While most mammals decrease energy expenditure while fasting, marine mammals such as northern elephant seals fast for several months while undergoing energy-intensive life history stages (e.g., postnatal development, molting, reproduction). Energy for these functions is provided by mobilization of large energy stores in blubber, which is driven by elevation of stress hormone levels across the fast. We used a proteome approach to examine potential mechanisms regulating fasting metabolism and responses to experimental stress challenges in elephant seals. We compared five proteome datasets and identified proteins that were altered by both fasting and experimental stress challenges across multiple life history stages and tissues in seals. These included lipid and hormone transport proteins (e.g., apolipoproteins, corticosteroid-binding globulin, transthyretin), acute phase proteins (e.g., alpha-2-macroglobulin, haptoglobin), antioxidant enzymes (e.g., glutathione peroxidase 3, catalase), adipokines (e.g., mimecan), and metabolic enzymes (e.g., fatty acid synthase, long chain fatty acid CoA ligase), among others. We suggest that these proteins may function as part of a core adaptive responses to physiological challenges in marine mammals. However, our ability to identify components of these responses has been hindered by several practical and technical challenges, and we will discuss the limitations and considerations for using a proteome approach in comparative physiology studies based on our experience. This research was funded by University of the Pacific and Offce of Naval Research. This is the full abstract presented at the American Physiology Summit 2024 meeting and is only available in HTML format. There are no additional versions or additional content available for this abstract. Physiology was not involved in the peer review process.