individuals, primarily affected by environmental factors such as fishway discharge and water temperature. Our findings provide the essential information on fish behavior and movement patterns for designing more effective fishways in plateau regions and underscore the importance of continuous monitoring and evaluation to optimize fishway performance, ensuring that the conservation of endemic fish species is achieved successfully amid expanding hydropower development in the region.

Ecological perspectives of endemic fish species under cascade hydropower development

Wang Y, Wang Q, Zhang W, Wang N, Cong N, Kattel G, Qi Y, Yao W. 2024. Ecological perspectives of endemic fish species under cascade hydropower development. Lake Reserv Manag. XXX–XXX. The upstream Lancang River basin (in Tibet) offers rich hydropower resources together with some of the most delicate freshwater fish species diversity in the world. However, a large dam construction scheme throughout the basin has threatened the fish species diversity and ecology. Our study focuses on the extent to which hydropower construction in the basin influences the river’s ecological status, including the aquatic environment, fish migration, and fish spawning sites. We surveyed the water quality, fish distribution, and fish spawning sites and estimated the fish spawning capacity in the basin. Our results indicate that the water quality prior to dam construction would meet China’s water standards. However, water quality would decline significantly following dam construction, exacerbating the rate of loss of 7 of the protected endemic fish species, as well as threatening the habitat of several other fish species. Our analysis shows a loss trend of fish populations and spawning capacity after damming the river. Cascade dams constructed in the upstream Lancang River basin would obstruct natural migration of fish and inundate their spawning sites, causing reproductive failure and population decline. Based on our analysis, and eco-hydraulic engineering principles, we recommend several ecological protection measures and management options in the upstream Lancang River basin, including the construction of artificial fish ladders, the implementation of ecological regulation, and a fish strategy that will reduce the negative effect of cascade dam constructions.

Field and DNA-barcode based surveys reveal evidence of rare endemic fishes in the Rufiji River Basin

Endemic fish species have long supported the livelihoods of local communities in the Rufiji River Basin (RRB). However, destructive fishing practices have led to a concerning decline in endemic fish stocks. To assess these changes, this study employed key informant interviews, focus group discussions (FGDs), and fishery surveys to assess the historical and contemporary distribution of endemic fishes within the RRB. DNA barcoding was also used to verify species identities. Out of 37 reported fish species, 33 species (54.55% endemic and 45.45% exotic to RRB) were confirmed through DNA barcoding and morphological characteristics. About 5 species including, Heterobranchus longifilis, Citharinus congicus, Labeo congoro, Mormyrus longirostris, and Labeobarbus leleupanus were rarely found in the field, despite being classified as Least Concern by IUCN. Additionally, five species that were reported to be present in the RRB by experienced fishers were not captured during sampling. This highlights the need for validation of the existence of such species through eDNA metabarcoding. Moreover, due to the rarity of some species in the area, their IUCN assessment should be revisited.

Unravelling stress granules in the deep cold: Characterisation of TIA-1 gene sequence in Antarctic fish species

Stress granules (SGs) are cytoplasmic foci lacking membranes, comprising non-translating messenger ribonucleoproteins, translational initiation factors, and additional proteins. Their formation is crucial for rapidly modulating gene expression in response to adverse environmental conditions, such as pollution and infections. Limited research has focused on investigating the molecular components of SGs in fish, with minimal exploration in Antarctic fish. This study characterises for the first time the transcript sequences of one key protein component of SGs, TIA-1 (T-cell intracellular antigen 1), in two Antarctic endemic fish species, i.e. Trematomus bernacchii and Chionodraco hamatus. The mRNA-binding protein TIA-1 acts as a post-transcriptional regulator of gene expression and its aggregation leads to the formation of SGs in response to cellular damage. The in vitro and bioinformatic analyses of the TIA-1 gene sequences of these two species highlighted interesting peculiarities, which include the transcription of alternatively spliced isoforms unique to the notothenioid lineage, potentially unlocking further insights into their unique adaptations to extreme environmental conditions. This is the first study to analyze tia-1 expression levels in different tissues of Antarctic fish species. Our key findings indicate that the TIA-1 gene is expressed at particularly high levels in the liver and spleen of C. hamatus, as well as in the heart and skeletal muscle of T. bernacchii. This suggests that those tissues play a significant role in the stress response mechanisms of the studied species. This study provides novel insights into the molecular adaptations of Antarctic fish, highlighting the potential importance of TIA-1 in their response to environmental stressors. The unique features of TIA-1 identified in these species may offer broader implications for understanding how Antarctic fish regulate gene transcriptions in their extreme environments.

Multi-method survey rediscovers critically endangered species and strengthens Madagascar's freshwater fish conservation

Freshwater ecosystems are crucial for global biodiversity through supporting plant and animal species and providing essential resources. These ecosystems are under significant threat, particularly in island environments such as Madagascar. Our study focuses on the Amboaboa River basin, home to the rare and endemic fish species Rheocles derhami, last recorded in 2013. To assess the status of this and other threatened fish species including Ptychochromis insolitus and Paretroplus gymnopreopercularis, and to understand freshwater fish population dynamics in this biodiversity hotspot, we conducted a comprehensive survey using both environmental DNA (eDNA) and traditional fishing methods. While traditional methods effectively captured a diverse range of species, including several invasive aliens and the critically endangered endemic species that were the focus of this study, the eDNA approach detected only a fraction of these introduced species and struggled to identify some critically endangered endemics at the species level. This highlights the value of combining methods to enhance species detection. We also investigated the trade-offs associated with multi-primer assessments in eDNA analysis, focusing on three different primer combinations targeting the 12S mitochondrial gene: MiFish, Tele02, and Riaz. Additionally, we provided 12S reference barcodes for 10 species across 9 genera of fishes from the region to increase the coverage of the public reference databases. Overall, our study elucidates the current state of freshwater biodiversity in the Amboaboa River basin and underscores the value of employing multiple methods for effective conservation strategies.

Effect of Stocking Density on the Growth of the Endangered Amazonian Fish Hypancistrus zebra (Siluriformes: Loricariidae)

ABSTRACTStocking density has a significant influence on animal homeostasis, and so is a crucial factor in the management of organisms in captivity and an important role in ex situ conservation of endangered species. Hypancistrus zebra is an endemic fish species from the Xingu River, Brazil—considered Critically Endangered since the early 2000s due to fishing pressure and, more recently, due to habitat changes resulting from the construction of the Belo Monte Hydroelectric Dam. The implementation of appropriate management in captivity is of utmost importance for its conservation, particularly in enhancing ex situ breeding techniques. This study aimed to evaluate the growth of juvenile H. zebra in aquaria with three different stocking density levels. The juveniles were distributed between three treatments, each with three replicates. We found no correlation between biomass and aquarium volume. The highest correlation coefficients were found between growth rates and densities related to the number of individuals per shelter area. Mortality rate was directly related to the initial number of fish in the aquariums, with larger populations showing higher mortality rates. The treatment with lower stocking density displayed the highest growth rate, while the treatment with higher density had the lowest growth rate, with a 23.38% difference between them.

Individual dietary specialization and intraspecific morphological divergence of an endemic fish species: the case of Glanidium ribeiroi in the Iguassu ecoregion

ABSTRACT Because of the importance of information about endemic species and global biodiversity ecoregion, we tested the hypothesis that individuals of Glanidium ribeiroi (endemic species in the Iguassu ecoregion) are specialists and that this specialization decreases with increasing body size, especially concerning the size of the mouth and head, which can be limiting for the quantity and size of prey consumed by smaller individuals. Fish sampling was conducted monthly using gill nets and longlines from 2013 to 2016 in the main channel of the Iguaçu River and two tributaries. We observed the consumption of aquatic insects by smaller individuals and seeds, unidentified fish, and Decapoda by larger individuals. Individual dietary specialization was high and related to head width. The morphological traits of smaller-sized individuals were related to displacement and movement (larger peduncle), and the larger-sized individuals were related to high performance in the exploitation and prey acquisition (larger head and mouth, dorsal eyes, longer intestines). Our results highlight the importance of assessing individual variations within a population, favoring an understanding of population dynamics. In addition, morphological differences may imply differences in the use of habitat and food resources between individuals of larger and smaller body sizes and influence individual specialization.

Longitudinal distribution of fish fauna and characteristics of indicator species in the East Seto Inland Ecological Region within the Japanese Archipelago

Understanding biota distribution patterns is essential for ecosystem conservation and restoration. In addition to biogeography, the distribution patterns of aquatic organisms that inhabit rivers vary longitudinally along river networks. Although longitudinal changes in distribution patterns in aquatic organisms along river networks have been studied in single river basins, it is crucial to understand these patterns at a regional ecological scale for broad-scale ecosystem conservation. This study aimed to elucidate the longitudinal distribution patterns of fish fauna and their correlation with environmental factors in several watersheds within the East Setouchi Ecological Region, renowned for its rich freshwater fish diversity in the Japanese archipelago. Data were obtained for 118 species across 10 watersheds and 85 sites, and the surveyed sites were classified into four longitudinal groups based on the similarity of the fish fauna. The lowest group comprised river estuaries, abundant in brackish-water fish, comprising primarily Gobiidae species. In lower watershed areas with low agricultural land and forest cover but high urbanization, all fish species selected as indicators were non-native. Upstream areas with a high percentage of agricultural land featured a mix of native Cyprinidae and non-native species such as Micropterus salmoides and Rhodeus ocellatus ocellatus. The most upstream groups, marked by significantly greater elevations and bed slopes, exclusively comprised native species as indicator species. Analyzing the longitudinal distribution patterns of fish fauna at multiple sites within the same ecological region enabled us to choose endemic fish species as indicators and identify important species for conservation. Additionally, the selection of sites characterized by significant urbanization and strong anthropogenic influences, along with the selection of non-native species as indicators, underscores the urgency of conserving native organisms in these areas, calling for continuous monitoring.

Assessing the Impacts of Changing Connectivity of Hydropower Dams on the Distribution of Fish Species in the 3S Rivers, a Tributary of the Lower Mekong

Hydropower plants (HPPs) create barriers across rivers and fragment aquatic ecosystems, river reaches and habitats. The reservoirs they create slow the flowing water and convert the riverine into lacustrine ecosystems. The barriers created by HPPs interrupt the seasonal migrations of many fish species, while the reservoirs drive away fish species that are dependent on flowing water habitats. This paper assesses the distribution of fish species in the 3S rivers—Sekong, Sesan and Sre Pok, in Cambodia, Laos and Viet Nam—using IUCN Red List-assessed species distribution by HydroBasin Level 8 from the freshwater reports of the Integrated Biodiversity Assessment Tool (IBAT) and their connectivity with the Mekong. There are currently 61 commissioned dams in the 3S basins and a further 2 under construction, 23 of which are larger than the 30 MW installed capacity. A further 24 HPPs are proposed or planned in these basins. The changes in connectivity caused by the dams are measured by adapting the River Class Connectivity Index (RCICLASS); the original connectivity of the 3S basin taking into account the two major waterfalls in the Sesan and Sre Pok rivers was estimated at 80.9%. With existing dams, the connectivity has been reduced to 23.5%, and with all planned dams, it is reduced further to 10.9%. The resulting re-distribution of fish species occurring throughout the 3S basins is explored, by focusing on migratory guilds and threatened and endemic fish species. With all dams built, it is predicted that the total numbers of species in HydroBasins above the dams will be reduced by 40–50%. The Threatened Species Index is estimated to fall from over 30 near the confluence of the three rivers to less than 10 above the lowest dams on the 3S rivers. The analysis demonstrates how widely available global and regional datasets can be used to assess the impacts of dams on fish biodiversity in this region.

Exploring invasiveness and versatility of used microhabitats of the globally invasive Gambusia holbrooki

Non-native species can lead to severe impacts on invaded ecosystems, including the decline of ecosystem function through deleterious impacts on species diversity. The successful establishment of non-native species in new environments is the first barrier a species must overcome, ultimately depending on its ability to either cope with or adapt to local site-specific conditions. Despite the widespread distribution and ecological consequences of many freshwater invaders, site-specific and climatic preferences are often unknown. This is also the case of the Eastern mosquitofish Gambusia holbrooki, a global invader considered as a pervasive threat to endemic species. Here, we determined the ecological features and preferred site-specific conditions of G. holbrooki in Türkiye, which spans a wide range of diverse biogeographically distinct ecosystems by surveying populations from 130 localities in 2016 and 2017. Gambusia holbrooki were detected by hand-net in 48 of these sites (19 lotic, 29 lentic). It showed a preference for shallow waters with medium sized rocks, and abundances differed spatially across a latitudinal gradient and was influenced predominantly by variations in pH. The only other factors predicting its presence were low current velocities and gravel substrate, highlighting its ecological versatility in utilising a wide range of microhabitats. Bioclimatic models suggest that G. holbrooki is found in areas with a wide average annual temperature ranging from 10 to 20 °C, but with temperature not being a limiting factor to its invasion. Gambusia holbrooki shows a preference for xeric freshwater ecosystems and endorheic basins, as well as temperate coastal rivers, temperate upland rivers, temperate floodplain rivers and wetlands, and tropical and subtropical coastal rivers. These results, particularly the wide occurrence with only few limiting factors, emphasise the invasion potential of mosquitofish and should substantiate the need for localised invasive species management and conservation efforts, particularly in smaller or insular areas where mosquitofish and endemic fish species co-exist.

Ten years later: An update on the status of collections of endemic Gulf of Mexico fishes put at risk by the 2010 Oil Spill.

The 2010 Gulf of Mexico Deepwater Horizon was the largest oil spill in human history that occurred during a 12-week period in a region less than 100 km from the coast of Louisiana; however, after more than a decade of post-spill research, few definitives can be said to be known about the long-term impacts on the development and distribution of fishes in and around the region of the disaster. Here, we examine endemic Gulf of Mexico fish species that may have been most impacted by noting their past distributions in the region of the spill and examining data of known collecting events and observations over the last twenty years (ten years prior to the spill, ten years post-spill). Five years post-spill, it was reported that 48 of the Gulf's endemic fish species had not been collected and, with expanded methods, we now report that 29 (of the 78 endemic species) have not been reported in collections since 2010 (five of these are only known from observations post-spill). Although the good news that some previously 'missing' species have been found may be cause to celebrate, the lack of information for many species remains a cause for concern given focused sampling efforts post-spill.

Testing alternative hypotheses for the decline of cichlid fish in Lake Victoria using fish tooth time series from sediment cores.

Lake Victoria is well known for its high diversity of endemic fish species and provides livelihoods for millions of people. The lake garnered widespread attention during the twentieth century as major environmental and ecological changes modified the fish community with the extinction of approximately 40% of endemic cichlid species by the 1980s. Suggested causal factors include anthropogenic eutrophication, fishing, and introduced non-native species but their relative importance remains unresolved, partly because monitoring data started in the 1970s when changes were already underway. Here, for the first time, we reconstruct two time series, covering the last approximately 200 years, of fish assemblage using fish teeth preserved in lake sediments. Two sediment cores from the Mwanza Gulf of Lake Victoria, were subsampled continuously at an intra-decadal resolution, and teeth were identified to major taxa: Cyprinoidea, Haplochromini, Mochokidae and Oreochromini. None of the fossils could be confidently assigned to non-native Nile perch. Our data show significant decreases in haplochromine and oreochromine cichlid fish abundances that began long before the arrival of Nile perch. Cyprinoids, on the other hand, have generally been increasing. Our study is the first to reconstruct a time series of any fish assemblage in Lake Victoria extending deeper back in time than the past 50 years, helping shed light on the processes underlying Lake Victoria's biodiversity loss.

The Contribution of the Biota Diversity of Lake Toba to Indonesia's Biota Wealth

This study aims to analyze the contribution of the diversity of biota in the waters of Toba Lake to the richness of Indonesia's biota. Research is needed to analyze the diversity of Lake Toba water biota. In order to achieve this goal, data and information collected regarding the contribution of the diversity of Lake Toba waters to the richness of Indonesia's biota is used. Verification of the data and information obtained was carried out through literature study, document analysis, interviews and filling out questionnaires. The results showed that in the waters of the lake there are endemic fish species whose existence is currently almost extinct, namely Batak fish or "ihan" (Neolissochillus thienemanni) consisting of two species, namely: Lissochilus sumatranus and Labeobarbus soro. There are various types of aquatic plants such as various types of algae and water hyacinth. Apart from that, there are also various species of molluscs such as freshwater snails and clams as well as other aquatic animals such as frogs and eels. The aquatic biota of Lake Toba has an important role in maintaining the balance of the ecosystem and providing resources for the people around the lake and contributing to Indonesia's Biota Wealth.

Halichoeres sanchezi n. sp., a new wrasse from the Revillagigedo Archipelago of Mexico, tropical eastern Pacific Ocean (Teleostei: Labridae).

A new labrid fish species, Halichoeres sanchezi n. sp., is described from eight specimens collected in the Revillagigedo Archipelago in the tropical eastern Pacific Ocean, off the coast of Mexico. The new species belongs to the Halichoeres melanotis species complex that is found throughout the region, differing by 2.4% in the mtDNA cytochrome c oxidase I sequence from its nearest relative, H. melanotis from Panama, and 2.9% from Halichoeres salmofasciatus from Cocos Island, off Costa Rica. The complex is distinguished from others in the region by having a black spot on the opercular flap and a prominent black area on the caudal fin of males. The juveniles and initial phase of the new species closely resemble those of H. salmofasciatus and Halichoeres malpelo from Malpelo Island of Colombia, differing in having an oblong black spot with a yellow dorsal margin on the mid-dorsal fin of initial-phase adults as well as on juveniles. In contrast, the terminal-phase male color pattern is distinct from other relatives, being vermilion to orangish brown with dark scale outlines, a white patch on the upper abdomen, and a prominent black band covering the posterior caudal peduncle and base of the caudal fin. The new species adds to the list of endemic fish species for the isolated archipelago and is an interesting case of island endemism in the region. The discovery was made during the joint 2022 collecting expedition to the archipelago, which featured a pioneering collaborative approach to an inventory of an island ichthyofauna, specifically including expert underwater photographers systematically documenting specimens in situ, before hand-collection, and then photographed fresh, tissue-sampled, and subsequently vouchered in museum collections.

Morphology and motor behavior of endemic fishes in the upper reaches of the Yangtze River basin.

Dam construction alters the hydrodynamic conditions, consequently impacting the swimming behavior of fish. To explore the effect of flow hydrodynamics on fish swimming behavior, five endemic fish species in the upper Yangtze River basin were selected. Through high-speed video visualization and computer analysis, these species' swimming patterns under different flow velocities (0.1-1.2 m/s) were investigated. The kinematic and morphological characteristics of the fish were presented. The principal component analysis was used to analyse the main factors influencing the swimming ability of fish and to determine the correlation coefficients among fish behavior indicators. Fish exhibited three different swimming patterns under different flow velocities. Low velocity (0.1-0.3 m/s) corresponds to free motion, middle velocity (0.4-0.7 m/s) corresponds to cruising motion, and high velocity corresponds to stress motion (0.8-1.2 m/s). The fish kinematic index curves were obtained, and four of five fish species showed two extreme points, which means the optimal and adverse swimming strategies can be determined. With the increase in flow velocity, the tail-beat frequency showed an increasing trend, whereas the tail-beat angle and amplitude showed a decreasing trend. Morphological and kinematic parameters were the two main indexes that affect the swimming ability of fish, which accounts for 41.9% and 26.9%, respectively.

The complete mitochondrial genome of Gobio huanghensis (Cypriniformes: Cyprinidae) in the Yellow River, China

Gobio huanghensis, a member of the eponymous genus within the Cyprinidae, family of the Cypriniformes order, is an endemic fish species found exclusively in the upper reaches of the Yellow River, spanning from Yinchuan to Lanzhou. This study presents the first comprehensive report of the complete mitochondrial genome sequence of G. huanghensis, encompassing 16,604 base pairs (bp) with a nucleotide composition of 26.3% cytosine (C), 17.6% guanine (G), 29.4% adenine (A), and 26.7% thymine (T). In congruence with other species in the Gobio genus, its mitochondrial genome comprises 37 genes, including two ribosomal RNA genes, 13 protein-coding genes (PCGs), and 22 transfer RNA genes. Notably, COX1 initiates with the start codon GTG, distinct from the typical ATG start codon of other PCGs. The mitogenome exhibits four types of stop codons: TAA, TAG, TA-, and T--. Phylogenetic analyses, grounded in complete mitochondrial sequences, position G. huanghensis at the forefront of one of two major clusters within the genus Gobio, corroborating existing morphological classifications. These findings offer valuable theoretical insights for the taxonomic classification, conservation, and population genetics of G. huanghensis.

Astyanax caucanus: microsatellite loci development and population genetics in the Cauca River, Colombia

Astyanax caucanus is an endemic fish species to the Magdalena-Cauca basin in Colombia. It is considered a Least Concern species by the International Union for Conservation of Nature, and currently, it is not a fishery resource. Its fertilized eggs may drift up to 4–5 days before hatching and can be carried up to 340 km given the water velocity of the river. Although A. caucanus is listed as short -migratory species (< 50 km), this study hypothesized that it exhibits gene flow along the middle and lower section of the Cauca River due to the great potential for larval dispersal. To test this hypothesis, we developed a set of species-specific microsatellite primers suitable for population genetic studies. Genetic structure analyses with 193 samples evidenced two genetic stocks that coexist, comigrate, and exhibit gene flow along the study area. Both stocks show high genetic diversity indices (Na and HE) and effective population sizes (Ne > 1000), but also show evidence of bottlenecked populations and high values of the inbreeding coefficient (FIS). Finally, these results are useful to understand the effects of other anthropic activities, besides fishing pressure on population bottlenecks found for other fish species cohabiting the area.

Arapaima gigas stocks have declined drastically in the lower Tocantins River in the Amazon Microregion.

Arapaima gigas, an emblematic species of the Amazon region and a longstanding primary fishing resource, currently holds a "Data Deficient" status on the International Union for Conservation of Nature Red List, and is listed as an endangered species in Brazil. The Tocantins River is the most extensively modified large tributary of the Amazon Basin, and thus can affect the dynamics of ichthyofaunal populations. Over a period of 1 year, representatives of the fishing communities and fishermen from 25 fishing communities from four municipalities in the lower Tocantins River region were interviewed, and the obtained information was evaluated based on the literature to survey the population abundance status of A. gigas in the region and its impact on local communities. Among the fishermen interviewed, only one reported still encountering and fishing A. gigas on Jaracuera Island. The disappearance of A. gigas in the region are viewed as having economically disastrous consequences for the residents. Additionally, other endemic fish species are no longer observed in this locality either. If fishery management officials do not work together with local communities, A. gigas could disappear from the northern region of Brazil, where information on the dynamics of A. gigas fishing is lacking.