Electron Localization Research Articles

Metal-Metal Bonding in Tri-Actinide Clusters: A DFT Study of [An3Cl6] z (z = 1-6) and [An3Cl6Cp3] z (z = -2- +3; An = Ac, Th, Pa, U, Np, Pu).

The actinide-actinide bonding in tri-actinide clusters [An₃Cl₆]ᶻ (An = Ac-Pu, z = 1-6) and [An₃Cl₆Cp₃]ᶻ (z =-2-+3; Cp = (η5-C5H5)) is studied using density functional theory. We find 3-centre bonding similar to the tri-thorium cluster [{Th(η⁸-C₈H₈)(μ₃-Cl)₂}₃{K(THF)₂}₂]∞, as we previously reported (Nature 2021, 598, 72-75). The population of 3-centre molecular orbitals (3c-MOs) by zero, one or two electrons correlates with shortening of the An-An bond lengths, which also decrease with increasing actinide atomic number, consistent with the contraction of the actinide valence atomic orbitals. Mulliken analyses indicate that these 3c-MOs predominantly involve An 6d and 5f orbitals. Various methods evidence the presence of An-An bonding in most systems with populated 3c-MOs, including bond orders (Mayer and Wiberg), quantum theory of atoms in molecules metrics (ρ, ∇²ρ, -G/V, H, delocalization indices), electron localization function, and electron density assessments. Additionally, we explore the effect of Cp ligand substitution on uranium complexes, finding that bulkier Cp ligands can induce U-U bond distortions and result in slightly longer U-U bonds. Overall, this study advances our understanding of metal-metal bonding in tri-actinide clusters, highlighting its effects on geometric and electronic structures.

Quasicrystalline 30° twisted bilayer graphene: fractal patterns and electronic localization properties

The recently synthesized 30° twisted bilayer graphene (30°-TBG) systems are unique quasicrystal systems possessing dodecagonal symmetry with graphene’s relativistic properties. We employ a real-space numerical atomistic framework that respects both the dodecagonal rotational symmetry and the massless Dirac nature of the electrons to describe the local density of states of the system. The approach we employ is very efficiency for systems with very large unit cells and does not rely on periodic boundary conditions. These features allow us to address a broad class of multilayer two-dimensional crystal with incommensurate configurations, particularly TBGs. Our results reveal that the 30°-TBG electronic spectrum consist of extended states together with a set of localized wave functions. The localized states exhibit fractal patterns consistent with the quasicrystal tiling.

Designing multicomponent hydrides with potential high Tc superconductivity

While hydrogen-rich materials have been demonstrated to exhibit high Tc superconductivity at high pressures, there is an ongoing search for ternary, quaternary, and more chemically complex hydrides that achieve such high critical temperatures at much lower pressures. First-principles searches are impeded by the computational complexity of solving the Eliashberg equations for large, complex crystal structures. Here, we adopt a simplified approach using electronic indicators previously established to be correlated with superconductivity in hydrides. This is used to study complex hydride structures, which are predicted to exhibit promisingly high critical temperatures for superconductivity. In particular, we propose three classes of hydrides inspired by the Fm[Formula: see text]m RH[Formula: see text] structures that exhibit strong hydrogen network connectivity, as defined through the electron localization function. The first class [RH[Formula: see text]X[Formula: see text]Y] is based on a Pm[Formula: see text]m structure showing moderately high Tc, where the Tc estimate from electronic properties is compared with direct Eliashberg calculations and found to be surprisingly accurate. The second class of structures [(RH[Formula: see text])[Formula: see text]X[Formula: see text]YZ] improves on this with promisingly high density of states with dominant hydrogen character at the Fermi energy, typically enhancing Tc. The third class [(R[Formula: see text]H[Formula: see text])(R[Formula: see text]H[Formula: see text])X[Formula: see text]YZ] improves the strong hydrogen network connectivity by introducing anisotropy in the hydrogen network through a specific doping pattern. These design principles and associated model structures provide flexibility to optimize both Tc and the structural stability of complex hydrides.

Electronic, thermodynamic, NLO, and spectroscopic properties of OAFLC compounds via DFT: A focus on 1F6B, 1F6Bi, 1F6BiN, and 1F6BN

This study presents a comprehensive quantum mechanical investigation of four novel liquid crystalline compounds: 1F6B, 1F6Bi, 1F6BiN, and 1F6BN. Using Density Functional Theory (DFT) with the B3LYP functional and 6-311G(d,p) basis set, we optimized the molecular geometries and analyzed their electronic and vibrational properties. Atomic Polar Tensor (APT) charge analysis showed significant charge distributions. Electrostatic potential (ESP) mapping identified potential reactive sites, while Electron Localization Function (ELF) and Localized Orbital Locator (LOL) analyses depicted the electron density distributions. Thermodynamic parameters indicated the compounds’ vibrational stability and responsiveness to thermal changes. Non-linear optical (NLO) properties were characterized by significant dipole moments and polarizabilities, suggesting potential in optoelectronic applications. Frontier molecular orbital analysis indicated stability with HOMO-LUMO gaps ranging from 4.15 to 4.64 eV. UV–Vis spectra revealed key electronic transitions, while Raman spectroscopy detailed various vibrational modes. The study offers valuable insights into the molecular behavior of these compounds, laying the groundwork for their future applications in material science and advanced technologies.

Ag Atom Induces Microstrain Environment around Cd Sites to Construct Diatomic Sites for Almost 100% CO2-to-CO Electroreduction.

Deeply understanding how local microstrain environment around diatomic sites influences their electronic state and adsorption is crucial for improving electrochemical CO2 reduction (eCO2R) reaction; however, precise engineering of the atomic microstrain environment is challenging. Herein, we fabricate Ag-CdTMT electrocatalysts with AgN2S2-CdN2S2 diatomic sites by anchoring Ag to the nodes of CdTMT (TMT = 2,4,6-trimercaptotriazine anion) coordination polymers. The Ag-CdTMT catalysts achieve approximately 100% Faradaic efficiency for CO reduction with an industrial level current density (∼200 mA cm-2 in H-cell). The embedded Ag atoms induce the formation of Ag-Cd diatomic sites with local microstrain, stretching Cd-N/S bonds, and reinforcing electron localization at Cd sites. The microstrain engineering and adjacent Ag atoms synergistically reduced Cd 4d-C 2p antibonding orbital occupancy for intensifying *COOH adsorption as the rate-determining step. This study provides novel insights into customizing the electronic structure of diatomic sites through strain engineering.

Experimental Realization of Fluoroborophene.

Borophene, an anisotropic metallic Dirac material exhibits superlative physical and chemical properties. While the lack of bandgap restricts its electronic chip applications, insufficient charge carrier density and electrochemical/catalytically active sites, restricts its energy storage and catalysis applications. Fluorination of borophene can induce bandgap and yield local electron injection within its crystallographic lattice. Herein, a facile synthesis of fluoroborophene with tunable fluorine content through potassium fluoride-assisted solvothermal-sonochemical combinatorial approach is reported. Fluoroborophene monolayers with lateral dimension 50 nm-5 µm are synthesized having controlled fluorine content (12-35%). Fluoroborophene exhibits inter-twinned crystallographic structure, with fluorination-tunable visible-range bandgap ≈1.5-2.5 eV, and density functional theory calculations also corroborate it. Fluoroborophene is explored for electrocatalytic oxygen evolution reaction in an alkaline medium and bestow a good stability. Tunable bandgap, electrophilicity and molecular anchoring capability of fluoroborophene will open opportunities for novel electronic/optoelectronic/spintronic chips, energy storage devices, and in numerous catalytic applications.

Realizing one-dimensional moiré chains with strong electron localization in two-dimensional twisted bilayer WSe2

Two-dimensional (2D) moiré systems based on twisted bilayer graphene and transition metal dichalcogenides provide a promising platform to investigate emergent phenomena driven by strong electron-electron interactions in partially filled flat bands. A natural question arises: Is it possible to expand the 2D correlated moiré physics to one-dimensional (1D) that electron-electron correlation is expected to be further enhanced? This requires selectively doping of 1D moiré chain, which seems to be not within the grasp of today's technology. Therefore, an experimental demonstration of the 1D moiré chain with partially filled electronic states remains absent. Here, we show that we can introduce 1D boundaries, separating two regions with different twist angles, in twisted bilayer WSe2 (tWSe2) by using scanning tunneling microscopy (STM) and demonstrate that the electronic states of 1D moiré sites along the boundaries can be selectively filled. The strong localized charge states of correlated moiré electrons in the 1D moiré chain can be directly imaged and manipulated by combining a back-gate voltage with the STM bias voltage. Our results open the door for realizing new correlated electronic states of the 1D moiré chain in 2D systems.

Vibrational Spectra and Computational Study of Amyl Acetate: MEP, AIM, RDG, NCI, ELF and LOL Analysis

This work is focused on biologically active neat amyl acetate and its solutions in ethanol/heptane. According to the experimental results, when the concentration of amyl acetate in the amyl acetate-ethanol solution decreases, the additional band appears on the low-frequency side. The primary reason for the formation of such additional band is the intermolecular hydrogen bonding between amyl acetate and ethanol. In the amyl acetate-heptane solution, as the concentration of amyl acetate in the solution decreases, the band corresponding to the C=O stretching vibrations shifted to a higher frequency. This is explained by the fact that heptane breaks intermolecular interactions in solution, resulting in a simpler spectral band corresponding to the C=O stretching vibrations. Calculations are also used to study interactions in amyl acetateethanol complexes and their spectral manifestations. When the complex formation energies are calculated, this energy increases with the number of molecules, but the average hydrogen bond energy per one bond remains unchanged. The density functional theory (DFT) method is used to analyze molecular structural parameters: Mulliken atomic charge distribution; thermodynamic parameters; molecular electrostatic potential (MEP) surface; atoms in molecules (AIM) analysis; quantum chemical parameters such as reduced density gradient (RDG) and noncovalent interaction (NCI) analysis; electron localization functions (ELF) analysis; and localized orbital locator (LOL) analysis.

Accelerating Small Electron Polaron Dissociation and Hole Transfer at Solid-Liquid Interface for Enhanced Heterogeneous Photoreaction.

In a photocatalysis process, quick charge recombination induced by small electron polarons in a photocatalyst and sluggish kinetics of hole transfer at the solid-liquid interface have greatly limited photocatalytic efficiency. Herein, we demonstrate hydrated transition metal ions as mediators that can simultaneously accelerate small electron polaron dissociation (via metal ion reduction) and hole transfer (through high-valence metal production) at the solid-liquid interface for improved photocatalytic pollutant degradation. Fe3+, by virtue of its excellent redox ability as a homogeneous mediator, enables the BiVO4 photocatalyst to achieve drastically increased photocatalytic degradation performance, up to 684 times that without Fe3+. The enhanced performance results from Fe(IV) species production (via Fe3+ oxidation) induced by dissociation of small electron polarons (via Fe3+ reduction), featuring an extremely low kinetic barrier (5.4 kJ mol-1) for oxygen atom transfer thanks to the donor-acceptor orbital interaction between Fe(IV) and organic pollutants. This work constructs a high-efficiency artificial photosynthetic system through synergistically eliminating electron localization and breaking hole transfer limitation at the solid-liquid interface for constructing high-efficiency artificial photosynthetic systems.

Adsorption and evolution of N2 molecules over ZnO monolayer: a combined DFT and kinetic Monte-Carlo insight

AbstractA large surface area, wide band gap, and unique bonding property between Zn and O atoms make the hexagonal ZnO monolayer attractive as a gas sensor. In the present work, the adsorption and evolution of nitrogen (N2) molecules over a ZnO monolayer have been studied using two different theoretical methods: van der Waals density functional theory (vdW-DFT) and kinetic Monte-Carlo (kMC) simulation. The adsorption and diffusion (hopping over the surface) energy of a N2 gas molecule has been calculated considering the different sites over the ZnO substrate using the revPBE-vdW functional. Bader charge, electron localization function analysis, density of states and band structure plotting have been used to understand the adsorption mechanism. Lateral repulsive interaction between two N2 molecules limits the maximum packing number of gas molecules within one hexagonal ring. The output of the vdW-DFT calculation has been fed to the kMC code to predict the rate of adsorption, desorption, and diffusion, along with the overall surface coverage at different temperatures and pressures. Finally, the change in the N2 adsorption energy has been predicted with the increase of the ZnO layer number.

Current Sheet Broadening due to Turbulence in Three-dimensional Collisionless Reconnection

The present study has investigated the statistical distribution of the current sheet width across the reconnection diffusion region by means of the 3D particle-in-cell simulations. The 3D reconnection layers are unstable to the flow shear instabilities, which results in electromagnetic (EM) turbulence generating effective magnetic dissipation around the x-line. The simulations are performed for several ion-to-electron mass ratios and computational domain sizes, which determine the fastest-growing mode in each simulation run. When the turbulence is weak, the current sheet width increases with the turbulence intensity, following a theoretical curve independent of the mass ratio and domain size. However, when the turbulence is stronger, the width saturates at a low level around 2 times the local electron inertia length, i.e., much smaller than the ion kinetic scales. It is found that the intense inductive electric field due to the EM turbulence is partly canceled out by the eddy viscous effect. As a result, the reconnection electric field is almost unchanged during the quasi-steady phase, regardless of the turbulence intensity. The result implies that the magnetohydrodynamic turbulence models are unlikely to be applicable to the reconnection diffusion region.

A study of optical properties and electron energy loss spectra of ZnS by linear response theory

The linear response theory has been applied to study the optical properties and electron energy loss spectra of ZnS. The ground state is built using the Full-Potential Linearized Augmented Plane Wave method. Thereafter, the electronic properties such as band structure and density of states are calculated. Calculations of electron energy loss spectra and optical properties are performed on the top of these ground state electronic properties. The calculations are performed using three exchange–correlation kernels namely, adiabatic local density approximation, long range contribution, and the bootstrap. The random phase approximation is also considered. An approach proposed by us to find the material dependent parameter α is used in long range contribution kernel to capture more accurate optical properties. Three values of α viz 0.78, 1.09, and 1.22 are considered. It is observed that the α = 0.78 gives very good results. This proposed scheme is found to work very well for ZnS also. The effect of local field and electron–hole interaction on the spectra is examined. For example after incorporating local field effect the high frequency dielectric constant ε∞ [i.e. ε1E→0eV ], reduces by 9.19, 12.26, 13.51 and 11.02% for random phase approximation, adiabatic local density approximation, long range contribution and bootstrap kernel respectively. In EELS plasmon peak positions are found using the three kernels and random phase approximation. A good accord with experimental results is noted after incorporating local field effects. It is observed that local field effect causes redshift of prominent peak (i.e. plasmon peak) in electron energy loss spectra by 0.61 eV.

The facile preparation of polydopamine-modified sepiolite and its adsorption properties and microscopic mechanism for cadmium ion

Natural sepiolite (SEP) has the characteristics of cation exchange, abundant reserves, low cost, and environmental friendliness, but its adsorption capacity for heavy metal pollutants is limited. Because polydopamine (PDA) molecules contain rich functional groups such as phenolic and amino groups, in the present work, dopamine and natural sepiolite were utilized as raw materials to prepare polydopamine-modified sepiolite composite (SEP/PDA) by simple co-precipitation method. According to Langmuir isotherm model, the maximum adsorption capacity of SEP/PDA for Cd2+ can reach 203.21 mg/g at 298 K. At the initial concentration of 100 mg/L, the adsorption capacity was 2.9 times that of natural sepiolite. The composite material has good reusability and anti-cationic interference performance and has 100 % removal ability of low concentration Cd2+ in actual electroplating wastewater. Density Functional Theory (DFT) calculations were performed to obtain the electronic structure information. To elucidate the microscopic mechanism, molecular surface analyses, Interaction Region Indicator (IRI), Atom In Molecules (AIM) theory, Bond Order Density (BOD), and Electron Localization Function (ELF) were conducted. These analyses revealed that the amino nitrogen and phenolic oxygen atoms in the dopamine molecules donate lone pair electrons to coordinate with cadmium ions. Polydopamine, which possesses multiple oxidation states, contains catechol, quinone, and indole or a lesser extend pyrrole groups that can complex with cadmium ions, resulting in the formation of a surface complex. This coordination significantly enhances the adsorption properties of the SEP/PDA composite.

The interplay of excitonic delocalization and vibrational localization in optical lineshapes: A variational polaron approach.

The dynamics of molecular excitonic systems are complicated by a competition between electronic coupling (which drives delocalization) and vibrational-electronic (vibronic) interactions (which tend to encourage electronic localization). A particular challenge of molecular systems is that they typically possess a large number of independent vibrations, with frequencies often spanning the entire spectrum of relevant electronic energy gaps. Recent spectroscopic observations and numerical simulations on a water-soluble chlorophyll-binding protein (WSCP) reveal a transition between two regimes of vibronic behavior, a Redfield-like regime in which low-frequency vibrations respond to a delocalized excitonic state, and a Förster-like regime where high-frequency vibrations act as incoherent excitations on individual pigments. Although numerical simulations can reproduce these effects, there is a need for a simple, systematic theory that accurately describes the smooth transition between these two regimes in experimental spectra. Here we address this challenge by generalizing the variational polaron transform approach of [Bloemsma et al., Chem. Phys. 481, 250 (2016)] to include arbitrary bath densities for systems with or without symmetry. We benchmark this theory against both numerical matrix-diagonalization methods and experimental 77K fluorescence spectra for two WSCP variants, obtaining quite satisfactory agreement in both cases. We apply this theory to offer an explanation for the large loss in apparent electronic coupling in the WSCP Q57K mutant and to examine the likely impact of the interplay between excitonic delocalization and vibrational localization on vibrational sideband shapes and apparent coupling strengths in high-resolution optical spectra for chlorophyll-protein complexes such as WSCP.

In Situ Molecular Reconfiguration of Pyrene Redox-Active Molecules for High-Performance Aqueous Organic Flow Batteries.

Aqueous organic flow batteries (AOFBs) hold great potential for large-scale energy storage, however, scalable, green, and economical synthetic methods for stable organic redox-active molecules (ORAMs) are still required for their practical applications. Herein, pyrene-based ORAMs are obtained via an in situ organic electrolysis strategy in a flow cell. It is revealed that the water attacking pyrenes restructured molecules to produce a variety of isomers and dimers during the electrolysis, which can be modulated by regulating the local electron cloud density and steric hindrance of pyrene precursors. As a result, the molecularly reconfigured pyrene-based catholytes, even without any further purification, achieved a high electrolyte utilization of ≈96% and volumetric capacity above 50AhL-1. Inspiringly, remarkable cell stability with almost no capacity decay for ≈70 days is achieved, benefiting from the robust aromatic structure of the pyrene cores. The insights into the in situ electrosynthesis of pyrene-based ORAMs provided in the work will provide guidance for designing ultra-stable ORAMs for AOFB applications.

Mechanistic studies on phosphine-catalyzed [4 + 3] annulation of β′-acetoxy allenoate with 1C,3N-dinucleophile

The mechanism and role of catalyst on the PPh3-catalyzed [4 + 3] annulation reaction have been systematically investigated using density functional theory (DFT) method. Based on the calculations, the possible mechanism contains six steps: nucleophilic addition of PPh3 to allenoate to give Z-configured intermediate, cleavage of CO bond for forming phosphonium diene, nucleophilic addition of phosphonium diene with anionic 1C,3N-dinucleophile, intramolecular [1,5]-proton shift, ring-closure, and dissociation of catalyst. Non-covalent interaction (NCI) analysis shows that the O⋯P interaction would be the key for leading to the Z-configured pathway more favorable and electron localization function (ELF) analysis indicates that the implication of PPh3 can significantly lower the energy barrier involved in CO cleavage process, which mainly because the addition of PPh3 reduces the electron density of CO bond and thus facilities the cleavage of CO bond. This theoretical study would provide some clues for understanding the role of catalyst in a catalytic reaction.

In-silico Study of Molecular Docking and Dynamics Simulations for N-Substituted Thiazolidinones Derived from (R)-Carvone Targeting PPAR-γ Protein: Synthesis and Characterization

In this article, we have selected the monoterpene (R)-carvone combined with thiazolidinone as scaffold. Moreover, this study details the synthesis, characterization, and theoretical analysis of novel (R)-Carvone-thiazolidinone-N-substituted derivatives, sourced from natural (R)-Carvone. The compounds were identified using HRMS, and 1H- and 13C-NMR spectral data. A theoretical analysis provided insights into the stability observed experimentally. The local electronic properties and topological features of two compounds 3 and d were studied using the Multiwfn tool and CrystalExplorer software. Specifically, the electron localization function, localized orbital locator and average local ionization energy were mapped to explore electron distribution, while interaction region indicator was used to analyze intermolecular interactions. An in silico docking study was conducted on the PPAR-γ protein to evaluate the binding affinity and interactions. Furthermore, a 200 ns molecular dynamics simulation was performed to confirm the stability of the compounds within the PPAR-γ protein’s binding site. The results indicated consistent stability for all three compounds under dynamic conditions. Lastly, in silico evaluations of drug-likeness and toxicity prediction showed that all compounds adhere to the criteria of both Lipinski’s Rule of Five and Jorgensen’s Rule of Three, confirming their potential as drug candidates.

Structure prediction of stable sodium germanides at 0 and 10 GPa

In this paper we used random structure searching (AIRSS) to carry out a systematic search for crystalline Na-Ge materials at both 0 and 10 GPa. The high-throughput structural relaxations were accelerated using a machine-learned interatomic potential (MLIP) fit to density-functional theory (DFT) reference data, allowing ∼1.5 million structures to be relaxed. At ambient conditions we predict three new Zintl phases, Na3Ge2,Na2Ge, and Na9Ge4, to be stable and a number of Ge-rich layered structures to lie in close proximity to the convex hull. The known NaδGe34 clathrate and Na4Ge13 host-guest structures are found to be relatively stabilized at higher temperature by vibrational contributions to the free energy. Overall, the low-energy phases exhibit exceptional structural diversity, with the expected mixture of covalent and ionic bonding confirmed using the electron-localization function (ELF). The local Ge structural motifs present at each composition were determined using smooth overlap of atomic positions (SOAP) descriptors and the Ge-K edge was simulated for representatives of each motif, providing a direct link to experimental x-ray absorption spectroscopy (XAS). Two Ge-rich phases are predicted to be stable at 10 GPa; NaGe3 and NaGe2 have simple kagome and simple hexagonal Ge lattices respectively with Na contained in the pores. NaGe3 is isostructural with the MgB3 and MgSi3 family of kagome superconductors and remains dynamically stable at 0 GPa. Removing the Na from NaGe2 results in the hexagonal lonsdalite Ge allotrope, which has a direct band gap. Published by the American Physical Society 2024

Hirshfeld Atom Refinement (HAR) and Complementary Bonding Analysis of Lithium m-Terphenylhydridoborates Containing B-H···Li Linkages.

The synthesis and characterization of the lithium m-terphenylhydridoborates [Li(2,6-Mes2C6H3)BH3]2 (1), Li(2,6-Mes2C6H3)2BH2 (2) and Li(OEt2)(2,6-Mes2C6H3)2BH2 (3) are reported. Hirshfeld Atom Refinement (HAR) of the experimentally obtained molecular structures by single-crystal X-ray crystallography allowed the determination of the exact positions of the hydrogen atoms. The bond situations of the various B-H···Li linkages were investigated by a complementary bonding analysis using various methods including atoms in molecules (AIM), electron localizability indicator (ELI-D), non-covalent interaction (NCI) index and the compliance matrix.

Regulating Local Electron Distribution of Cu Electrocatalyst via Boron Doping for Boosting Rapid Absorption and Conversion of Nitrate to Ammonia

AbstractThe electrochemical reduction of nitrate to ammonia (NO3RR) is an effective route to ammonia synthesis with the characteristics of low energy input. However, the complex multi‐electron/proton transfer pathways associated with this reaction may trigger the accumulation of competitive by‐products. Herein, boron (B)‐doped Cu electrode (denoted as B–Cu2O/Cu/CP) as “all‐in‐one” catalyst is prepared by one‐step electrodeposition strategy. Caused by the B doping, the charge redistribution and local coordination environment of Cu2O/Cu species are modulated, resulting in the exposure of active sites on the Cu2O/Cu/CP catalyst. In‐situ Fourier transform infrared spectroscopy and theoretical investigations demonstrate that both Cu2O and Cu sites modulated by B can effectively enhance the adsorption of NO3− and facilitate the conversion of intermediate by‐products, thus promoting the direct reduction of NO3− to NH3. Consequently, a remarkable Faradaic efficiency of 92.74% can be obtained on B–Cu2O/Cu/CP catalyst with minimal accumulation of by‐products. It is expected that this work, based on the heterogeneous B doping, will open a maneuverable and versatile way for the design of effective catalysts.