Edulis Populations Research Articles

A Naïve Population of European Oyster Ostrea edulis with Reduced Susceptibility to the Pathogen Bonamia ostreae: Are S-Strategy Life Traits Providing Protection?

European populations of the native flat oyster, Ostrea edulis, have been heavily depleted by two protozoan parasites, Marteila refringens and Bonamia ostreae, with mortalities of up to 90% reported in naïve populations. However, in studies carried out over a 10-year period, researching the parasite-host relationship of B. ostreae and O. edulis in several age cohorts within a naïve O. edulis population from Loch Ryan (LR), Scotland, 1364 specimens were challenged and only 64 (5%), across multiple testing protocols, screened positive for B. ostreae. This article presents a case for the development of S-strategy life traits in the LR population that coincide with enhanced immune function and survival. Oysters are considered typical r-strategists (small in size with fast development and high fecundity) while S-strategists, as outlined in Grime's (1977) competitor-stress tolerant-ruderal (C-S-R) triangle theory, are characterized by slow growth and investment in the durability of individuals. This study hypothesizes that slower growth and reduced reproductive output in LR oysters has resulted in the investment of an enhanced immune function and reduced susceptibility to B. ostreae that is, r-strategists with S-strategy life traits equates to protection from significant pathogens. The findings presented here within provide a strong case study for local adaptation of energy allocation and provides empirical support for the C-S-R triangle theory in a marine organism.

Genetic Structure and Pod Morphology of Inga edulis Cultivated vs. Wild Populations from the Peruvian Amazon

Research Highlights: This study assesses the genetic diversity and structure of the ice-cream-bean (Inga edulis Mart.; Fabaceae) in wild and cultivated populations from the Peruvian Amazon. This research also highlights the importance of protecting the biodiversity of the forest in the Peruvian Amazon, to preserve the genetic resources of species and allow further genetic improvement. Background and Objectives: Ice-cream-bean is one of the most commonly used species in the Amazon region for its fruits and for shading protection of other species (e.g., cocoa and coffee plantations). Comprehensive studies about the impact of domestication on this species’ genetic diversity are needed, to find the best conservation and improvement strategies. Materials and Methods: In the current study, the genetic structure and diversity were assessed by genotyping 259 trees, sampled in five wild and 22 cultivated I. edulis populations in the Peruvian Amazon, with microsatellite markers. Pod length was measured in wild and cultivated trees. Results: The average pod length in cultivated trees was significantly higher than that in wild trees. The expected genetic diversity and the average number of alleles was higher in the wild compared to the cultivated populations; thus, a loss of genetic diversity was confirmed in the cultivated populations. The cultivated trees in the Loreto region had the highest pod length and lowest allelic richness; nevertheless, the wild populations’ genetic structure was not clearly differentiated (significantly different) from that of the cultivated populations. Conclusions: A loss of genetic diversity was confirmed in the cultivated populations. The species could have been simultaneously domesticated in multiple locations, usually from local origin. The original I. edulis Amazonian germplasm should be maintained. Cultivated populations’ new germplasm influx from wild populations should be undertaken to increase genetic diversity.

Genetic structure among morphotypes of the endangered Brazilian palm Euterpe edulis Mart (Arecaceae).

Euterpe edulis (Arecaceae) Mart has high ecological and economic importance providing food resources for more than 58 species of birds and 20 species of mammals, including humans. E. edulis is the second most exploited nontimber product from Brazilian Atlantic Forest. Due to overexploitation and destruction of habitats, E. edulis is threatened by extinction. Euterpe edulis populations have large morphological variations, with individuals having green, red, or yellow leaf sheath. However, no study has related phenotypic distinctions between populations and their levels of genetic structure. Thus, this study aimed to evaluate the diversity and genetic structure of different E. edulis morphotypes. We sampled 250 adult individuals in eight populations with the different morphotypes. Using 14 microsatellite markers, we access genetic diversity through population genetic parameters calculated in the GenAlex program and the diveRsity package in R. We used the Wilcoxon test to verify population bottlenecks and the genetic distance of Nei and Bayesian analysis for genetic clusters. The eight populations showed low allele richness, low observed heterozygosity, and high inbreeding values (f). In addition, six of the eight populations experienced genetic bottlenecks, which would partly explain the low genetic diversity in populations. Cluster analysis identified two clusters (K = 2), with green morphotype genetically distinguishing from yellow and red morphotypes. Thus, we show, for the first time, a strong genetic structure among E. edulis morphotypes even for geographically close populations.

A rapid and sensitive method to assess seed longevity through accelerated aging in an invasive plant species

BackgroundSeed longevity and vigor assessment is crucial for efficient ex situ biodiversity conservation in genebanks but may also have potential applications for the understanding of ecological processes and in situ biodiversity conservation. In fact, one of the factors determining the persistence of invasive species, a main threat to global biodiversity, is the generation of soil seed banks where seeds may remain viable for several years. Artificial seed aging tests using high temperatures and high relative humidity have been described for seed longevity estimation but have been mainly optimized for species with commercial interest. Thus, the aim of the study is to define a rapid and sensitive method to assess seed longevity and vigor through accelerated aging in the worldwide distributed invasive species Carpobrotus edulis to provide tools to biodiversity managers to evaluate invasive potential and develop effective post-eradication plans.ResultsSlow seed deterioration rate was obtained when C. edulis seeds were subjected to common accelerated aging temperatures (43–45 °C). This contrasts with the rapid viability decay between 24–72 h when seeds were subjected to temperatures superior to 55 °C, a strong inflection point for this species’ thermosensitivity. Relative humidity also played a role in defining seed survival curves, but only at high temperatures, speeding up the deterioration process. The selected aging conditions, 55 °C at 87% relative humidity were tested over two C. edulis populations and three measures were proposed to parametrize the differential sigmoidal seed survival curves, defining the seed resistance to deterioration (L5, aging time where 95% of seeds maintain their viability), medium longevity (L50, 50% of seeds lose their viability) and lethal aging time (L95, 95% of viability loss).ConclusionsAn accelerated aging test at 55 °C and 87% relative humidity constitutes a rapid and sensitive method that can be performed within a working week, allowing managers to easily test seed vigor and longevity. This test may contribute to assess invasive potential, design effective monitoring programs and soil seed bank eradication treatments.

Fuel oil hydrocarbons in Mytilus edulis in Buzzards Bay, Massachusetts USA: Comparison of data from two oil spills

A small No. 2 fuel oil spill contaminated a Mytilus edulis population in the Cape Cod Canal, Massachusetts, USA during a three day period in April 1983. Retention and release of the fuel oil compounds were assessed over several days and months. Compounds analyzed included n-alkanes, pristane, phytane, C2 -, C3 –naphthalenes, flourene, phenanthrene, C1-, C2-, C3 – phenanthrenes. Biological half-lives were calculated for the release of the compounds up to day 29 and ranged from 1.5 days to 9.9 days. Results compared favorably with similar data from a small No. 2 fuel oil spill contaminating the same population of Mytilus edulis at the same time of year, April 1978. Gas chromatography-mass spectrometer analyses of C2-, and C3- phenanthrenes documented changes in relative abundance within the isomer groupings after day 29. This suggests a within isomer grouping molecular structural control on release or enzymatic catalyzed alteration of these compounds.

The importance of protected areas for overexploited plants: Evidence from a biodiversity hotspot

Overexploitation is a main driver of biodiversity loss globally. Protected areas may have a key role in reducing overexploitation, yet their actual effectiveness in maintaining high-density and viable populations of overexploited species has rarely been evaluated. For overharvested plants, in particular, available information is extremely limited, making it unclear whether protected areas are indeed effective at protecting species. Here, we provide the first biome-wide assessment of the effectiveness of protected areas in maintaining populations of overexploited plants. We analyzed data from 50 populations of the overexploited and threatened palm Euterpe edulis, an ecologically and economically important species of the Atlantic Forest biodiversity hotspot. By integrating these data with species distribution modelling and matrix population modelling, we were able to evaluate the most likely causes and possible consequences of differences in population density inside and outside protected areas. Forest sites located inside protected areas had, on average, almost three times higher adult density of E. edulis than sites located outside protected areas, and a corresponding higher frequency of viable populations (≥60 adults/ha). Our analyses indicate that these differences are a direct consequence of the lower frequency of palm heart harvest inside protected areas, rather than differences in climatic suitability or forest cover. The matrix model showed that the higher density and lower harvest frequency inside protected areas may significantly increase long-term persistence of E. edulis populations, reducing their extinction risk. Our findings provide new and compelling evidence that terrestrial protected areas may be crucial for long-term conservation of overexploited plants.

Translocation and Aquaculture Impact on Genetic Diversity and Composition of Wild Self-Sustainable Ostrea edulis Populations in the Adriatic Sea

The European flat oyster, Ostrea edulis, is a keystone species suffering major population declines due to overfishing, habitat loss and parasite diseases. Knowledge of its fine-scale population genetic structure and connectivity, needed for effective conservation, restoration and management, is largely lacking. Along the eastern Adriatic Sea, genotyping of 1178 O. edulis individuals at 12 microsatellite loci was conducted, grouping the sampled populations by geographical origin (North, Middle, South Adriatic), shell-farm association (farmed, farm-impacted, wild oysters) and sampling year (2017, 2018), in order to explore spatio-temporal genetic variation and potential footprint of known human-mediated spat translocation events for aquaculture purpose. Short-term temporal genetic structuring of O. edulis populations was less pronounced compared to their spatial variability, which showed genetic discontinuity between O. edulis populations from different geographical regions, with the main boundary separating the North from the Middle and South Adriatic, and the weaker one limiting the flow between the Middle and South Adriatic. While the present culture practise and ongoing spat translocation promotes genetic heterogeneity in the investigated farms, reduced genetic diversity and smallest effective populations size of impacted, i.e. farm-associated O. edulis was consistently recorded in all geographical regions. Taken together, the results reflect regional oceanographic features, ongoing spat translocation and intensive harvesting, which might have reduced the wild O. edulis densities below the critical threshold for reproductive success, compromising settlement and favoring unidirectional gene-flow towards higher density farmed O. edulis. Genetic structure of Adriatic O. edulis populations revealed some concerning demographic changes and farm-wild oyster interactions and hence further investigation and management recommendations are given.

Marine stepping-stones: Connectivity of Mytilus edulis populations between offshore energy installations.

Recent papers have suggested that epifaunal organisms use artificial structures as stepping‐stones to spread to areas that are too distant to reach in a single generation. With thousands of artificial structures present in the North Sea, we test the hypothesis that these structures are connected by water currents and act as an interconnected reef. Population genetic structure of the blue mussel, Mytilus edulis, was expected to follow a pattern predicted by a particle tracking model (PTM). Correlation between population genetic differentiation, based on microsatellite markers, and particle exchange was tested. Specimens of M. edulis were found at each location, although the PTM indicated that locations >85 km offshore were isolated from coastal subpopulations. The fixation coefficient F ST correlated with the number of arrivals in the PTM. However, the number of effective migrants per generation as inferred from coalescent simulations did not show a strong correlation with the arriving particles. Isolation by distance analysis showed no increase in isolation with increasing distance and we did not find clear structure among the populations. The marine stepping‐stone effect is obviously important for the distribution of M. edulis in the North Sea and it may influence ecologically comparable species in a similar way. In the absence of artificial shallow hard substrates, M. edulis would be unlikely to survive in offshore North Sea waters.

Genetic diversity and population structure of Euterpe edulis by REML/BLUP analysis of fruit morphology and microsatellite markers

Abstract Euterpe edulis is an endemic species of the Atlantic Forest that is threatened by the unsustainable exploitation of palm heart. Fruit management is an alternative to overcome this problem, promoting income generation, preserving the trees in forest remnants and motivating the implementation of farms for commercial production. In this study, the genetic diversity and structure of four natural populations of E. edulis were evaluated using microsatellite markers and six morphological fruit traits, analyzed with and without the REML/BLUP method. The longitudinal diameter had the strongest influence on the differentiation of genotypes. The genetic differentiation among populations was low and inbreeding was detected within populations among sites. Molecular and morphological data indicated high genetic diversity in the E. edulis populations. The REML/BLUP analysis increased the accuracy of morphology-based estimates of genetic diversity, thus contributing to improve breeding strategies for fruit quality and genetic conservation by use in E. edulis.

Genetic diversity analysis in Plectranthus edulis (Vatke) Agnew populations collected from diverse geographic regions in Ethiopia using inter-simple sequence repeats (ISSRs) DNA marker system

BackgroundPlectranthus edulis (Vatke) Agnew (Lamiaceae), locally known as Ethiopian potato syno. Ethiopian dinich, is one of the native Ethiopian edible tuber crops that has been significantly contributing to household food security for millions of subsistence farmers. However, its current production is declining to the extent of total extinction from several administrative regions where it used to be widely cultivated. It is one of the less researched crops regardless of being indigenous and its contribution to food security during time of scarcity. Therefore, we intended to assess the level of genetic diversity in 67 accessions, representing nine populations that were collected from diverse agro-ecologies in the country, using ISSR markers and hence, to generate a baseline information that assists marker assisted breeding, conservation and germplasm management efforts.ResultsIn the present study, ten polymorphic ISSR markers were screened and optimized, that generated an average of 7.4 scorable bands per marker and revealed high overall percent polymorphism (95%), Nei’s gene diversity (h = 0.40) and Shannon index (I = 0.62) suggesting ISSR’s effectiveness in detecting high levels of genetic diversity. A considerably high overall populations gene diversity (Nei’s) (h = 0.32) and Shannon index (I = 0.47) were observed, revealing high potential of the populations for further breeding and conservation efforts particularly for population from Gurage administrative zone, which showed the highest values. Similarly, estimation of pairwise genetic distance revealed the importance of cross breeding population from Awi administrative zone to the rest populations. Analysis of hierarchical molecular variance (AMOVA) showed higher levels of genetic differentiation within populations (92%), and collection regions (94%) suggesting that either clonal mode of propagation in the crop or farmers selection pressure for important agronomic traits or both maintained the original heterozygosity in the crop. UPGMA phylogenetic analysis did not strictly group the populations based on their geographic region of origin, which could be attributed to the widely practiced tuber exchange and hence continuous human mediated exchange of genetic material and sharing of the same genetic base among the geographic regions.ConclusionsThe ISSR markers used in the present study were effective in revealing extent and patterns of genetic diversity in P. edulis populations. However, it is important to couple them with agro-morphological traits or codominant molecular markers to get more reliable information for use in breeding and conservation. Several of the potential administrative zones we covered are useful for P. edulis diversification and conservation. However, the crop is currently highly marginalized and this led to rapid decline in population size and loss of valuable agronomic traits. To address this challenge, there is an urgent need to take counteractive measures.

Involvement of apoptosis in the dialogue between the parasite Bonamia ostreae and the flat oyster Ostrea edulis

The protozoan parasite Bonamia ostreae has been associated with the decline of flat oyster Ostrea edulis populations in some European countries. Control of shellfish diseases mostly relies on prevention measures including transfer restrictions and stock management measures such as breeding programmes. These prevention and mitigation measures require a better understanding of interactions between host and pathogens. Previous in vitro studies allowed identifying apoptosis as a mechanism activated by the flat oyster in response to B. ostreae. However, these experiments also suggested that the parasite is able to regulate apoptosis in order to survive and multiply within hemocytes. By simplifying the conditions of infection, in vitro studies allow identifying most distinct features of the response of the host. In order to appreciate the relative importance of apoptosis in this response at the oyster scale, in vivo trials were carried out by injecting with parasites oysters from two French locations, Quiberon Bay (Brittany) and Diana Lagoon (Corsica). Apoptosis was investigated on pools of hemolymph from oysters collected at early and later times after injection using previously developed tools. Apoptotic cellular activities including intracytoplasmic calcium concentration, mitochondrial membrane potential and phosphatidyl serine externalization were analysed using flow cytometry. Moreover, the expression of flat oyster genes involved in both extrinsic and intrinsic pathways was measured using real time quantitative PCR.

Signatures of selection for bonamiosis resistance in European flat oyster (Ostrea edulis): New genomic tools for breeding programs and management of natural resources.

The European flat oyster (Ostrea edulis) is a highly appreciated mollusk with an important aquaculture production throughout the 20th century, in addition to playing an important role on coastal ecosystems. Overexploitation of natural beds, habitat degradation, introduction of non‐native species, and epidemic outbreaks have severely affected this important resource, particularly, the protozoan parasite Bonamia ostreae, which is the main concern affecting its production and conservation. In order to identify genomic regions and markers potentially associated with bonamiosis resistance, six oyster beds distributed throughout the European Atlantic coast were sampled. Three of them have been exposed to this parasite since the early 1980s and showed some degree of innate resistance (long‐term affected group, LTA), while the other three were free of B. ostreae at least until sampling date (naïve group, NV). A total of 14,065 SNPs were analyzed, including 37 markers from candidate genes and 14,028 from a medium‐density SNP array. Gene diversity was similar between LTA and NV groups suggesting no genetic erosion due to long‐term exposure to the parasite, and three population clusters were detected using the whole dataset. Tests for divergent selection between NV and LTA groups detected the presence of a very consistent set of 22 markers, located within a putative single genomic region, which suggests the presence of a major quantitative trait locus associated with B. ostreae resistance. Moreover, 324 outlier loci associated with factors other than bonamiosis were identified allowing fully discrimination of all the oyster beds. A practical tool which included the 84 highest discriminative markers for tracing O. edulis populations was developed and tested with empirical data. Results reported herein could assist the production of stocks with improved resistance to bonamiosis and facilitate the management of oyster beds for recovery production and ecosystem services provided by this species.

EXOTIC PALMS THREATENS NATIVE PALMS: A RISK TO PLANT BIODIVERSITY OF ATLANTIC FOREST

ABSTRACT Invasive plants can profoundly modify physical and biological characteristics of their new environments, especially when such habitats are already fragmented and reduced by anthropogenic pressure, such as the Atlantic Forest of Brazil. Here, we hypothesized that exotic palms successfully establish among the natural Euterpe edulis populations through a continuous propagule input by avifauna, high germination rates, and rapid growth. As a result, the native palm is experiencing decline and may be threatened with extinction. Beginning in 2007, we conducted a continuous forest inventory (FCI) every three years in the primary and secondary forest fragments of Viçosa, Minas Gerais. We use a Markov matrix to project future distributions of palm trees. The secondary forest contained three exotic palm species: Archontophoenix alexandrae, Livistona chinensis, and Arenga caudata. The first palm is a serious risk to natural E. edulis populations in the Atlantic because of frequent interactions with birds, rapid germination, and aggressive colonization in the lower to medium vertical forest strata. Currently, natural E. edulis populations are viable and sustainable, capable of regeneration, growth, and fruiting, their communities maintain continuous gene flow, dominating vertical forest strata compared with exotic palms. However, exotic palms should be monitored and control measures should be analyzed, especially in areas with A. alexandrae populations.

Molecular and cellular characterization of apoptosis in flat oyster a key mechanisms at the heart of host-parasite interactions

Bonamia ostreae has been associated with the decline of flat oyster Ostrea edulis populations in some European countries. This obligatory intracellular parasite persists and multiplies into hemocytes. Previous in vitro experiments showed that apoptosis is activated in hemocytes between 1 h and 4 h of contact with the parasite. The flat oyster uses the apoptosis pathway to defend against B. ostreae. However, the parasite might be also able to modulate this response in order to survive in its host. In order to investigate this hypothesis the apoptotic response of the host was evaluated using flow cytometry, transmission electron microscopy and by measuring the response of genes involved in the apoptotic pathway after 4 h. In parallel, the parasite response was investigated by measuring the expression of B. ostreae genes involved in different biological functions including cell cycle and cell death. Obtained results allow describing molecular apoptotic pathways in O. edulis and confirm that apoptosis is early activated in hemocytes after a contact with B. ostreae. Interestingly, at cellular and molecular levels this process appeared downregulated after 44 h of contact. Concurrently, parasite gene expression appeared reduced suggesting that the parasite could inhibit its own metabolism to escape the immune response.

Return of the native facilitated by the invasive? Population composition, substrate preferences and epibenthic species richness of a recently discovered shellfish reef with native European flat oysters (Ostrea edulis) in the North Sea

ABSTRACTAfter being ecologically extinct for almost a century, the discovery of a shellfish reef with native European flat oysters (Ostrea edulis) in the Dutch coastal area of the North Sea by the authors of this study called for an extensive survey to better understand some of the key requirements for the return of the native oyster in coastal waters. We assessed habitat conditions, its potential for increasing biodiversity, and the role of substrate provision by other bivalves such as the invasive alien Pacific oyster (Crassostrea gigas). Using underwater visual census, O. edulis size-frequency distributions and attachment substrate was investigated, as well as the composition of the epibenthic community and substrata types inside quadrats that were distributed across the reef. This reef was found to be composed of native European flat oysters, invasive alien Pacific oysters and blue mussels (Mytilus edulis), alternated with sandy patches. The O. edulis population (6.8 ± 0.6 oysters m−2) consisted of individuals of different size classes. In quadrats with native and non-native oysters the number of epibenthic species was 60% higher compared to adjacent sand patches within the reef. Notably, our results showed that the native oyster predominantly used shell (fragments) of the invasive Pacific oyster as settlement substrate (81% of individuals). Our results optimistically show that conditions for native oyster restoration can be suitable at a local scale in the coastal North Sea area and suggest that the return of native oysters may be facilitated by novel substrate provided by invasive oysters at sites where their distribution overlap.

Proteomic profile of Ostrea edulis haemolymph in response to bonamiosis and identification of candidate proteins as resistance markers.

European flat oyster Ostrea edulis populations have suffered extensive mortalities caused by bonamiosis. The protozoan parasite Bonamia ostreae is largely responsible for this disease in Europe, while its congener B. exitiosa has been detected more recently in various European countries. Both of these intracellular parasites are able to survive and proliferate within haemocytes, the main cellular effectors of the immune system in molluscs. Two-dimensional electrophoresis was used to compare the haemolymph protein profile between Bonamia spp.-infected and non-infected oysters within 3 different stocks, a Galician stock of oysters selected for resistance against bonamiosis, a non-selected Galician stock and a selected Irish stock. Thirty-four proteins with a presumably relevant role in the oyster-Bonamia spp. interaction were identified; they were involved in major metabolic pathways, such as energy production, respiratory chain, oxidative stress, signal transduction, transcription, translation, protein degradation and cell defence. Furthermore, the haemolymph proteomic profiles of the non-infected oysters of the 2 Galician stocks were compared. As a result, 7 proteins representative of the non-infected Galician oysters selected for resistance against bonamiosis were identified; these 7 proteins could be considered as candidate markers of resistance to bonamiosis, which should be further assessed.

Historical and event-based bioclimatic suitability predicts regional forest vulnerability to compound effects of severe drought and bark beetle infestation.

Vulnerability to climate change, and particularly to climate extreme events, is expected to vary across species ranges. Thus, we need tools to standardize the variability in regional climatic legacy and extreme climate across populations and species. Extreme climate events (e.g., droughts) can erode populations close to the limits of species' climatic tolerance. Populations in climatic-core locations may also become vulnerable because they have developed a greater demand for resources (i.e., water) that cannot be enough satisfied during the periods of scarcity. These mechanisms can become exacerbated in tree populations when combined with antagonistic biotic interactions, such as insect infestation. We used climatic suitability indices derived from Species Distribution Models (SDMs) to standardize the climatic conditions experienced across Pinus edulis populations in southwestern North America, during a historical period (1972-2000) and during an extreme event (2001-2007), when the compound effect of hot drought and bark beetle infestation caused widespread die-off and mortality. Pinus edulis climatic suitability diminished dramatically during the die-off period, with remarkable variation between years. P.edulis die-off occurred mainly not just in sites that experienced lower climatic suitability during the drought but also where climatic suitability was higher during the historical period. The combined effect of historically high climatic suitability and a marked decrease in the climatic suitability during the drought best explained the range-wide mortality. Lagged effects of climatic suitability loss in previous years and co-occurrence of Juniperus monosperma also explained P.edulis die-off in particular years. Overall, the study shows that past climatic legacy, likely determining acclimation, together with competitive interactions plays a major role in responses to extreme drought. It also provides a new approach to standardize the magnitude of climatic variability across populations using SDMs, improving our capacity to predict population's or species' vulnerability to climatic change.

Spatial and temporal differences in gonad development, sex ratios and reproductive output, influence the sustainability of exploited populations of the European oyster, Ostrea edulis

Abstract The European native oyster, Ostrea edulis, has been in severe decline since the early 1900s across Europe with many fisheries now declared commercially extinct. In light of this broad scale population decline, the UK has listed O. edulis as a threatened species, requiring conservation action under the Biodiversity Action Plan (BAP). In addition to this designation, in Scotland O. edulis beds is a search feature (SF) and a priority marine feature (PMF) for MPA site selection. These sites are also listed as a feature of conservation importance and included on the OSPAR list of threatened/declining species and habitats. Recent studies have identified O. edulis populations with heavily male‐skewed sex ratios, which may have contributed to fisheries decline due to reduced levels of fertilization. This species is a protandrous alternating hermaphrodite and individuals may change sex in response to local conditions. This study aimed to assess how sex ratios vary temporally and if this is correlated with temperature, by studying two exploited populations in Loch Ryan, Scotland and Chichester Harbour, England. This study suggests that the proportion of male phase oysters is positively correlated with water temperature and that the study population in cooler waters had a more balanced sex ratio overall (the Loch Ryan population was significantly similar to 1:1 for 10 of 13 months, whereas in Chichester only 1 of the 7 months was significantly similar). This study provides evidence to suggest that a critical temperature threshold for sex determination exists in O. edulis and for the Loch Ryan population we suggest that this is 16.5°C. However, further work is required to assess how this threshold may change between sites and how future climate change scenarios might affect the sex ratio of native oyster populations.

Disruption of doubly uniparental inheritance of mitochondrial DNA associated with hybridization area of European Mytilus edulis and Mytilus trossulus in Norway

Doubly uniparental inheritance of mitochondria (DUI) is best known in the blue mussel Mytilus. Under this model, two types of mitochondrial DNA exist: female type (F), transmitted from females to offspring of both genders, and male type (M), transmitted exclusively from males to sons. The mitogenomes are usually highly divergent, but an occasional replacement of a typical M genome by a particular F genome has been postulated to explain reduction of this divergence. Disruption of the DUI model has been reported in hybridization areas. Here, we present a new case of DUI disruption in a hybrid M. trossulus/M. edulis population from the North Sea (Norway). No M haplotypes derived from M. trossulus were identified in this population. Typical M haplotypes derived from M. edulis (ME) were rare. Two F-type haplogroups were found: one derived from M. edulis (FE) and the second derived from M. trossulus (FT). Many haplotypes from the FT group were recombinants, with the male CR sequence coming from the M. trossulus genome (FT1 haplogroup) in contrast to M. edulis CR as in the Baltic. FT1 haplotypes were abundant in the studied population, including homoplasmic females. However, males significantly more often carried these haplotypes; therefore, male heteroplasmy involved the original FE and recombinant FT, indicating that the FT genome undergoes masculinization. Structural similarity of FT1 CR with previously reported, masculinized Baltic haplotypes, which were derived from FE/ME recombination, provides further evidence that CR M–F recombination is a prerequisite for masculinization, also in the context of native M. trossulus mtDNA.

Development of a Medium Density Combined-Species SNP Array for Pacific and European Oysters (Crassostrea gigas and Ostrea edulis).

SNP arrays are enabling tools for high-resolution studies of the genetic basis of complex traits in farmed and wild animals. Oysters are of critical importance in many regions from both an ecological and economic perspective, and oyster aquaculture forms a key component of global food security. The aim of our study was to design a combined-species, medium density SNP array for Pacific oyster (Crassostrea gigas) and European flat oyster (Ostrea edulis), and to test the performance of this array on farmed and wild populations from multiple locations, with a focus on European populations. SNP discovery was carried out by whole-genome sequencing (WGS) of pooled genomic DNA samples from eight C. gigas populations, and restriction site-associated DNA sequencing (RAD-Seq) of 11 geographically diverse O. edulis populations. Nearly 12 million candidate SNPs were discovered and filtered based on several criteria, including preference for SNPs segregating in multiple populations and SNPs with monomorphic flanking regions. An Affymetrix Axiom Custom Array was created and tested on a diverse set of samples (n = 219) showing ∼27 K high quality SNPs for C. gigas and ∼11 K high quality SNPs for O. edulis segregating in these populations. A high proportion of SNPs were segregating in each of the populations, and the array was used to detect population structure and levels of linkage disequilibrium (LD). Further testing of the array on three C. gigas nuclear families (n = 165) revealed that the array can be used to clearly distinguish between both families based on identity-by-state (IBS) clustering parental assignment software. This medium density, combined-species array will be publicly available through Affymetrix, and will be applied for genome-wide association and evolutionary genetic studies, and for genomic selection in oyster breeding programs.