The numerous solar energies provide humans with clean, environmentally friendly, and abundant energy resources. Electricity shortages and high diesel prices have an impact on rural water irrigation systems and drinking water supplies. Solar energy for water pumping could be an alternative to standard electric and diesel pumping systems. The rising importance of solar photovoltaic water pumping systems (SPVWPS) as a feasible power source in rural, inaccessible, and unconnected areas drives the study. These locations, often in poor nations like India, lack conventional power. Solar energy is converted into electrical energy via photovoltaic (PV) technology, which is then used to power a DC or AC submersible or surface water pump. PV module configurations are crucial in improving a PV system’s performance. Many researchers have studied the solar water pumping design on series parallel combination and acquired the best system efficiency, but the other configurations, Total Cross Tied (TCT) and Bridge Link (BL) have never been employed in a solar water pumping system. This research aims to investigate the experimental comparison of different PV configurations for better system efficiency on different operating parameters. These PV array layouts were considered in a uniform situation. The result shows that power increases with increase in radiation and the flow rate provided by (6Sx2P) configuration is 18,956 l/day of water and calculated the best average pump efficiency.