In this paper, a new framework for iterative speckle noise reduction in polarimetric synthetic aperture radar (SAR) data is introduced. Speckle is inherent to all coherent imaging systems and affects SAR imagery in the form of strong intensity variations in pixels with similar backscattering coefficients. This makes the interpretation of SAR data in several applications a difficult task. The proposed framework includes a preprocessing step capable of dealing with noise correlation usually found in single-look data. The general filtering approach is based on the Beltrami flow for denoising manifolds or images painted on manifolds. The principal contribution of this work is to adapt this approach to deal with covariance or coherency matrices instead of optical imagery. The evaluation presented suggests that this approach allows for good spatial and radiometric preservation compared to other state-of-the-art methods. Experiments are performed on the basis of synthetic and real-world experimental data. The validation of the proposed framework is accomplished using two refined error performance measures and the well-known effective number of looks measured. The source code of a parallel implementation of the proposed framework is released under the MPL 2.0 ( https://www.mozilla.org/en-US/MPL/2.0/ ) alongside this paper.