Ridging cultivation and root restriction cultivation are beneficial due to their improvement of the soil permeability in the root zone of grapevine, and they are widely used in southern China, Japan, and other countries. However, with the intensification of global warming, when using ridging or root restriction cultivation, the soil temperature in the root zone can often reach 30 °C or even more than 35 °C during the summer, which is not conducive to the growth of grapevines. The aim of this study was to explore the effects of high root zone temperatures on the photosynthetic fluorescence characteristics of grapevine leaves, root respiration, and degree of lignification of roots and shoots, as well as to provide a theoretical foundation for the management of grapevine production and cultivation. One-year-old potted ‘Kyoho’ was used as the study material. Three root temperature treatments were implemented for 15 days (9:00–16:00): 25 °C (CK), 30 °C (T1), and 35 °C (T2). The results showed that the malondialdehyde and H2O2 levels in leaves increased, while the chlorophyll content decreased. The oxygen-evolving complex was inactivated, and PSII donor and acceptor sides were blocked, thus reducing the photosynthetic gas exchange capacity at high root zone temperatures. The grapevine root activity and root/shoot ratio decreased. Simultaneously, the lignin content in the roots and shoots increased. In addition, there was a significant increase in the expression of key genes (PAL, C4H, 4CL, F5H, COMT, CCR, and CAD) in the root lignin synthesis pathway. Heightened root zone temperatures increased cyanide-resistant respiration in roots and heat release in the PPP pathway to alleviate stress damage. Therefore, it is recommended to use grass, mulching, and other cultivation management methods to maintain root zone temperatures below 30 °C in order to ensure the normal growth of grapevines and promote a high and stable yield.