Efficient Segregation Research Articles

Engineering a Synthetic RNA Segregation System

AbstractCells possess a number of active segregation machineries for both chromosomal and large extrachromosomal DNA elements to avoid stochastic loss during cell division. In contrast, system that can be exploited for active, general segregation of RNA molecules including mRNAs or self‐replicating RNA constructs are currently lacking. Here, we present an artificial RNA segregation system derived from the bacterial type II ParMRC plasmid segregation system and the RNA coliphage MS2. We show that fusing the partition protein ParR with the MS2 RNA coat protein enables specific binding to microbeads decorated with RNA‐repeats of the archetypical MS2 RNA operator hairpin. Addition of the actin homologue ParM protein triggers efficient and rapid microbeads segregation via ATP‐dependent ParM polymerization. Our new RNA partitioning system could be used for specific localization of mRNAs and/or the stable maintenance of self‐replicating RNA vectors in various contexts such as living and artificial cells.

The obscuring effect of magma recharge on the connection of volcanic-plutonic rocks

Abstract The current debate on volcanic-plutonic connection is centered on whether efficient liquid-crystal segregation dominates the evolution of a mushy reservoir to produce evolved, crystal-poor rhyolite and cumulate leftover. However, magma recharge may remarkably influence the evolution of a mushy reservoir and obscure the evidence of liquid-crystal segregation. This complexity poses a challenge to exploring the connection of volcanic-plutonic rocks. This study investigates the Qinzhou Bay granitic complex (~250–248 Ma) from South China, which contains crystal-poor (<19 vol%) peraluminous rhyolites and subsequent crystal-rich (28–54 vol%) porphyries. Although the rhyolite and porphyry units have a close spatio-temporal link, they do not share a fractionation trend and similar whole-rock Sr-Nd-O isotopic compositions; thus, a direct connection is not evidenced. We further present textural analyses, mineral and melt inclusion compositions, thermobarometry (the combination of Ti-in-zircon thermometer and Ti-in-quartz thermobarometer), and thermodynamic modeling to examine the alternative interpretations, i.e., the two units may have intrinsically independent origins or the connection of the two units has been obscured. For the rhyolite unit, thermobarometric results reveal a polybaric storage system consisting of middle (>600 ± 80 MPa) and upper (~150 ± 40 and ~60 ± 20 MPa) crustal reservoirs. Variations in quartz Fe content and chlorine-rich, metaluminous melt inclusions suggest that magma hybridization with less-evolved metaluminous magmas occurred at both crustal levels. In particular, the elevated Fe contents in the quartz population that crystallized at the shallowest level (~60 ± 20 MPa) suggest that recharge magmas were directly injected into the shallowest reservoir. Deviation of the whole-rock composition from the liquid evolution trend recorded in melt inclusions suggests a combined effect of magma mixing and crystal-melt segregation processes in upper crustal reservoirs. Thermodynamic modeling and mass balance calculations suggest that the whole-rock composition of the rhyolite could be reproduced by mixing between regionally exposed dacites and segregated melts at crystallinities of 50–60% (using parental magma represented by the least-evolved melt inclusion). For the porphyry unit, thermobarometric results reveal magma storage at middle (more than 450 ± 40 to 550 ± 40 MPa) and upper (110 ± 20 to 140 ± 20 MPa) crustal levels. The small-scale oscillatory zonation of plagioclase, the pervasive resorption of quartz and alkali feldspar, and the presence of peraluminous microgranular enclaves in the porphyries suggest a recharge event of metasediment-sourced magmas, triggering reactivation and convection of the reservoir. Autoclastic and overgrowth textures of quartz, plagioclase, and alkali feldspar phenocrysts and development of columnar jointing suggest that the reactivated porphyritic magmas ascended and emplaced at ultrashallow levels (~30 ± 10 MPa). Because of the similar storage pressures, the porphyries may represent remobilized cumulates of rhyolitic magmas, whereas the texture and geochemistry of the cumulate-liquid pair were modified, a key factor rendering a cryptic connection between the rhyolite and porphyry. Alternatively, the plumbing systems feeding the rhyolite and porphyry units are horizontally independent or vertically discrete, but this circumstance is inconsistent with the same evolution trend of quartz Fe and Al contents of the rhyolite and porphyry. Our study highlights that whole-rock composition may record blended information of complex processes, and caution should be taken when whole-rock composition is used to extract information of a single process. Multi-method constraints are required to evaluate the influence of recharge processes on the modification of liquid-cumulate records, and big data analysis on the basis of geochemistry should be conducted with caution to avoid biased understanding.

Clinico-genetic and prognostic analyses of 716 patients with primary myelodysplastic syndrome and myelodysplastic syndrome/acute myeloid leukemia based on the 2022 International Consensus Classification.

The 2022 International Consensus Classification (ICC) recategorized myeloid neoplasms based on recent advances in the understanding of the biology of hematologic malignancies, in which myelodysplastic syndrome (MDS) with blasts of 10%-19% is classified as MDS/acute myeloid leukemia (AML), MDS with mutated SF3B1, irrespective of the number of ring sideroblasts, as MDS-SF3B1, and those with multi-hit TP53 mutations as MDS with mutated TP53. In the analysis of 716 patients with MDS diagnosed according to the 2016 WHO classification, we found that 75.3% of patients remained in the MDS group based on the ICC, while 24.7% of patients were reclassified to the MDS/AML group after the exclusion of 15 patients who were classified to the AML group. Patients with MDS/AML showed a distinct mutational landscape and had poorer outcomes, compared to those with MDS. In the MDS group, patients with MDS-SF3B1 had higher frequencies of DNMT3A and TET2 mutations than those with MDS, not otherwise specified, with single lineage dysplasia or multilineage dysplasia. Patients with mutated TP53 were associated with dismal outcomes, irrespective of the blast percentage. In conclusion, this study showed that the ICC facilitates efficient segregation and risk-stratification of MDS which can help guide the treatment choice of patients with the disease.

Stabilization of DNA fork junctions by Smc5/6 complexes revealed by single-molecule imaging.

SMC complexes play key roles in genome maintenance, where they ensure efficient genome replication and segregation. The SMC complex Smc5/6 is a crucial player in DNA replication and repair, yet many molecular features that determine its roles are unclear. Here, we use single-molecule microscopy to investigate Smc5/6's interaction with DNA. We find that Smc5/6 forms oligomers that dynamically redistribute on dsDNA by 1D diffusion and statically bind to ssDNA. Using combined force manipulation and single-molecule microscopy, we generate ssDNA-dsDNA junctions that mimic structures present in DNA repair intermediates or replication forks. We show that Smc5/6 accumulates at these junction sites, stabilizes the fork, and promotes the retention of RPA. Our observations provide a model for the complex's enrichment at sites of replication stress and DNA lesions from where it coordinates the recruitment and activation of downstream repair proteins.

Profiling a single-stranded DNA region within an rDNA segment that affects the loading of bacterial condensin.

Bacterial condensin preferentially loads onto single-stranded DNA (ssDNA) invitro and onto rDNA invivo to support proper chromosome compaction. Thus, the actively transcribing rDNA would provide the ssDNA region for the loading of bacterial condensin. We attempted to detect the ssDNA region in the rrnI gene in situ. Non-denaturing sodium bisulfite treatment catalyzed the conversion of cytosines to thymines (CT-conversion) at the melted DNA of a genome. Using next-generation sequencing, we generated an average of 11,000 reads covering each cytosine on the rDNA segment. In principle, the CT-conversion rate is an accurate guide to detect ssDNA segment. We detected multiple ssDNA segments throughout the rDNA. The deletion mutations of the rDNA hindered the ssDNA formation at the 100-500bp segment downstream of the promoter. These data support the idea that the ssDNA segment plays a crucial role as the condensin-loading site and suggest the mechanism of condensin loading onto rDNA.

Formation, cooling history and age of impact events on the IIE iron parent body: Evidence from the Miles meteorite

Most iron meteorites formed in planetary cores during differentiation, but the IIE iron meteorites have chemical and physical features that are inconsistent with this origin. By combining mineral chemistry, mineral modes and three-dimensional petrography, we reconstruct the bulk chemistry of the felsic silicate-bearing Miles IIE iron meteorite and demonstrate that the silicate inclusion compositions are similar to partial melts produced experimentally from an H chondrite composition. We use the reconstructed bulk composition, mineralogy and thermodynamic modelling to show that melting above ∼1200°C under reducing conditions formed metal (Fe-Ni alloy) and felsic silicate partial melts. Upon cooling, the melts crystallized Mg-rich pyroxenes, Na- and K-rich feldspars, and tridymite. Importantly, this mechanism enriches cosmochemically volatile elements (i.e., those with a 50% condensation temperature of ∼430–830°C, like Na and K) to the level found in the felsic silicate inclusions.The presence of crystallographically disordered srilankite (only stable above 1160°C) and an absence of Widmanstätten texture require both high peak temperatures and rapid cooling, which cannot be explained by core formation. Instead they point to small melt volumes, a transient heat pulse, and small thermal mass, and imply efficient physical segregation of silicate and metallic melts through buoyancy separation followed by rapid cooling that arrested the separation of metal and silicate liquid phases. In situ 207Pb/206Pb age of 4542.3 ± 4.0 Ma in Zr-oxide and phosphate minerals dates the melting event that formed the silicate inclusions. This age aligns with the earliest ages found in other IIE iron meteorite silicates and requires a heating event ∼25 million years after the solar system formed. We found 39Ar/40Ar ages of 3495 ± 52 Ma (low-T) and 4303 ± 7 Ma (high-T) in a K-feldspar grain, with the 3495 Ma age aligning with later thermal events recorded in other IIE iron meteorites. Dating reveals the complex petrogenetic and thermal history of Miles and the IIE iron meteorites. This is the first IIE iron meteorite found to record evidence of heating at 4.5 and 3.5 Ga likely from impact events.We propose that high-velocity impact(s) into an iron-rich, porous chondritic parent body at ∼4.54 Ga produced immiscible metal and silicate melts that cooled rapidly and trapped low density silicate inclusions within high density metal. Other IIE irons that formed at lower peak temperatures (900–1000°C) contain chondritic silicate inclusions and relict chondrules, supporting this conceptual model. This petrogenesis is consistent with thermodynamic modelling, experimental data and the wide range of peak temperatures and cooling rates observed in the IIE iron meteorites.

Newfound features of meiotic chromosome organization that promote efficient congression and segregation in Caenorhabditis elegans oocytes.

Although end-on microtubule-kinetochore attachments typically drive chromosome alignment, Caenorhabditis elegans oocytes do not form these connections. Instead, microtubule bundles run laterally alongside chromosomes and a ring-shaped protein complex facilitates congression (the "ring complex", RC). Here, we report new aspects of RC and chromosome structure that are required for congression and segregation. First, we found that in addition to encircling the outside of each homologous chromosome pair (bivalent), the RC also forms internal subloops that wrap around the domains where cohesion is lost during the first meiotic division; cohesin removal could therefore disengage these subloops in anaphase, enabling RC removal from chromosomes. Additionally, we discovered new features of chromosome organization that facilitate congression. Analysis of a mutant that forms bivalents with a fragile, unresolved homolog interface revealed that these bivalents are usually able to biorient on the spindle, with lateral microtubule bundles running alongside them and constraining the chromosome arms so that the two homologs are pointed to opposite spindle poles. This biorientation facilitates congression, as monooriented bivalents exhibited reduced polar ejection forces that resulted in congression defects. Thus, despite not forming end-on attachments, chromosome biorientation promotes congression in C. elegans oocytes. Our work therefore reveals novel features of chromosome organization in oocytes and highlights the importance of proper chromosome structure for faithful segregation during meiotic divisions.

Recent applications of the Successive Self-nucleation and Annealing thermal fractionation technique

Successive Self-nucleation and Annealing (SSA) is a thermal fractionation technique that is performed by Differential Scanning Calorimetry (DSC). The combination of non-isothermal and isothermal steps applied during SSA achieves efficient molecular segregation during polymer crystallization. Such molecular segregation magnifies the effect of defects in polymer chain crystallization, thereby providing information on chain structure. The technique was created and implemented by Müller and co-workers in 1997, becoming a powerful resource for studying ethylene/α-olefin copolymers. The different variables to design the SSA protocol: fractionation window, fractionation time, scanning rate, sample mass, and the first self-nucleation temperature to be applied (Ts, ideal), have been previously reviewed, together with the different applications of SSA. SSA versatility, simplicity (when properly applied), and short times to produce results have allowed its use to study novel and more complex polymeric systems. This review article explores the most recent applications of SSA of the past decade. First, the principles of the technique are briefly explained, covering all the relevant variables. Next, we have selected different cases that show how SSA is employed in various novel fields, such as studying intermolecular interactions and topological effects in homopolymers; supernucleation and antinucleation effects in nanocomposites, including the pre-freezing phenomenon; crystallization modes in random copolymers; solid-solid transitions; miscibility, co-crystallization and composition in blends; evaluation of polymer synthesis variables; and the novel information that could be gained by using fast scanning chip-based calorimetry. Finally, we offer a perspective on SSA, a technique that has become a powerful method for studying the distribution of defects affecting crystallization in semi-crystalline polymers.

Characterization of the DNA Binding Domain of StbA, A Key Protein of A New Type of DNA Segregation System

Low-copy-number plasmids require sophisticated genetic devices to achieve efficient segregation of plasmid copies during cell division. Plasmid R388 uses a unique segregation mechanism, based on StbA, a small multifunctional protein. StbA is the key protein in a segregation system not involving a plasmid-encoded NTPase partner, it regulates the expression of several plasmid operons, and it is the main regulator of plasmid conjugation. The mechanisms by which StbA, together with the centromere-like sequence stbS, achieves segregation, is largely uncharacterized. To better understand the molecular basis of R388 segregation, we determined the crystal structure of the conserved N-terminal domain of StbA to 1.9 Å resolution. It folds into an HTH DNA-binding domain, structurally related to that of the PadR subfamily II of transcriptional regulators. StbA is organized in two domains. Its N-terminal domain carries the specific stbS DNA binding activity. A truncated version of StbA, deleted of its C-terminal domain, displays only partial activities in vivo, indicating that the non-conserved C-terminal domain is required for efficient segregation and subcellular plasmid positioning. The structure of StbA DNA-binding domain also provides some insight into how StbA monomers cooperate to repress transcription by binding to the stbDR and to form the segregation complex with stbS.

Cell division: The science friction of chromosome attachment

During mitosis, chromosomes must bind spindle microtubules via kinetochores in a stable yet dynamic manner to ensure rapid frictionless movements. A recent study identifies the first complex that specifically reduces friction in the kinetochore-microtubule interface to ensure efficient chromosome segregation.

Origin of magmatic and tectonic fabrics in the Remal granite-gneiss, Singhbhum Craton, India

AbstractIn the Singhbhum Craton of the Indian shield, the Remal granite-gneiss preserves felsic magmatic fabrics onto which a low-temperature segregation layering has been superposed. Planar, sub-horizontal to gently dipping layers (Sign1) comprise K-feldspar megacrysts, plagioclase and quartz, with the base of each layer defined by segregations of biotite. Sign2 consists of trough cross-bedded layers composed of K-feldspar phenocrysts, plagioclase and quartz with biotite schlieren defining the base of each layer. Microstructural features such as concentrically arranged mineral inclusions in K-feldspar phenocrysts and graphic intergrowth textures testify to the magmatic origin of these fabrics, with insignificant subsequent metamorphic reconstitution. The tectonic fabric S1 has developed sub-parallel to localized greenschist-facies mylonite bands, and is defined by weakly aligned flakes of biotite. Crystallographic preferred orientations away from the mylonitized domains show a strong alignment of K-feldspar, quartz and biotite parallel to the magmatic fabric due to efficient segregation during magmatic flow. Quartz crystallographic preferred orientations within the mylonitized domains show a strong preferred orientation and dextral asymmetry. Temperature constraints from synkinematic chlorites along with estimates of deformation temperature from quartz crystallographic preferred orientations indicate that mylonitization occurred at the lower limits of quartz crystal plasticity. The results of combined thermodynamic and multiphysics modelling studies show that felsic magmas can undergo significant convective motion for a wide range of crystallinities and water contents before solidification. Additionally, segregation layering resembling a gneissosity can develop at low temperatures owing to localized mylonitization and concomitant dissolution–precipitation of biotite.

Photocatalytic properties of BiOBr/g-C3N4 heterojunctions originated from S-scheme separation and transfer of interfacial charge pairs

Construction of heterojunctions is an available approach to overcome the defects of a single photocatalyst. In this work, BiOBr/g-C3N4 S-scheme heterojunctions were prepared by a microwave hydrothermal approach. The crystal structures, morphologies, and photoinduced charge separation behavior of the BiOBr/g-C3N4 heterojunctions were studied by some analytic techniques. The experimental results reveal that all the BiOBr/g-C3N4 heterojunctions display superior photocatalytic activities to g-C3N4 and BiOBr under visible light exposure, in particular, the sample with 2% molar ratio of BiOBr/g-C3N4 presents the highest photocatalytic performance. The boosted photocatalytic property of BiOBr/g-C3N4 heterojunctions is ascribed to S-scheme segregation and transfer of interfacial charge pairs. Following this mechanism, the efficient segregation of photogenerated carriers can be achieved, at the same time, the robust redox ability of photo-generated e−/h+ pairs can be maintained. This work contributes a reference to develop highly efficiency g-C3N4 based photocatalyst for photocatalytic decomposition of contaminants.

Cover Picture: Trap Inlaid Cationic Hybrid Composite Material for Efficient Segregation of Toxic Chemicals from Water (Angew. Chem. Int. Ed. 32/2022)

A unique anion exchangeable hybrid composite aerogel material was fabricated by strategically implanting a stable cationic metal–organic polyhedron in a hierarchically porous metal–organic gel material by Sujit K. Ghosh and co-workers in their Research Article (DOI: 10.1002/anie.202203385). The composite scavenger efficiently and selectively sequestrates various metal-based toxic oxoanions from natural and simulated industrial waste-water samples in both batch and dynamic column exchange sorption experiment.

Titelbild: Trap Inlaid Cationic Hybrid Composite Material for Efficient Segregation of Toxic Chemicals from Water (Angew. Chem. 32/2022)

Titelbild: Trap Inlaid Cationic Hybrid Composite Material for Efficient Segregation of Toxic Chemicals from Water (Angew. Chem. 32/2022)

Trap Inlaid Cationic Hybrid Composite Material for Efficient Segregation of Toxic Chemicals from Water

AbstractMetal‐based oxoanions are potentially toxic pollutants that can cause serious water pollution. Therefore, the segregation of such species has recently received significant research attention. Even though several adsorbents have been employed for effective management of chemicals, their limited microporous nature along with non‐monolithic applicability has thwarted their large‐scale real‐time application. Herein, we developed a unique anion exchangeable hybrid composite aerogel material (IPcomp‐6), integrating a stable cationic metal–organic polyhedron with a hierarchically porous metal–organic gel. The composite scavenger demonstrated a highly selective and very fast segregation efficiency for various hazardous oxoanions such as, HAsO42−, SeO42−, ReO4−, CrO42−, MnO4−, in water, in the presence of 100‐fold excess of other coexisting anions. The material was able to selectively eliminate trace HAsO42− even at low concentration to well below the AsV limit in drinking water defined by WHO.

Trap Inlaid Cationic Hybrid Composite Material for Efficient Segregation of Toxic Chemicals from Water.

Metal-based oxoanions are potentially toxic pollutants that can cause serious water pollution. Therefore, the segregation of such species has recently received significant research attention. Even though several adsorbents have been employed for effective management of chemicals, their limited microporous nature along with non-monolithic applicability has thwarted their large-scale real-time application. Herein, we developed a unique anion exchangeable hybrid composite aerogel material (IPcomp-6), integrating a stable cationic metal-organic polyhedron with a hierarchically porous metal-organic gel. The composite scavenger demonstrated a highly selective and very fast segregation efficiency for various hazardous oxoanions such as, HAsO42- , SeO42- , ReO4- , CrO42- , MnO4- , in water, in the presence of 100-fold excess of other coexisting anions. The material was able to selectively eliminate trace HAsO42- even at low concentration to well below the AsV limit in drinking water defined by WHO.

FtsK and SpoIIIE, coordinators of chromosome segregation and envelope remodeling in bacteria.

The translocation of DNA during bacterial cytokinesis is mediated by the SpoIIIE/FtsK family of proteins. These proteins ensure efficient chromosome segregation into sister cells by ATP-driven translocation of DNA and they control chromosome dimer resolution. How FtsK/SpoIIIE mediate chromosome translocation during cytokinesis in Gram-positive and Gram-negative organisms has been the subject of debate. Studies on FtsK in Escherichia coli, and recent work on SpoIIIE in Bacillus subtilis, have identified interactions between each translocase and the division machinery, supporting the idea that SpoIIIE and FtsK coordinate the final steps of cytokinesis with completion of chromosome segregation. Here we summarize and discuss the view that SpoIIIE and FtsK play similar roles in coordinating cytokinesis with chromosome segregation, during growth and differentiation.

Binary dopant segregation enables hematite-based heterostructures for highly efficient solar H2O2 synthesis

Dopant segregation, frequently observed in ionic oxides, is useful for engineering materials and devices. However, due to the poor driving force for ion migration and/or the presence of substantial grain boundaries, dopants are mostly confined within a nanoscale region. Herein, we demonstrate that core–shell heterostructures are formed by oriented self-segregation using one-step thermal annealing of metal-doped hematite mesocrystals at relatively low temperatures in air. The sintering of highly ordered interfaces between the nanocrystal subunits inside the mesocrystal eliminates grain boundaries, leaving numerous oxygen vacancies in the bulk. This results in the efficient segregation of dopants (~90%) on the external surface, which forms their oxide overlayers. The optimized photoanode based on hematite mesocrystals with oxide overlayers containing Sn and Ti dopants realises high activity (~0.8 μmol min−1 cm−2) and selectivity (~90%) for photoelectrochemical H2O2 production, which provides a wide range of application for the proposed concept.

Boosted photocatalytic NO removal performance by S-scheme hierarchical composites WO3/Bi4O5Br2 prepared through a facile ball-milling protocol

• Composites WO 3 /Bi 4 O 5 Br 2 were constructed via a facile ball-milling protocol. • The structure-effect relationship was successfully established. • These binary composites showed enhanced photocatalytic NO removal efficiencies. • A plausible S-scheme model was speculated in photocatalysis mechanism. It is crucial to develop an efficient system of high photocatalytic capability over NO removal and simultaneous avoidance of toxic NO 2 formation. In this study a serious of hierarchical composites WO 3 /Bi 4 O 5 Br 2 (WB) were successfully fabricated by a facile ball-milling protocol and systematically characterized by various analytical techniques. Both expected ingredients were realized and coexisted in composites to generate heterojunction structures by microstructural analyses. Under visible light irradiation, these samples were exposed to photocatalytic removal of NO measurements, where aforementioned binary hierarchical WB composites showed reinforced NO removal efficiency with the high selectivity for NO 3 – /NO 2 – species in comparison to bare WO 3 and Bi 4 O 5 Br 2 , mainly associating to the efficient migration and spatial segregation of charge carries through heterojunction domains with suitable phase composition instead of the slightly varied visible light absorption and specific surface area. In addition, a possible photocatalysis mechanism was deduced in a S-scheme model by active species determination and band structures estimation of these robust catalysts. This investigation shed light on the facile fabrication of hierarchical composites via the ball-milling treatment with enhanced photocatalytic removal of low concentration NO in ppb level under visible light.

Significantly enhanced grain boundary Zn and Ca co-segregation of dilute Mg alloy via trace Sm addition

Increasing the level of grain boundary (GB) segregation is one of the effective strategies for the preparation of new high-performance Mg alloys. Here based on careful experimental design, we clearly demonstrate that the addition of trace Sm could significantly increase the GB segregation concentration of Zn and Ca in the as-extruded dilute Mg–Zn–Ca–Mn alloy, and confirm that the increased GB segregation could improve the yield strength of the as-extruded alloy and further inhibit the grain growth and the separation of the segregation atmosphere from GBs during annealing. The proposed idea of multi-element promoting efficient GB segregation is expected to contribute to the design strategy of advanced Mg alloys.