Guamuchil tree is native of México and its fruits, which belong to Leguminosae family, contain seeds that are wasted. In this work, the physicochemical, functional and structural characterization of a defatted flour obtained from guamuchil seeds (DGuSF) was carried out. DGuSF had a low moisture (5.44 %) and lipid (2.91 %) contents and high protein (33.18 %) and carbohydrate (55.54 %) contents. Functional properties were highly dependence of pH, showing the highest values of 4.71 g H2O/g, 50 %, 84 %, 56 %, and 79 % for water binding capacity (WBCa), emulsifying capacity (EmA), emulsifying stability (EmS), foaming capacity (FoC), and foaming stability (FoS), respectively, at a value of 10. In the case of least gelling concentration (LGCo) the better value of 8 % was at pH 4, being obtained at this same condition the highest apparent viscosity (ηa) of 290.8 Pa·s. Values of 72.3 % and 40.5 % for in vitro protein enzymatic digestibility (IVPED) and in vitro antioxidant activity (IVVA), respectively, were also obtained for DGuSF, while their protein fractions presented molecular masses in the scale of ∼13–150 kDa. According to these results, guamuchil seeds could represent an alternative for the elaboration of DGuSF, to be applied as a food constituent because of its good compositional and functional characteristics.