Cycling Of Elements Research Articles

Advances in Research of the Effects and Mechanisms of Polyethylene Microplastics on Soil Nitrogen Transformation

In the agricultural lands of China, polyethylene is the main component of microplastics （MPs）, with characteristics such as small size, wide distribution, easy accumulation, and difficult degradation. Therefore, it may have an impact on the elemental cycling process of the soil. On the basis of reviewing the key literatures in the past few years, this study systematically analyzed and summarized the key factors and processes of the polyethylene microplastics （PE-MPs） affecting soil nitrogen transformation. On the one hand, PE-MPs directly affected the activities of microorganisms and key enzymes related to soil nitrogen transformation by enriching microorganisms, selecting colonized microbial populations, and releasing additives. On the other hand, PE-MPs had indirect impacts on the activities of microorganisms and key enzymes related to soil nitrogen transformation by affecting soil physicochemical properties of soil and changing the microenvironment for microbial growth. Moreover, phthalates, an important additive of the MPs, may be the key factor affecting soil nitrogen transformation in the short-term. Finally, we posed key scientific issues that should be further studied in order to provide scientific support for nitrogen nutrition regulation and ecological risk assessment of soils contaminated by PE-MPs.

Plants Restoration Drives the Gobi Soil Microbial Diversity for Improving Soil Quality.

Desertification and salt stress are major causes of terrestrial ecosystem loss worldwide, and the Gobi, representing a salt-stressed area in inland China, has a major impact on the ecosystems and biodiversity of its surrounding environment. The restoration of the Gobi Desert is an important way to control its expansion, but there are few studies on the evaluation of restoration. In this study, soils under different restoration scenarios, namely, soils in restored areas (R1, R2), semi-restored areas (SR1, SR2), and unrestored control areas (C1, C2), were used to investigate differences in microbial diversity and physicochemical properties. The results showed that the soil was mainly dominated by particles of 4-63 μm (26.45-37.94%) and >63 μm (57.95-72.87%). Across the different restoration levels, the soil pH (7.96-8.43) remained basically unchanged, salinity decreased from 9.23-2.26 to 0.24-0.25, and water content remained constant (10.98-12.27%) except for one restored sample in which it was higher (22.32%). The effective Al, Cu, and Zn in the soil increased, but only slightly. Total organic matter (TOM) decreased from 3.86-5.20% to 1.31-1.47%, and total organic nitrogen (TON) decreased from 0.03-0.06% to 0.01-0.02%, but the difference in total organic carbon (TOC) was not significant. High-throughput testing revealed that the bacterial population of the restored area was dominated by A4b (6.33-9.18%), MND1 (4.94-7.39%), and Vicinamibacteraceae (7.04-7.39%). Regarding archaea, samples from the restored areas were dominated by Marine Group II (76.17-81.49%) and Candidatus Nitrososphaera (6.07-9.75%). PCoA showed that the different restoration levels were the main cause of the differences between the samples. Additionally, salinity was the dominant factor that induced this difference, but it was inhibited by the restoration and targeted enrichment of some of these functional genera. Desert restoration should therefore focus on conserving water rather than adding nutrients. Planting salt- and drought-tolerant vegetation will contribute to the initial restoration of the desert and the restoration of the microbiological content of the soil as it migrates over time, creating a cycle of elements. Restoration stimulates and enhances the microbial diversity of the soil via beneficial microorganisms.

Directional long-distance electron transfer from reduced to oxidized zones in the subsurface

Electron transfer (ET) is the fundamental redox process of life and element cycling. The ET distance is normally as short as nanometers or micrometers in the subsurface. However, the redox gradient in the subsurface is as long as centimeters or even meters. This gap triggers an intriguing question whether directional long-distance ET from reduced to oxidized zones exists along the redox gradient. By using electron-donating capacity variation as a proxy of ET, we show that ET can last over 10 cm along the redox gradient in sediment columns, through a directional long-distance ET chain from reduced to oxidized zones constituted by a series of short-distance electron hopping reactions. Microbial and chemical processes synergistically mediate the long-distance ET chain, with an estimated flux of 6.73 μmol e−/cm2 per day. This directional long-distance ET represents an overlooked but important “remote” source of electrons for local biogeochemical and environmental processes.

How tree species have modified the potentially toxic elements distributed in the developed soil–plant system in a post-fire site in highly industrialized region

The biogeochemical cycles of trace elements are changed by fire as a result of the mineralization of organic matter. Monitoring the accumulation of trace elements in both the environment and the tree biomass during the post-fire (PF) forest ecosystem regeneration process is important for tree species selection for reforestation in ecosystems under anthropogenic pressure. We analyzed the soil concentrations of different groups of potentially toxic elements (PTEs), including beneficial (Al), toxic (Cd, Cr, Pb), and microelements (Cu, Mn, Ni, Zn), and their bioaccumulation in the tree species (Pinus sylvestris, Betula pendula, Alnus glutinosa) biomass introduced after a fire in a forest weakened by long-term emissions of industrial pollutants. The results indicated no direct threat from the PTEs tested at the PF site. The tree species introduced 30 years ago may have modified the biogeochemical cycles of the PTEs through different strategies of bioaccumulation in the belowground and aboveground biomass. Alder had relatively high Al concentrations in the roots and a low translocation factor (TF). Pine and birch had lower Al concentrations in the roots and higher TFs. Foliage concentrations and the TF of Cd increased from alder to pine to birch. However, the highest concentration and bioaccumulation factor of Cd was found in the alder roots. The concentrations of Cr in the foliage and the Cr TFs in the studied species increased from pine to birch to alder. Higher concentrations of Cu and Ni were found in the foliage of birch and alder than of pine. Among the species, birch also had the highest Pb and Zn concentrations in the roots and foliage. We found that different tree species had different patterns of PTE phytostabilization and ways they incorporated these elements into the biological cycle, and these patterns were not dependent on fire disturbance. This suggests that similar patterns might also occur in more polluted soils. Therefore, species-dependent bioaccumulation patterns could also be used to design phytostabilization and remediation treatments for polluted sites under industrial pressure.

Rhizaria in the oligotrophic ocean exhibit clear temporal and vertical variability

Recently studies have shown that Rhizaria, a super-group of marine protists, have a large role in pelagic ecosystems. They are unique in that they construct mineral tests out of silica, calcium carbonate, or strontium sulfate. As a consequence, Rhizaria can have large impacts on the ocean’s cycling of carbon and other elements. However, less is known about Rhizaria ecology or their role in the pelagic food-web. Some taxa, like certain Radiolarians, are mixotrophic, hosting algal symbionts. While other taxa are flux-feeders or even predatory carnivores. Some prior research has suggested that Rhizaria will partition vertically in the water column, likely due to different trophic strategies. However, very few studies have investigated their populations over extended periods of time. In this study, we present data investigating Rhizaria abundance and vertical distribution from over a year of monthly cruises in the Sargasso Sea. This study represents the first quantification of Rhizaria throughout the mesopelagic zone in an oligotrophic system for an extended period of time. We use this data to investigate the hypothesis that Rhizaria taxonomic groups will partition due to trophic mode. We also investigate how their abundance varies in accordance with environmental parameters. Rhizaria abundance was quantified using an Underwater Vision Profiler (UVP5), an in-situ imaging device. Ultimately, we show that different Rhizaria taxa will have unique vertical distribution patterns. Models relating their abundance to environmental parameters have mixed results, yet particle concentration is a common predictive variable, supporting the importance of heterotrophy amongst many taxa.

A protocol for the synthesis of [35S]-labeled 3-dimethylsulfoniopropionate and dimethylsulfide from L-methionine for use in biogeochemical studies

Radiotracers are highly sensitive tools for quantifying the rates of important biogeochemical processes and the fates of specific atoms and/or compounds within major global elemental cycles, especially those that are requisite for life. Important radiolabeled organosulfur compounds, like dimethylsulfide (DMS) and its precursor 3-dimethylsulfoniopropionate (DMSP), are not commercially available, but their well-documented use has been key in furthering our understanding of the marine sulfur cycle. [35S]-DMSP obtained by chemical synthesis has been used extensively in radiotracer studies involving DMS and DMSP, but its synthesis has been restricted to 2 research groups. Presented here is a protocol for the chemical synthesis of [35S]-DMSP from [35S]-L-methionine, though the method could be used for other radiolabels (e.g. [14C], [3H]). The synthesis consists of 2 reaction steps, (1) the sequential oxidative deamination and decarboxylation of [35S]-L-methionine to [35S]-3-methylmercaptopropionate and (2) the methylation of [35S]-methylmercaptopropionate to yield the product [35S]-DMSP. The product is purified by liquid chromatography and two cation-resin exchanges. Average final [35S]-DMSP yield was 5.34% (n = 16; range: 1.26% to 14.84%, excluding failures), although updated instrumentation could likely improve final yields. The objective of this work is to standardize the synthesis of [35S]-DMSP to widen its availability and use among the community and hence facilitate increased understanding of the reduced sulfur and carbon cycles.

Fe(III)-mediated changes in microalgae-associated bacterial communities and dissolved organic matter characteristics: A case study for Chlorococcum sp. GD

Trivalent iron ions (Fe(III)) have important effects on aquatic ecosystems, especially on the functional diversity and stability of microorganisms and ecosystems. Here, a cultivable microalgae (Chlorococcum sp. GD) from the natural environment (Shanxi, China) were isolated and identified. A combined high-throughput 16S rRNA gene amplicon sequencing/excitation-emission matrix coupled with parallel factor (EEM-PARAFAC) analysis was used to integrated the results of Fe(III) influence on Chlorococcum sp. GD bacterial community and dissolved organic matter (DOM) characteristics through laboratory experiments. Due to the addition of Fe(III) in the form of ferric nitrate (Fe(NO3)3·9H2O), complexed with EDTA to maintain solubility and bioavailability, the bacterial community was altered. This led to a decrease in the relative abundance of Proteobacteria and Actinobacteria and an increase in the relative abundance of Cyanobacteria, especially under excessive Fe(III) treatment. In addition, the relative contribution of bacterial community dispersal limitation and homogenizing dispersal was 100 %, which may lead to differences in their local adaptation and ecological processes with homogenization of bacterial diversity and loss of function. Excessive Fe(III) caused a significant increase in the abundance of genes involved in the carbon cycle (p < 0.01) and a significant decrease in genes involved in the nitrogen cycle (p < 0.01), further affecting the overall regulatory network of gene expression. This led to an increase in the abundance of genes involved in metabolism, cellular processes, environmental information processing, genetic information processing, and human diseases. The moderate amount of Fe(III) promoted the production of microbial components and accelerated the degree of DOM humification. It is also worth mentioning that excessive Fe(III) inhibited DOM degradation. Overall, this work explored the characteristics of bacterial community and DOM changes in Fe(III)-stressed Chlorococcum sp. GD as an example, which contributes to an in-depth understanding of microbial community diversity and element cycling in aquatic ecosystems.

Stability and transformation of jarosite and Al-substituted jarosite in an acid sulfate paddy soil under laboratory and field conditions

Jarosite, a prominent mineral in oxidised acid sulfate soil, is known to sorb and incorporate a variety of elements, including Al. However, to understand the role that jarosite plays in regulating element cycles, it is crucial to understand the stability and transformation pathways of jarosite in an acid sulfate soil under dynamic biogeochemical conditions. In this study, we observed the transformation of unsubstituted jarosite and Al-substituted jarosite, collectively referred to as ‘jarosite’, in an acid-sulfate rice paddy topsoil and subsoil from Thailand. Jarosite was incubated in flooded paddy topsoils and subsoils for up to sixteen weeks, both in laboratory mesocosms and in the field, using bags made of polyethylene terephthalate mesh. One set of mesh bags contained jarosite that was not mixed with any other minerals, and referred to as ‘pure mineral’ incubations. Mineral transformations occurred under the influence of the soil porewater only and were primarily followed by X-ray diffraction analysis. A parallel set of mesh bags contained soil with 57Fe-labelled jarosite enrichment (Fe enriched in soil by a factor of 1.3 but 57Fe enrichment factor of 12.5–13.6), which allowed jarosite transformation to occur in close association with the soil matrix. Mineral transformations in 57Fe-jarosite-enriched soil were followed using 57Fe Mössbauer spectroscopy. In laboratory mesocosms and in the field, jarosite transformed most quickly in topsoil, whereas jarosite underwent limited transformation in subsoils, especially in laboratory mesocosms where Fe reduction was slow. The chemical environment around the jarosite affected the outcome of the transformation processes. Crystalline Fe oxyhydroxides, such as goethite, dominated the products in mesh bags where jarosite was not mixed with soil, whereas short-range-ordered or non-mineral Fe phases, such as Fe(II) sorbed to mineral surfaces or complexed with organic ligands, were dominant transformation products of jarosite when mixed in soil. Furthermore, Al substitution in jarosite caused contrasting effects in mesh bags containing pure minerals or mineral-enriched soil. Aluminium substitution slowed the transformation of jarosite in pure mineral mesh bags, but Al-substituted and unsubstituted jarosite showed similar transformation rates and pathways when incubated as a mixture with soil. The contrasting rate of transformation in topsoil and subsoil, the contrasting products of transformation in pure mineral mesh bags and 57Fe-jarosite-enriched soil, and the contrasting effect of Al substitution in pure mesh bags or jarosite-enriched soil, all demonstrate that the rate and products of jarosite transformation are defined by a balance between competitive transformation pathways that affect the transforming minerals.

Effects of deep magmatic degassing and shallow seawater circulation on trace element and sulfur cycling in submarine hydrothermal systems: Insights from the Shijuligou analog, North China

Limited access to modern subseafloor sulfides hampers our understanding of the link between magmatic volatile influx and the cycling of trace elements and sulfur, as well as the effect of the subsequent shallow seawater circulation on these processes. Hence, we studied a well-preserved fossil analog of submarine hydrothermal systems – the Shijuligou volcanogenic massive sulfide (VMS) deposit from the North Qilian Mountains in North China to examine variations in elements and isotopes of subseafloor sulfides vertically.The vertical distribution of trace elements in subseafloor sulfides is strongly controlled by temperature gradients and redox states during the interaction between hot fluids and seawater beneath the paleo-seafloor. While the enrichment of elements like As, Sb, and Au (median: 1335, 43.7, and 0.30 ppm, respectively, n = 21) and negative δ34S values (mean: −3.07 ‰, n = 7) of euhedral pyrites in the jasper, along with the precipitation of high sulfidation minerals (e.g., enargite), suggest the input of magmatic volatiles into hydrothermal systems. During the shallow seawater-hydrothermal circulation, pyrites in the veined and stockwork zones exhibit distinctly elevated δ34S values (up to 15.74 ‰), accompanied by increased concentrations of wall-rock-derived elements (e.g., Cu, Ni, Si, and Ti) and low-temperature-responsive elements (e.g., Pb, Zn, and Cd). Sulfur isotopes of sulfides vary significantly from the surface to the deep ore zones, ranging from −3.36 to 19.84 ‰ (mean: 9.25 ‰, n = 37). The negative δ34S values of pyrites at the paleo-seafloor are due to the addition of H2S derived from the disproportionation of magmatic SO2. The increased δ34S values of stockwork and disseminated sulfides at depth are attributed to the progressive reduction of seawater sulfates by ferrous iron released from the alteration of fresh basalts. The trace elemental and isotopic characteristics of sulfides suggest the Shujuligou VMS deposit resembles the fossil analog of immature, subduction-related submarine hydrothermal systems.

SMMP: A Deep-Coverage Marine Metaproteome Method for Microbial Community Analysis throughout the Water Column Using 1 L of Seawater.

Marine microbes drive pivotal transformations in planetary-scale elemental cycles and have crucial impacts on global biogeochemical processes. Metaproteomics is a powerful tool for assessing the metabolic diversity and function of marine microbes. However, hundreds of liters of seawater are required for normal metaproteomic analysis due to the sparsity of microbial populations in seawater, which poses a substantial challenge to the widespread application of marine metaproteomics, particularly for deep seawater. Herein, a sensitive marine metaproteomics workflow, named sensitive marine metaproteome analysis (SMMP), was developed by integrating polycarbonate filter-assisted microbial enrichment, solid-phase alkylation-based anti-interference sample preparation, and narrow-bore nanoLC column for trace peptide separation and characterization. The method provided more than 8500 proteins from 1 L of bathypelagic seawater samples, which covered diverse microorganisms and crucial functions, e.g., the detection of key enzymes associated with the Wood-Ljungdahl pathway. Then, we applied SMMP to investigate vertical variations in the metabolic expression patterns of marine microorganisms from the euphotic zone to the bathypelagic zone. Methane oxidation and carbon monoxide (CO) oxidation were active processes, especially in the bathypelagic zone, which provided a remarkable energy supply for the growth and proliferation of heterotrophic microorganisms. In addition, marker protein profiles detected related to ammonia transport, ammonia oxidation, and carbon fixation highlighted that Thaumarchaeota played a critical role in primary production based on the coupled carbon-nitrogen process, contributing to the storage of carbon and nitrogen in the bathypelagic regions. SMMP has low microbial input requirements and yields in-depth metaproteome analysis, making it a prospective approach for comprehensive marine metaproteomic investigations.

Influence of environmental settings, including vegetation, on speciation of the redox-sensitive elements in the sediments of monomictic Lake Kinneret

AbstractThe redox conditions in the littoral limnic sediments may be affected by the penetration of plant roots which provide channels for oxygen transport into the sediment while decomposition of the dead roots results in consumption of oxygen. The goal of this work was to study the impact of environmental parameters including penetration of roots of Cyperus articulatus L. into the sediments on cycling of the redox-sensitive elements in Lake Kinneret. We measured roots content, porosity, and chemical parameters including pH, sulfur, iron and manganese speciation in the sediments from the shore, littoral and sublittoral zones with and without vegetation. Our results show that at ≥ 12 m water depth, the upper 10 cm of the sediments are affected by the active sulfur cycling with concentrations of hydrogen sulfide &gt; 70 μM near the sediment–water interface. Speciation of sulfur, iron, and manganese in the upper 10 cm of littoral sediments, which are covered by &lt; 20 cm of water, are affected by their permeability and, to a lesser extent, by roots penetration. In the case when sediments are not covered by water, oxygen penetration to the sediments by desiccation is an additional important control of the redox zonation in the surface sediments. In the shore sediments, despite relatively high concentrations of sulfate in the pore-waters, sulfur cycling may be described as “cryptic” as expressed by very low concentrations of hydrogen sulfide in the pore-waters. This is most likely a result of its fast reoxidation by the abundant highly reactive Fe(III) and Mn(IV) phases.

Enhanced nitrogen and phosphorus removal by iron-manganese mediated autotrophic denitrification in electrochemical system and the underlying mechanisms

At present, the research on Fe/Mn autotrophic denitrification is very limited, and the underlying mechanism in electrochemical system is not clear. In this study, an electrochemical system based on Fe-Mn autotrophic denitrification was constructed for the treatment of low C/N wastewater. The underlying mechanism and electrochemical process of Fe/Mn-mediated autotrophic denitrification were elucidated. The results showed that pyrite and manganese mineral matrix had no significant effect on COD removal, but had significant effect on nitrogen removal. R1 (activated carbon matrix) had the lowest nitrogen removal rate, with an average of 66.06 %. The mean removal rate of R2 (iron matrix) and R3 (manganese matrix) were 93.94 % and 95.89 %, respectively. The coupling of iron/manganese ammoxidation and autotrophic denitrification was the main mechanism to achieve efficient nitrogen removal. ICP and FIRT results showed that strong REDOX reactions of Fe, Mn and sulfur occurred at the anode of MFC. Direct precipitation of iron and manganese and electrochemical flocculation (FeOOH) effectively improved phosphorus removal. The phosphorus removal rates of R2 and R3 reached 93.89 % and 95.85 %, respectively. R3 has high electron transfer efficiency with a maximum voltage of 680 mV. Metagenomic analysis showed that 19 important transcripts associated with nitrogen metabolism pathways and 4 nitrogen metabolism pathways were detected. Enzymes encoded by nap A and nar G genes were abundant in R3 system. Reductase encoded by nrfA and nrfH genes was abundant in R2 system. Iron REDOX genes iroE, iroN, oorA, and manganese REDOX genes moxR, moxA were detected. The results of metabolic pathways and related enzymes further revealed the coupling cycle relationship between metal elements and nitrogen, phosphorus and sulfur in electrochemical systems. This study can not only provide a new method for efficient nitrogen and phosphorus removal of sewage, but also provide scientific basis for improving the geochemical cycle of metal elements and nitrogen elements.

Manure application influences microbial stoichiometry and alters microbial life strategies to regulate phosphorus bioavailability in low-P paddy soil

Microbial stoichiometry is pivotal in the soil elements cycle within terrestrial ecosystems. However, the impact of microbial stoichiometry on the phosphorus (P) pool transformation in low-P paddy soil, especially with manure addition, remains poorly understood. This study aimed to elucidate the response mechanism of microbial stoichiometry in regulating P pool transformation in two low-P paddy soils during a 60-day flooding-drought incubation. The results demonstrated that pig manure and vermicompost application significantly increased soil Olsen-P by 202–309 %, and microbial biomass P (MBP) by 54.4–79.3 % compared to no fertilization. Additionally, vermicompost treatment increased moderately labile organic P (MLPo) by 133–257 % and decreased fulvic acidassociated organic P (FAPo) by 10.5–25.4 % in Acrisol-flooding, Acrisol-drought, and Ultisol-drought, indicating that manure application improved the transformation of FAPo to MLPo. The microbial biomass carbon (MBC)/MBP ratio was lowest under Acrisol-flooding and highest under Ultisol-drought, suggesting that microorganisms adjust high ratios for stoichiometric stability and enhanced MBP utilization under deficient resource conditions. Manure treatments increased alkaline phosphatase (ALP) by 5.33–12.9 % under flooding conditions, indicating microorganisms facilitate the mineralization of soil organic P (Po). Compared to Acrisol-flooding, both ALP and β-1,4-glucosidase (BG) significantly increased by 103 % and 259 %, respectively, under Ultisol-drought, along with a positive correlation between BG and MLPo, implying that microorganisms enhance soil organic matter mineralization in resource-limited conditions by increasing C-acquiring enzymes and releasing Po. Additionally, the microbial community composition shifted from r-strategists to K-strategists, primarily by decreasing Proteobacteria and increasing Acidobacteria under resource deficiency and drought. The r-strategists directly mineralize Po by maintaining a low MBC/MBP and high ALP, while K-strategists indirectly mineralize Po by maintaining a high MBC/MBP and high BG. The findings suggest that manure application altered the resource status of low-P paddy soils, changed microbial stoichiometry, and influenced soil P availability through adjustments in microbial activity and extracellular enzyme production.

Long-term Application of Agricultural Amendments Regulate Hydroxyl Radicals Production during Oxygenation of Paddy Soils.

Hydroxyl radicals (•OH) play a significant role in contaminant transformation and element cycling during redox fluctuations in paddy soil. However, these important processes might be affected by widely used agricultural amendments, such as urea, pig manure, and biochar, which have rarely been explored, especially regarding their impact on soil aggregates and associated biogeochemical processes. Herein, based on five years of fertilization experiments in the field, we found that agricultural amendments, especially coapplication of fertilizers and biochar, significantly increased soil organic carbon contents and the abundances of iron (Fe)-reducing bacteria. They also substantially altered the fraction of soil aggregates, which consequently enhanced the electron-donating capacity and the formation of active Fe(II) species (i.e., 0.5 M HCl-Fe(II)) in soil aggregates (0-2 mm), especially in small aggregates (0-3 μm). The highest contents of active Fe(II) species in small aggregates were mainly responsible for the highest •OH production (increased by 1.7-2.4-fold) and naphthalene attenuation in paddy soil with coapplication of fertilizers and biochar. Overall, this study offers new insights into the effects of agricultural amendments on regulating •OH formation in paddy soil and proposes feasible strategies for soil remediation in agricultural fields, especially in soils with frequent occurrences of redox fluctuations.

The impact of insect herbivory on biogeochemical cycling in broadleaved forests varies with temperature

Herbivorous insects alter biogeochemical cycling within forests, but the magnitude of these impacts, their global variation, and drivers of this variation remain poorly understood. To address this knowledge gap and help improve biogeochemical models, we established a global network of 74 plots within 40 mature, undisturbed broadleaved forests. We analyzed freshly senesced and green leaves for carbon, nitrogen, phosphorus and silica concentrations, foliar production and herbivory, and stand-level nutrient fluxes. We show more nutrient release by insect herbivores at non-outbreak levels in tropical forests than temperate and boreal forests, that these fluxes increase strongly with mean annual temperature, and that they exceed atmospheric deposition inputs in some localities. Thus, background levels of insect herbivory are sufficiently large to both alter ecosystem element cycling and influence terrestrial carbon cycling. Further, climate can affect interactions between natural populations of plants and herbivores with important consequences for global biogeochemical cycles across broadleaved forests.

Organic carbon, major and trace element release from and adsorption onto particulate suspended matter of the Ob River, western Siberia

Particulate suspended matter (PSM) of rivers is a significant factor for carbon, nutrient, and trace metal transfer from land to ocean. Towards better understanding the role that PSM exerts on major and trace elements in riverine systems, here we report the results of an experimental study which utilizes a two-fold approach to assess interaction between PSM and riverine solutes. First, we measured element leaching (via desorption and dissolution in distilled water, simulating snow melt) from PSM of the largest Siberian river, the Ob River. Second, we quantified the capacity of PSM to adsorb dissolved organic carbon (DOC), macro- and micronutrients and trace elements from organic-rich waters of the river floodplain. We documented sizable desorption of organic carbon, some major and trace metals, oxyanions and insoluble elements from PSM; the majority (>50 %) of elements were released over the first hour of reaction. In contrast, PSM of the Ob River was capable of removing 20 to 90 % of dissolved OC, nutrients (Si, P), and trace elements from the tributary and floodplain fen. Our experiments demonstrated preferential adsorption of aromatic compounds large molecular size colloids. Taken together, the adsorption of solutes by PSM can sizably decrease the concentration and modify the molecular size distribution, and therefore the potential bioavailability of major (DOC, P, Si) and trace micronutrients. Overall, the PSM of the Ob River exhibited high reactivity with respect to natural waters and was capable of modifying the elemental composition of the tributary and floodplain fen waters. This transfer of organic carbon and nutrients in the surface-adsorbed (particulate) form is especially important during spring flood and requires specific consideration in short-term biogeochemical cycles of elements in continental waters.

Antagonistic conflict between transposon-encoded introns and guide RNAs.

TnpB nucleases represent the evolutionary precursors to CRISPR-Cas12 and are widespread in all domains of life. IS605-family TnpB homologs function as programmable RNA-guided homing endonucleases in bacteria, driving transposon maintenance through DNA double-strand break-stimulated homologous recombination. In this work, we uncovered molecular mechanisms of the transposition life cycle of IS607-family elements that, notably, also encode group I introns. We identified specific features for a candidate "IStron" from Clostridium botulinum that allow the element to carefully control the relative levels of spliced products versus functional guide RNAs. Our results suggest that IStron transcripts evolved an ability to balance competing and mutually exclusive activities that promote selfish transposon spread while limiting adverse fitness costs on the host. Collectively, this work highlights molecular innovation in the multifunctional utility of transposon-encoded noncoding RNAs.

Acceleration of phosphorus weathering under warm climates.

The release of phosphorous (P) via chemical weathering is a vital process that regulates the global cycling of numerous key elements and shapes the size of the Earth's biosphere. It has long been postulated that global climate should theoretically play a prominent role in governing P weathering rates. Yet, there is currently a lack of direct evidence for this relationship based on empirical data at the global scale. Here, using a compilation of temperature and P content data of global surface soils (0 to 30 cm), we demonstrate that P release does enhance at high mean annual surface temperatures. We propose that this amplification of nutrient supply with warming is a critical component of Earth's natural thermostat, and that this relationship likely caused expanded oceanic anoxia during past climate warming events. The potential acceleration of phosphorus loss from soils due to anthropogenic climate warming may pose threats to agricultural production, terrestrial and marine ecosystems, and alter marine redox landscapes.

Enrichment pattern of tungsten in sediments under methane seepage environments: Applicability as a proxy for tracing and reconstructing (paleo-)methane seepage

The release of hydrogen sulfide by sulfate-driven anaerobic oxidation of methane (SD-AOM) during methane seepage activities has a strong impact on the evolution of marine redox conditions and the cycles of redox-sensitive elements (e.g. Mo and U). Consequently, the sedimentary enrichment or depletion of these elements is often used to trace and reconstruct (paleo-)methane seepage activity. In recent years, tungsten (W) has shown promise as an indicator of marine redox changes, but its applicability to trace methane seepage activity is unknown. This study identified significant differences in the W content of sediments in methane seepage environments compared to suboxic environments not influenced by methane seepage and oxic environments in the South China Sea. The sediments subjected to methane seepage were characterized by low W contents, similar to those of euxinic Black Sea sapropels. It is believed that the sulfidic environment resulting from SD-AOM is the primary cause of W depletion in sediments subjected to methane seepage. By examining W's interaction with its twin element, Mo, we present WMo enrichment patterns in various environments. In methane seepage environment (sulfidic environments), sediments had high MoEF (> 10) and low WEF (< 2) with a high Mo/W molar ratio (> 10); in suboxic environments not influenced by methane seepage, sediments exhibited a WMo enrichment pattern similar to the UCC (the MoEF and WEF values are predominantly below 1 and 2, respectively, with a low Mo/W molar ratio, <1.5); in oxic environments (enrichment of FeMn (oxy)hydroxides), sediments exhibited high MoEF (2 < MoEF < 10) and high WEF (> 2), with a medium Mo/W molar ratio (1.5–10). This further indicates that the Mo/W molar ratio has great potential in tracing and reconstructing (paleo-)methane seepage activities.

Microplastics and their interaction with microorganisms in Bosten Lake sediment

Microplastics (MPs), discovered in oceans, lakes, and rivers, can infiltrate the food chain through ingestion by organisms, potentially posing health risks. Our research is the first to study the composition and distribution of MPs in Bosten Lake's sediment. In May, the average abundance of MPs was 0.95±0.72 particles per 10 gs, and in October, it was 0.90±0.61 particles per 10 gs. Bohu Town had the highest MP abundance, with 1.75±0.35 particles per 10 gs in spring and 2 ± 0 particles per 10 gs in autumn. In May, 53 % of the MPs were transparent, while in October, black MPs constituted 58 %. The predominant morphology was fibrous, accounting for 61 % of the total. MPs in the size range of 0.2–1 mm made up 91 % and 66 % of the total in May and October, respectively. The most common types of MPs in May were polyethylene terephthalate (PET) at 40 % and polyethylene (PE) at 26 %. In October, PET was the most prevalent at 71 %, followed by poly(ether-ether-ketone)(PEEK) at 11 %. Certain microbial taxa, such as Actinobacteriota, Pseudomonas, and Vicinamibacteraceae, associated with MP degradation or complex carbon chain breakdown, were notably enriched in sediment areas with high MP concentrations. A significant positive correlation was observed between the abundance of MPs in sediments and Actinobacteriota. Additionally, the abundance of Thiobacillus, Ca.competibacter, and other bacteria involved in soil element cycling showed a significant positive correlation with the organic matter content in the sediments. Anaerobic bacteria like Thermoanaerobacterium displayed a significant positive correlation with water depth. Our study reveals the presence, composition, and distribution of MPs in Bosten Lake's sediments, shedding light on their potential ecological impact.