Egyptian Cultivars Research Articles

Metabolic profiling and antioxidant activity of fenugreek seeds cultivars ‘Giza 2’ and ‘Giza 30’ compared to other geographically-related seeds

This study addresses a comparative comprehensive metabolic profiling of two Egyptian cultivars of fenugreek (Trigonella foenum-graecum L.) seeds ‘Giza 2’ and ‘Giza 30’ via RP-HPLC-DAD-QTOF-MS and MS/MS. Briefly, 126 metabolites were detected in the samples under investigation, being classified into hydroxybenzoic acids (8), hydroxycinnamic acids (7), flavonoids (49 with a predominancy of flavones in particular apigenin derivatives), coumarins (1), furostanol saponins (17), alkaloids (2), amino acids (11), peptides (2), jasmonates (6), nucleosides (30), organic acids (16), terpenoids (1), and sugars (3). In addition, the total phenolic content and antioxidant activity were determined and compared with other geographically related seeds (chickpea Giza-1, sesame Giza-32, and linseed, Giza-10), showing slight differences among them but higher values than the other geographically related seeds that were segregated from them upon chemometric analysis. This is the first comprehensive metabolic profiling of these cultivars, presenting an initial account of some metabolites found in Fabaceae, such as apigenin di C pentoside, with a significant occurrence of biologically active furostanol saponins. It gives a prospect of fenugreeks richness of bioactive metabolites as an essential functional food that could add value to the food and nutraceutical industries' sustainability.

Revealing the Genetic Diversity and Population Structure of Garlic Resource Cultivars and Screening of Core Cultivars Based on Specific Length Amplified Fragment Sequencing (SLAF-Seq).

Garlic is an important vegetable and condiment that has good medical and health care effects. At present, the origin of Chinese garlic and its association with other types of quality are limited to the molecular marker level, and there are few reports at the genome level. Therefore, this study is based on the specific length amplified fragment sequencing (SLAF-seq) of 102 copies of garlic germplasm resources, the group structure, and further screening of the core germplasm. SLAF-seq of 102 garlic cultivars yielded 1949.85 Mb of clean data and 526,432,275 SNPs. Through principal component analysis, evolutionary tree, population structure, and genetic relationship analysis, all garlic cultivars were divided into 3 groups. Among them, Group 1 contains 45 Chinese cultivars and 1 Egyptian cultivar, which are distributed mainly in the coastal and central areas of China. Group 2 contains 36 Chinese cultivars and 1 U.S. cultivar, which are distributed mainly in Northwest China. Group 3 contains 19 Chinese cultivars, which are distributed mainly in Xinjiang, China. The genetic diversity results indicate that the fixation index (Fst) values of Group 1 and Group 2 are lower than those of Group 1 and Group 3 and that the diversity of nucleotides (π) of Group 3 is greater than those of Group 2 and Group 1. Finally, the 30 parts of the cultivars were used as the core germplasms, and there was no difference between the two cultivars in terms of core quality. In summary, this study provides tags for the determination of garlic molecular markers and genotypes and provides a theoretical basis for subsequent resource protection and utilization, genetic positioning of important agronomic traits, and molecular marking agglomeration breeding.

Enhanced wound healing activity of naturally derived Lagenaria siceraria seed oil binary nanoethosomal gel: formulation, characterization, in vitro/in vivo efficiency

BackgroundThe present study aims to enhance the wound healing potential of the seed oil (SO) of Lagenaria siceraria (Egyptian cultivar) via the preparation of SO-loaded binary nanoethosomal (SO-BNE) gels. SO-BNEs were prepared using 23 factorial design, characterized for vesicle size, zeta potential, polydispersity index, linoleic and oleic acid EE% for ensuring improved skin permeability. The L. siceraria SO, optimized SO-BNE gels (0.5% and 5%) and Mebo® were topically applied in full-thickness wounded rat model twice daily for 10 days.ResultsIn the SO-BNE gel groups, the normal appearance of the skin architecture and structure of the dermis was revealed. In addition, the levels of NRF2, TGF-β1 and FOXO1, collagen type I, SMA-α and MIP2 were significantly elevated. The wound healing potential of SO-BNE gels was proposed to be via suppression of oxidative stress and stimulation of skin regeneration biomarkers. Furthermore, the SO screening through GC/MS unveiled high percentages of unsaturated fatty acids. SO was also found to be nontoxic to human skin fibroblast cells; enhanced viability and migration rates at concentration of 50 g/mL by 99.76% and 75.9%, respectively.ConclusionThese findings demonstrate that the Lagenaria siceraria SO-loaded BNE gels represent a promising delivery for wound healing with enhanced release and bioavailability.

Origins and Genetic Characteristics of Egyptian Peach.

Peach (Prunus persica), a significant economic fruit tree in the Rosaceae family, is extensively cultivated in temperate and subtropical regions due to its abundant genetic diversity, robust adaptability, and high nutritional value. Originating from China over 4000 years ago, peaches were introduced to Persia through the Silk Road during the Han Dynasty and gradually spread to India, Greece, Rome, Egypt, Europe, and America. Currently grown in more than 80 countries worldwide, the expansion of peach cultivation in Egypt is mainly due to the development and utilization of peach varieties with low chilling requirements. These varieties exhibit unique phenotypic characteristics such as early maturity, reduced need for winter cold temperatures, low water requirements, and high economic value. In this study, a systematic analysis was conducted on the genetic characteristics and kinship relationships of peaches with low chilling requirements in Egypt. We conducted a comprehensive evolutionary and Identity-by-Descent (IBD) analysis on over 300 peach core germplasm resources, including Egyptian cultivars with low chilling requirements, to investigate their origin and genetic characteristics. The evolutionary analysis revealed that 'Bitter almond' is closely related to China's wild relative species Prunus tangutica Batal, while 'Early grand' shares one branch with Chinese ornamental peach cultivars, and 'Nemaguard' clusters with some ancient local varieties from China. The IBD analysis also indicated similar genetic backgrounds, suggesting a plausible origin from China. Similarly, the analysis suggested that 'Swelling' may have originated from the Czech Republic while 'Met ghamr' has connections to South Africa. 'Desert red', 'Early swelling', and 'Florida prince' are likely derived from Brazil. These findings provide valuable insights into the genetic characteristics of Egyptian peach cultivars. They offer a significant foundation for investigating the origin and spread of cultivated peaches worldwide and serve as a valuable genetic resource for breeding low chilling requirement cultivars, which is of considerable significance for the advancement of peach cultivation in Egypt.

Deciphering the wheat seed core mycobiome of two Egyptian cultivars (Giza 171 and Sids 14) by using high throughput amplicon sequencing of the ITS2 region

Wheat (Triticum aestivum L.) is an important food crop throughout the world. The seed mycobiome is the primary inoculum affecting the overall health and productivity of wheat plants. Seed-borne fungi can have an impact on the production of wheat and cause health complications upon consumption. Therefore, for durable and sustainable wheat production, it is imperative to characterise the wheat mycobiome. The rationale of this study was to investigate the wheat seed mycobiome of two Egyptian wheat cultivars (Sids 14 and Giza 171) using a culture-independent technique. The fungal community in 6 wheat seed samples was identified by high-throughput amplicon sequencing of the ITS2 region using the Illumina MiSeq platform. A total of 162 genera, 111 families, 55 orders and 25 classes have been identified. The fungal communities detected varied between seed samples, with a higher abundance of Ascomycota followed by Basidiomycota. Potential beneficial and pathogenic genera could be detected. Interestingly, a higher abundance of Vishniacozyma, Epicoccum, Cladosporium, Blumeria, Stymphylium, Fusarium, Filobasidium, and Alternaria was observed in the samples. Both Anthracocystis and Nigrospora were detected exclusively in T. aestivum cv. Giza 171. These results open new avenues for further investigation on the role of the mycobiome in Egyptian wheat cultivars. Ultimately, precise identification of both beneficial and pathogenic fungal genera could be accomplished.

Cadmium and zinc accumulation and tolerance in two Egyptian cultivars (S53 and V120) of Helianthus annuus L. as potential phytoremediator

One of the most important oil crops in the world, sunflower (Helianthus annuus L.), is recognized to help in soil phytoremediation. Heavy metal (HM) contamination is one of the most abiotic challenges that may affect the growth and productivity of such an important crop plant. We studied the influence of HM-contaminated soils on metal homeostasis and the potential hypertolerance mechanisms in two sunflower Egyptian cultivars (V120 and S53). Both cultivars accumulated significantly higher cadmium concentrations in their roots compared to their shoots during Cd and Zn/Cd treatments. Higher root concentrations of 121 mg g−1 dry weight (DW) and 125 mg g−1 DW were measured in V120 plants compared to relatively lower values of 111 mg g−1 DW and 105 mg g−1 DW in the roots of S53 plants, respectively. Cadmium contamination significantly upregulated the expression of heavy metal ATPases (HaHMA4) in the shoots of V120 plants. On the other hand, their roots displayed a notable expression of HaHMA3. This study indicates that V120 plants accumulated and sequestered Cd in their roots. Therefore, it is advised to cultivate the V120 cultivar in areas contaminated with heavy metals as it is a promising Cd phytoremediator.

The Egyptian wheat cultivar Gemmeiza-12 is a source of resistance against the fungus Zymoseptoria tritici

BackgroundWheat is one of the world’s most important cereal crops. However, the fungal pathogen Zymoseptoria tritici can cause disease epidemics, leading to reduced yields. With climate change and development of new agricultural areas with suitable environments, Z. tritici may advance into geographical areas previously unaffected by this pathogen. It is currently unknown how Egyptian wheat will perform in the face of this incoming threat. This project aimed to assess the resistance of Egyptian wheat germplasm to Z. tritici, to identify cultivars with high levels of resistance and characterise the mechanism(s) of resistance present in these cultivars.ResultsEighteen Egyptian wheat cultivars were screened against two Z. tritici model isolates and exhibited a wide spectrum of responses. This ranged from resistance to complete susceptibility to one or both isolates tested. The most highly resistant cultivars from the initial screen were then tested under two environmental conditions against modern UK field isolates. Disease levels under UK-like conditions were higher, however, symptom development on the cultivar Gemmeiza-12 was noticeably slower than on other Egyptian wheats. The robustness of the resistance shown by Gemmeiza-12 was confirmed in experiments mimicking Egyptian environmental conditions, where degree of Z. tritici infection was lower. The Kompetitive allele-specific PCR (KASP) diagnostic assay suggested the presence of an Stb6 resistant allele in several Egyptian wheats including Gemmeiza-12. Infection assays using the IPO323 WT and IPO323ΔAvrStb6 mutant confirmed the presence of Stb6 in several Egyptian cultivars including Gemmeiza-12. Confocal fluorescence microscopy demonstrated that growth of the IPO323 strain is blocked at the point of stomatal penetration on Gemmeiza-12, consistent with previous reports of Stb gene mediated resistance. In addition to this R-gene mediated resistance, IPO323 spores showed lower adherence to leaves of Gemmeiza-12 compared to UK wheat varieties, suggesting other aspects of leaf physiology may also contribute to the resistance phenotype of this cultivar.ConclusionThese results indicate that Gemmeiza-12 will be useful in future breeding programs where improved resistance to Z. tritici is a priority.

Molecular, morphological, palynological and biochemical characterization of six accessions of two Mangifera indica L cultivars (Keitt and Ewais) native to Egypt

AbstractAccurate characterization of crops or fruits leads to successful improvements in breeding programs. Mango (Mangifera indica L.) is the second most common fruit in Egypt. It is a heterozygous plant; consequently, the possibility of incorrect characterization is significant. Therefore, this study used six accessions of two M. indica cultivars, ‘Keitt’ and ‘Ewais’, to produce precise molecular characterization and prove their genetic relatedness using inter-simple sequence repeat (ISSR) and start codon targeted (SCoT) markers. Pollen morphology was studied for the first time for these two Egyptian cultivars to determine their correlation. Morphological traits were quantitatively and qualitatively investigated. In addition, phytochemical analyses were performed to correlate the six mango accessions. One of these accessions (accession 3) was commercially identified as ‘Ewais’ cv., but the obtained result revealed that it does not belong to ‘Ewais’ cv. This finding was proved molecularly using ISSR and SCoT markers and morphologically. Similarly, phytochemical analyses revealed a difference between accession 3 and the other accessions under investigation. Polymorphic information content (PIC) and resolving power (RP) data revealed that the SCoT technique was more informative than ISSR for studying these genotypes of mango. Accordingly, the present findings prove the necessity for molecular, morphological, palynological, and biochemical investigations for accurate characterization of mango genotypes and genetic relatedness for improving breeding programs.

Enhancing in vitro regeneration via somatic embryogenesis and Fusarium wilt resistance of Egyptian cucumber (Cucumis sativus L.) cultivars

BackgroundSomatic embryogenesis offers a reliable method for cucumber (Cucumis sativus L.) regeneration and genetic enhancement against Fusarium wilt. This study aimed to establish a tailored somatic embryogenesis system for Egyptian cultivars, fostering genetic improvements and Fusarium wilt-resistance lines. ResultsEmploying the Optimal Arbitrary Design (OAD) approach, we optimized the induction medium, initiating prolific embryogenic calli (53.3 %) at 1 mg/L 2,4-D. The cotyledonary leaf (CL) was the preferred explant, showing 60 % embryogenic callus development. Bieth Alpha exhibited higher responsiveness, generating ∼ 18 somatic embryos per explant compared to Prince's ∼ 10. Somatic embryogenesis system validation used quantitative RT-PCR, showing Cucumis sativus splicing factor 3B subunit (CUS1) and an embryogenesis marker gene expression exclusively within embryogenic calli and mainly during embryogenesis initiation. Evaluating fungal toxin filtrate concentrations for selecting embryogenic calli, the S2 selection (25 % filtrate, four subculture cycles) was chosen for somatic embryo development. To gauge the ramifications of selection at the genetic stratum, an in-depth analysis was executed. A cluster analysis grounded in ISSR banding patterns revealed a distinct separation between in vivo-cultivated plants of the two cultivars and regenerated plants devoid of pathogen filtrate treatment or those regenerated post-filtrate treatment. This segregation distinctly underscores the discernible genetic impact of the selection process. ConclusionsThe highest embryogenic capacity (53.3%) was achieved in this study by optimizing the induction stage, which demonstrated the optimal concentrations of BA and 2,4-D for induced proembryonic masses. Moreover, consistent gene expression throughout both stages of embryogenesis suggests that our system unequivocally follows the somatic embryogenesis pathway.

Response of Three Garlic Allium Sativum L. Genotypes to Potassium Fertilization Levels

A field experiment was carried out at the Agricultural Research Station of the College of Agriculture, the University of Anbar for the season (2021-2022) in order to study the effect of different levels of potassium fertilization on the growth, yield and quality of bulbs for three garlic genotypes. The experiment included the use of four levels of potassium fertilization (0, 150, 200, 250) kg/ha, respectively, it was added to three garlic genotypes (local, Chinese, and Egyptian). The study was carried out as a factorial experiment in a randomized complete block design (R.C.B.D) with three replicates. The results showed that the local cultivar was immunologically superior in vegetative growth characteristics (plant height, leaf area) and reached 100.44 cm and 7.08 cm2 compared to the lowest plant height achieved by plants of the Egyptian cultivar, which amounted to 55.17 cm and the lowest leaf area achieved by the Chinese cultivar plant, which reached 6.96 dm2. The local cultivar and the level of fertilization 250 kg / ha also excelled in the yield trait, as it achieved the highest weight of heads, the highest number of cloves and the highest yield per unit area 91.93 g per clove, 36.24 clove per plant, 36.24 ton / ha compared to the lowest amount achieved by plants of the Chinese cultivar without fertilizing.

Chemometric Approach for Profiling of Metabolites of Potential Antioxidant Activity in Apiaceae Species Based on LC-PDA-ESI-MS/MS and FT-NIR

Chemometrics is a tool for data mining and unlocking the door for solving big data queries. Apiaceae is a family species which is commonly cultivated worldwide. Although members of this species are widely used as antioxidant, antibacterial, antifungal, and anti-inflammatory agents, their metabolites profiling remains ambiguous. Based on WHO support, chemometrics has been used in evaluating the quality and authenticity of the herbal products. The objective of this study is to profile and characterize phenolic metabolites in nine species from Egyptian cultivars and three different species of German cultivars from the Apiaceae family using multivariate analysis after LC-PDA-ESI-MS/MS and near infrared spectroscopy data are generated. Principal component analysis was successfully applied to distinguish between the nine Egyptian cultivars and the three German cultivars, and hierarchical cluster analysis also confirmed this distinctive clustering. Partial least square regression (PLS-R) models showed a relationship between phytochemicals and antioxidant activities. The metabolites responsible for the clustering pattern and variables important for projection (VIP) were identified, being twelve amongst nine Egyptian cultivar samples and thirteen amongst the Egyptian cultivar and the German cultivar comparison. The identified VIPs were also correlated with the antioxidant activity using PLS-R. In conclusion, the study showed novelty in the application of hyphenated analytical techniques and chemometrics that assist in quality control of herbal medicine.

Exploring the Genetic Variation of Stripe Rust Foliar and Head Infection in Egyptian Wheat as an Effect of Climate Change

Wheat stripe rust (Puccinia striiformis Westend f. sp. tritici; Pst) is a severe disease that affects wheat-growing areas worldwide. In the last few years, Pst head infection (PstHI) was recorded to cause severe yield damage in Egypt. Little information is known about PstHI. In the current study, a set of 34 Egyptian cultivars were evaluated for their Pst foliar infection (PstFI) and PstHI in two growing seasons (2021 and 2022) in Egypt. High genotypic variations in PstFI and PstHI were found. A very weak correlation was found between the resistance to PstFI and PstHI in both growing seasons. Therefore, the resistance to each symptom might be controlled by different genetic systems. The effect of PstFI and PstHI on kernel traits was investigated. PstHI was found to significantly reduce kernel width and weight in heavily diseased years. Therefore, a significant reduction in wheat yield and quality is expected in case of severe PstHI. Three Egyptian genotypes were resistant to PstFI and PstHI in both growing seasons. These genotypes could help in improving the resistance to both symptoms. However, due to the low genetic distance among them, looking for additional sources of resistance is recommended. In 2021, higher head infection was found compared with 2022. Highly significant differences in maximum temperature, minimum temperature, maximum dew point, and average dew point were found between the two growing seasons. Out of these four factors, dew point and ambient temperature were found to be possible reasons for increasing PstHI. Furthermore, 51 isolines carrying different resistance genes were included in the evaluation. At least ten stripe rust resistance genes were found to be effective against PstFI and PstHI. These ten genes should be included in future breeding programs to improve Pst resistance and understand the effect of climate change on Pst.

Metabolic and genotypic mechanisms involved in early defensive response of powdery mildew-infected wheat

Early defensive responses of powdery mildew-infected wheat were investigated in 17 Egyptian cultivars and 21 universal powdery mildew resistance genes at seedling and adult plant stages under greenhouse conditions. Genotypic responses revealed that none of the Egyptian cultivars confer complete resistance under inoculation with Blumeria graminis f. sp. tritici. Giza-168, Misr-1, Misr-2, and Giza-171 appear to have good partial resistance to the disease, while In Sakha-93, Sakha-94 and Sids-12 exhibited susceptibility. Six genes, Pm1b, Pm3a, Pm34, Pm37, NCA6, MIAG12 and NCAG13 specific all-stage resistance, six genes, Pm1a, Pm2a, Pm3b, Pm4a, Pm6, and Pm8 showed seedling susceptibility, while highest disease severities were observed in only two genes Pm6 and Pm8. Metabolic analysis of powdery mildew-infected wheat revealed a significant increase in oxidative enzyme activities (PPO, POX, CAT), Chl. a, Chl. b and carotene contents in the moderately resistant cultivars. However, increasing in electrolyte leakage was observed in susceptible cultivars. Negative correlations were recorded between powdery mildew severity and each of PPO, POX, CAT, Chl. a, Chl. b, and Car, while a positive correlation was recorded with Electrolyte leakage. Molecular assay of resistance gene Pm38 revealed gene identification in moderately resistant cultivars and was correlated with the resistance degrees. Early defense response is dependent on metabolic and genotypic mechanisms that are controlled by the expression of resistance genes.

Genetic diversity analysis in wheat cultivars using SCoT and ISSR markers, chloroplast DNA barcoding and grain SEM

BackgroundWheat is a major cereal that can narrow the gap between the increasing human population and food production. In this connection, assessing genetic diversity and conserving wheat genetic resources for future exploitation is very important for breeding new cultivars that may withstand the expected climate change. The current study evaluates the genetic diversity in selected wheat cultivars using ISSR and SCoT markers, the rbcL and matK chloroplast DNA barcoding, and grain surface sculpture characteristics. We anticipate that these objectives may prioritize using the selected cultivars to improve wheat production. The selected collection of cultivars may lead to the identification of cultivars adapted to a broad spectrum of climatic environments.ResultsMultivariate clustering analyses of the ISSR and SCoT DNA fingerprinting polymorphism grouped three Egyptian cultivars with cultivar El-Nielain from Sudan, cultivar Aguilal from Morocco, and cultivar Attila from Mexico. In the other group, cultivar Cook from Australia and cultivar Chinese-166 were differentiated from four other cultivars: cultivar Cham-10 from Syria, cultivar Seri-82 from Mexico, cultivar Inqalab-91 from Pakistan, and cultivar Sonalika from India. In the PCA analysis, the Egyptian cultivars were distinct from the other studied cultivars. The rbcL and matK sequence variation analysis indicated similarities between Egyptian cultivars and cultivar Cham-10 from Syria and cultivar Inqalab-91 from Pakistan, whereas cultivar Attila from Mexico was distinguished from all other cultivars. Combining the data of ISSR and SCoT with the rbcL and matK results retained the close resemblance among the two Egyptian cultivars EGY1: Gemmeiza-9 and EGY3: Sakha-93, and the Moroccan cultivar Aguilal, and the Sudanese cultivar El-Nielain and between Seri-82, Inqalab-91, and Sonalika cultivars. The analysis of all data distinguished cultivar Cham-10 from Syria from all other cultivars, and the analysis of grain traits indicated a close resemblance between cv. Cham-10 from and the two Egyptian cultivars Gemmeiza-9 and Sakha-93.ConclusionsThe analysis of rbcL and matK chloroplast DNA barcoding agrees with the ISSR and the SCoT markers in supporting the close resemblance between the Egyptian cultivars, particularly Gemmeiza-9 and Sakha-93. The ISSR and SCoT data analyses significantly expressed high differentiation levels among the examined cultivars. Cultivars with closer resemblance may be recommended for breeding new wheat cultivars adapted to various climatic environments.

Evaluation of genetic diversity among Saudi Arabian and Egyptian cultivars of alfalfa (Medicago sativa L.) using ISSR and SCoT markers

Medicago sativa (Alfalfa) is valued for its high nutrient content as livestock feed for the production of dairy and meat products globally. The genetic improvement of alfalfa is limited because it is an allogamous autotetraploid. In this study, Inter-simple sequence repeat (ISSR) and start codon targeted (SCoT) markers were used to assess the extent of genetic divergence between sixteen cultivars: twelve from Saudi Arabia and four from Egypt. The genetic diversity was assessed using eleven ISSR and eight SCoT primers. The ISSR primers produce 163 amplified bands with an average of 14.82 bands per primer and 60% polymorphism. The SCoT primers reveal 150 bands, with an average of 18.75 bands per primer and 77% polymorphism. The dendrogram clustered the Saudi and Egyptian cultivars into two distinct populations. The information revealed here will help in the breeding program of alfalfa, which will produce more drought tolerant and high-yielding varieties.

Growth, Photosynthesis, and Yield of Two Egyptian and Two Foreign Wheat Cultivars: A Comparative Study

This study aimed to cultivate and compare four wheat cultivars: two Egyptian cultivars (Misr 1 and Sohag 5) and two foreign cultivars (Russian and Ukrainian). During the vegetative growth, the Egyptian cultivars (Misr 1 and Sohag 5) exceeded the foreign cultivars (Russian and Ukrainian) in terms of shoot system length and fresh weight. Misr 1 and Sohag 5, surpass their foreign counterparts in plant height, spike length, heads per square meter, grain production, and overall yield. Among the four cultivars, Misr 1, Sohag 5, and Ukrainian wheat grains exhibit similar lengths, while the Russian grain stands out as the shortest. Sohag 5 surpasses its counterparts with the thickest and widest grains. Notably, the grains obtained after cultivation exceeded the dimensions of the original wheat grains. In terms of photosynthetic pigments, chlorophyll A decreased in most cultivars at the end of the vegetative growth. Whereas all cultivars showed an increase in chlorophyll B at the same period. Carotenoid content increased in Misr 1, Russian, and Ukrainian cultivars, except for Sohag 5, where carotenoids decreased throughout the growth period.

The Antioxidant and Enzyme Inhibitory Potential of n-Hexane-Extracted Oils Obtained from Three Egyptian Cultivars of the Golden Dewdrop Duranta erecta Linn. Supported by Their GC-MS Metabolome Analysis and Docking Studies.

Duranta erecta Linn. has a longstanding history for use in folk remedy for several disorders. Its hydroalcoholic extract has been investigated intensely in the treatment of many ailments, but to date very few data are presented to explain the pharmacological use of its oil. In this study, the chemical profiles of the leaf oils extracted from three Egyptian Duranta erecta cultivars, namely ‘Green’, ‘Golden edge’, and ‘Variegata’ are traced using GC-MS analysis. D. erecta ‘Green’ showed predominance of vitamin E (22.7%) and thunbergol (15%) whereas D. erecta ‘Golden edge’ and ‘Variegata’ contained tetratetracontane as a major component in their oils. The highest phenolic and flavonoid contents, displayed as gallic acid and rutin equivalents per gram oil, respectively, were observed in the ‘Golden edge’ and ‘Variegata’ cultivars, which was reflected by their strong DPPH and ABTS scavenging activities as well as the highest reducing power in both CUPRAC and FRAP assays. D. erecta ‘Green’ displayed better metal chelating potential, which may be attributed to its content of vitamin E. All cultivars showed similar enzyme inhibitory profiles. The best inhibition of α-glucosidase and α-amylase was observed by D. erecta ‘Green’. In silico studies of the major constituents docked on the active sites of the target enzymes NADPH oxidase, amylase, glucosidase, butyrylcholinesterase, and tyrosinase revealed high binding scores, which justified the biological activities of the tested oils.

A comparative study on the metabolites profiling of linseed cakes from Egyptian cultivars and antioxidant activity applying mass spectrometry-based analysis and chemometrics

Linseed (Linum usitatissimum L.) is an economically important crop worldwide. After the oil extraction, the cake is generated as a by-product. This study addresses an untargeted profiling of the cakes of four Egyptian cultivars of linseed via RP-HPLC-DAD-QTOF-MS and MS/MS. Totally, 162 metabolites were detected in the samples, being classified into hydroxybenzoic acids (20), hydroxycinnamic acids (20), flavonoids (59), lignans (9), coumarins (1), amino acids (8), peptides (3), cyanogenic glycosides (6), jasmonates (15), nucleosides (2), organic acids (16), and sugars (3). Upon employing principal component analysis and hierarchical cluster analysis, the cultivars were adequately grouped, suggesting that this approach can serve for origin traceability. Besides, the total phenol content and antioxidant activity were determined and in the same line with the previous results. As far as we know, this is the first comprehensive metabolic profiling of linseed cakes that gives a prospect of its relevance for the food industry.

Direct and Indirect Selection for Grain Yield and Grain Weight in Late Generations of Bread Wheat under Drought Stress and Normal Irrigation Environments.

Two cycles of pedigree selection for grain yield/plant (GY/P) and grain weight (GW) (100-grain weight) were imposed under drought stress and normal irrigation to study the direct and indirect selection of GY/P and GW in bread wheat. The selection started in the F6-generation (Cycle0-C0) of bread wheat (Triticum aestivum L.) traced back to the cross (Giza 164/Sids 4) of two Egyptian cultivars. The narrow sense heritability was higher under drought than under normal irrigation and increased by selection. Under drought, the observed direct gain after two cycles of selection for GW was 21.51% (p ≤ 0.01), and accompanied with an indirect gain in GY/P of 15.52%. The observed direct gain for GY/P was 17.98% and the indirect gain in GW was 13.81%. Under normal irrigation, the observed direct gain for GW was 12.86% and the indirect gain for GY/P was 16.04%. The direct gain in GY/P was 16.04% and the indirect gain in GW was 11.95%. The genotypic correlations were different in both environments before and after selection. Single trait selection was effective in improving the selection criterion, and selection greatly affected gene associations.

Transcriptome data mining towards characterization of single nucleotide polymorphisms (SNPs) controlling salinity tolerance in bread wheat

Here, we utilize the available next-generation sequencing (NGS) data to develop robust markers differentiating between salt-tolerant and sensitive wheat cultivars. First, we analyzed multi-transcriptomic datasets for salt-tolerant cultivars to identify the shared differentially expressed genes (DEGs). The identified shared DEGs (31 sDEGs) were extracted and compared to available wheat reference genomes to obtain all single-nucleotide polymorphisms (SNPs). Interestingly, six shared SNPs (sSNPs) were identified across four genes including the MIOX-1 gene. For in silico validation of MIOX-1 expression, we compared transcriptomes of salt-tolerant and sensitive wheat cultivars. Interestingly, the expression of the MIOX-1 gene was significantly down-regulated in the tolerant compared to the sensitive. Therefore, the SNP located in the promotor area of the MIOX-1 gene was further analyzed to predict the transcription factor binding sites. The results revealed that the occurrence of this sSNP is irreplaceable and positioned in the WRKY-1 binding site. The expression of the WRKY-1 gene was consistent between salt-tolerant and salt-sensitive wheat cultivars, indicating that the WRKY-1 had no influence on the MIOX-1 gene expression and these SNP might positively affect the salinity tolerance. For SNP in vitro validation, we used two Egyptian cultivars with opposite salinity responses (tolerant: Sakha-93 and sensitive: Gemmeiza-9). The allele-specific polymerase chain reaction results revealed that Gemmeiza-9 was heterozygous (C/G), whereas the Sakha-93 was homozygous (C/C), indicating that these SNPs might affect positively the response of wheat cultivars to tolerate the salinity. Ultimately, these SNPs could serve as a powerful marker for accelerating wheat breeding programs.